Wall clock time and date at job start Mon Mar 30 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47111 * 2 1 4 4 C 1.52990 * 109.47156 * 120.00454 * 2 1 3 5 5 C 1.52994 * 109.47452 * 65.00075 * 4 2 1 6 6 O 1.45200 * 109.47375 * 180.02562 * 5 4 2 7 7 C 1.34643 * 117.00100 * 179.97438 * 6 5 4 8 8 O 1.21501 * 120.00131 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.39253 * 119.99835 * 184.28993 * 9 7 6 11 11 C 1.39476 * 119.83521 * 324.70866 * 10 9 7 12 12 C 1.36373 * 120.16992 * 180.27857 * 11 10 9 13 13 C 1.40872 * 119.82895 * 359.47663 * 12 11 10 14 14 C 1.41152 * 120.16720 * 180.23567 * 13 12 11 15 15 H 1.08007 * 119.99578 * 215.05567 * 14 13 12 16 16 C 1.39895 * 120.00413 * 35.04858 * 14 13 12 17 17 N 1.30884 * 119.99616 * 355.55263 * 16 14 13 18 18 Si 1.86799 * 120.00168 * 175.54398 * 16 14 13 19 19 H 1.48500 * 109.47022 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47072 * 120.00507 * 18 16 14 21 21 H 1.48498 * 109.47004 * 240.00267 * 18 16 14 22 22 C 1.40875 * 119.66840 * 0.54354 * 13 12 11 23 23 C 1.36373 * 119.82503 * 359.70715 * 22 13 12 24 24 H 1.08997 * 109.47290 * 300.00021 * 1 2 3 25 25 H 1.09007 * 109.47235 * 59.99878 * 1 2 3 26 26 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46797 * 240.00449 * 2 1 3 28 28 H 1.09004 * 109.47561 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47636 * 300.00209 * 3 2 1 30 30 H 1.09003 * 109.47323 * 60.00164 * 3 2 1 31 31 H 1.09001 * 109.47124 * 304.99583 * 4 2 1 32 32 H 1.09005 * 109.47232 * 184.99933 * 4 2 1 33 33 H 1.09001 * 109.47357 * 59.99651 * 5 4 2 34 34 H 1.09003 * 109.47216 * 299.99818 * 5 4 2 35 35 H 0.96994 * 119.99738 * 4.28580 * 9 7 6 36 36 H 1.07999 * 119.91491 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.08678 * 179.72304 * 12 11 10 38 38 H 0.96998 * 119.99611 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.08598 * 179.69427 * 22 13 12 40 40 H 1.08007 * 119.91177 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 8 2.1188 -2.8799 2.3736 7 6 1.8441 -4.1940 2.4756 8 8 1.2170 -4.7535 1.5981 9 7 2.2646 -4.8889 3.5512 10 6 2.0589 -6.2647 3.6153 11 6 0.8992 -6.8189 3.0737 12 6 0.6881 -8.1647 3.1377 13 6 1.6502 -8.9968 3.7430 14 6 1.4413 -10.3912 3.8087 15 1 1.7855 -10.9489 4.6673 16 6 0.7885 -11.0509 2.7620 17 7 0.2945 -10.3646 1.7630 18 14 0.6221 -12.9113 2.7899 19 1 1.2599 -13.4469 4.0193 20 1 -0.8164 -13.2798 2.7781 21 1 1.2901 -13.4859 1.5945 22 6 2.8188 -8.4296 4.2882 23 6 3.0134 -7.0815 4.2212 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2950 33 1 2.0699 -2.6550 0.3000 34 1 0.5490 -2.2724 1.1419 35 1 2.7105 -4.4307 4.2806 36 1 0.1642 -6.1800 2.6068 37 1 -0.2124 -8.5918 2.7219 38 1 -0.1578 -10.8220 1.0371 39 1 3.5585 -9.0607 4.7582 40 1 3.9090 -6.6452 4.6383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194871507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:07 Heat of formation + Delta-G solvation = -79.940459 kcal Electronic energy + Delta-G solvation = -20583.142851 eV Core-core repulsion = 17362.058031 eV Total energy + Delta-G solvation = -3221.084820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21875 -38.09036 -37.00802 -35.72523 -34.46068 -32.92618 -30.07541 -29.51298 -28.81579 -27.44503 -25.18274 -23.56380 -21.72345 -21.21133 -20.37025 -19.94047 -18.22522 -17.29742 -16.63827 -16.45244 -15.72997 -15.29817 -15.05988 -14.22582 -14.14065 -13.93329 -13.65124 -13.20743 -12.76857 -12.65964 -12.41117 -12.14487 -12.04022 -11.85774 -11.68506 -11.49628 -11.19749 -11.17709 -11.02311 -10.90641 -10.89171 -10.53677 -10.25879 -10.11433 -9.92921 -9.70337 -9.11283 -8.83962 -7.54294 -6.92344 -6.60354 -4.34433 2.46038 2.70797 3.02908 3.10702 3.11493 3.16501 3.48684 3.98676 4.41739 4.57787 4.61670 4.71492 4.90460 5.02796 5.20071 5.35414 5.37020 5.41388 5.54062 5.62472 5.63555 5.72595 5.77704 5.88340 6.05929 6.09977 6.12972 6.33486 6.55642 6.79812 6.99276 7.03557 7.18961 7.27673 7.62623 7.65456 7.95813 8.08439 8.16178 8.31582 8.66122 8.85834 8.92594 9.02203 10.30720 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036794 B = 0.002991 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.819498 B = 9359.621278 C = 9945.318317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.115 4.115 5 C 0.086 3.914 6 O -0.379 6.379 7 C 0.634 3.366 8 O -0.559 6.559 9 N -0.630 5.630 10 C 0.014 3.986 11 C -0.092 4.092 12 C -0.144 4.144 13 C 0.101 3.899 14 C -0.461 4.461 15 H 0.077 0.923 16 C 0.068 3.932 17 N -0.806 5.806 18 Si 0.916 3.084 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.203 4.203 23 C -0.109 4.109 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.402 0.598 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.278 0.722 39 H 0.099 0.901 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.956 16.691 -1.280 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.152 4.152 5 C 0.011 3.989 6 O -0.294 6.294 7 C 0.387 3.613 8 O -0.446 6.446 9 N -0.280 5.280 10 C -0.077 4.077 11 C -0.112 4.112 12 C -0.164 4.164 13 C 0.098 3.902 14 C -0.492 4.492 15 H 0.095 0.905 16 C -0.147 4.147 17 N -0.433 5.433 18 Si 0.741 3.259 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.223 4.223 23 C -0.129 4.129 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.236 0.764 36 H 0.127 0.873 37 H 0.149 0.851 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.513 16.459 -2.003 16.649 hybrid contribution 0.185 -0.621 0.048 0.650 sum 1.698 15.838 -1.954 16.048 Atomic orbital electron populations 1.21958 0.94948 1.02350 1.01930 1.21040 0.96215 0.96313 0.97713 1.21817 1.01051 0.95495 1.01909 1.21646 1.02120 0.92566 0.98899 1.22974 0.99657 0.91116 0.85159 1.86167 1.74991 1.22375 1.45889 1.18222 0.79901 0.80212 0.82965 1.90998 1.43333 1.69359 1.40956 1.41594 1.61101 1.07068 1.18223 1.17098 0.98460 0.78955 1.13237 1.20670 0.95192 0.96009 0.99373 1.21297 1.00691 0.90930 1.03457 1.17758 0.89526 0.93503 0.89394 1.19523 1.32660 0.92759 1.04248 0.90501 1.25913 0.93013 1.00947 0.94856 1.69803 1.28209 1.37363 1.07958 0.86143 0.78578 0.82065 0.79146 1.18596 1.19986 1.19997 1.20692 0.98738 0.93184 1.09714 1.20054 0.96279 0.93783 1.02774 0.92459 0.92532 0.92135 0.90764 0.92549 0.92493 0.92538 0.90807 0.90820 0.91384 0.91123 0.76433 0.87335 0.85095 0.91094 0.88300 0.88879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.95 37.16 0.33 -0.91 16 2 C -0.09 -0.76 2.92 -90.63 -0.26 -1.02 16 3 C -0.15 -0.97 9.19 37.16 0.34 -0.63 16 4 C -0.11 -1.09 5.06 -26.74 -0.14 -1.23 16 5 C 0.09 1.12 5.23 37.15 0.19 1.31 16 6 O -0.38 -6.04 10.27 -40.33 -0.41 -6.45 16 7 C 0.63 12.42 8.58 54.06 0.46 12.88 16 8 O -0.56 -12.93 13.55 -19.27 -0.26 -13.19 16 9 N -0.63 -11.91 5.31 -14.14 -0.08 -11.98 16 10 C 0.01 0.31 6.31 -83.57 -0.53 -0.22 16 11 C -0.09 -2.33 8.61 -39.79 -0.34 -2.67 16 12 C -0.14 -3.87 8.61 -39.26 -0.34 -4.21 16 13 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 14 C -0.46 -12.27 9.02 -37.86 -0.34 -12.61 16 15 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 16 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 17 N -0.81 -21.52 10.61 55.55 0.59 -20.93 16 18 Si 0.92 19.09 29.56 -169.99 -5.03 14.06 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 C -0.20 -4.90 9.74 -39.26 -0.38 -5.28 16 23 C -0.11 -2.38 9.90 -39.79 -0.39 -2.78 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.55 6.57 -51.93 -0.34 0.20 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.93 6.56 -51.93 -0.34 0.59 16 35 H 0.40 6.07 8.92 -40.82 -0.36 5.71 16 36 H 0.11 2.76 6.22 -52.49 -0.33 2.43 16 37 H 0.13 3.68 6.15 -52.49 -0.32 3.36 16 38 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 39 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -30.05 333.67 -8.13 -38.18 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.89 Total: 8.89 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.08 Total: -13.60 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.51 Total: -32.91 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.68 Total: -19.64 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.05 -8.13 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194871507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.762 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds