Wall clock time and date at job start Mon Mar 30 2020 01:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47111 * 2 1 4 4 C 1.52990 * 109.47156 * 120.00454 * 2 1 3 5 5 C 1.52994 * 109.47452 * 65.00075 * 4 2 1 6 6 O 1.45200 * 109.47375 * 180.02562 * 5 4 2 7 7 C 1.34643 * 117.00100 * 179.97438 * 6 5 4 8 8 O 1.21501 * 120.00131 * 359.97438 * 7 6 5 9 9 N 1.34784 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.39253 * 119.99835 * 184.28993 * 9 7 6 11 11 C 1.39476 * 119.83521 * 324.70866 * 10 9 7 12 12 C 1.36373 * 120.16992 * 180.27857 * 11 10 9 13 13 C 1.40872 * 119.82895 * 359.47663 * 12 11 10 14 14 C 1.41152 * 120.16720 * 180.23567 * 13 12 11 15 15 H 1.08007 * 119.99578 * 215.05567 * 14 13 12 16 16 C 1.39895 * 120.00413 * 35.04858 * 14 13 12 17 17 N 1.30884 * 119.99616 * 355.55263 * 16 14 13 18 18 Si 1.86799 * 120.00168 * 175.54398 * 16 14 13 19 19 H 1.48500 * 109.47022 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47072 * 120.00507 * 18 16 14 21 21 H 1.48498 * 109.47004 * 240.00267 * 18 16 14 22 22 C 1.40875 * 119.66840 * 0.54354 * 13 12 11 23 23 C 1.36373 * 119.82503 * 359.70715 * 22 13 12 24 24 H 1.08997 * 109.47290 * 300.00021 * 1 2 3 25 25 H 1.09007 * 109.47235 * 59.99878 * 1 2 3 26 26 H 1.09001 * 109.46978 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46797 * 240.00449 * 2 1 3 28 28 H 1.09004 * 109.47561 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47636 * 300.00209 * 3 2 1 30 30 H 1.09003 * 109.47323 * 60.00164 * 3 2 1 31 31 H 1.09001 * 109.47124 * 304.99583 * 4 2 1 32 32 H 1.09005 * 109.47232 * 184.99933 * 4 2 1 33 33 H 1.09001 * 109.47357 * 59.99651 * 5 4 2 34 34 H 1.09003 * 109.47216 * 299.99818 * 5 4 2 35 35 H 0.96994 * 119.99738 * 4.28580 * 9 7 6 36 36 H 1.07999 * 119.91491 * 359.97438 * 11 10 9 37 37 H 1.08000 * 120.08678 * 179.72304 * 12 11 10 38 38 H 0.96998 * 119.99611 * 179.97438 * 17 16 14 39 39 H 1.07996 * 120.08598 * 179.69427 * 22 13 12 40 40 H 1.08007 * 119.91177 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6353 -2.1955 1.1878 6 8 2.1188 -2.8799 2.3736 7 6 1.8441 -4.1940 2.4756 8 8 1.2170 -4.7535 1.5981 9 7 2.2646 -4.8889 3.5512 10 6 2.0589 -6.2647 3.6153 11 6 0.8992 -6.8189 3.0737 12 6 0.6881 -8.1647 3.1377 13 6 1.6502 -8.9968 3.7430 14 6 1.4413 -10.3912 3.8087 15 1 1.7855 -10.9489 4.6673 16 6 0.7885 -11.0509 2.7620 17 7 0.2945 -10.3646 1.7630 18 14 0.6221 -12.9113 2.7899 19 1 1.2599 -13.4469 4.0193 20 1 -0.8164 -13.2798 2.7781 21 1 1.2901 -13.4859 1.5945 22 6 2.8188 -8.4296 4.2882 23 6 3.0134 -7.0815 4.2212 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -0.2618 2.1369 32 1 3.1263 -0.6444 1.2950 33 1 2.0699 -2.6550 0.3000 34 1 0.5490 -2.2724 1.1419 35 1 2.7105 -4.4307 4.2806 36 1 0.1642 -6.1800 2.6068 37 1 -0.2124 -8.5918 2.7219 38 1 -0.1578 -10.8220 1.0371 39 1 3.5585 -9.0607 4.7582 40 1 3.9090 -6.6452 4.6383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194871507.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:06 Heat of formation + Delta-G solvation = -96.858397 kcal Electronic energy + Delta-G solvation = -20583.876468 eV Core-core repulsion = 17362.058031 eV Total energy + Delta-G solvation = -3221.818437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77256 -39.73212 -38.20013 -36.95150 -36.22952 -34.76368 -31.49429 -31.20688 -30.42887 -28.04595 -26.98726 -24.71062 -23.36166 -23.01802 -21.83462 -20.92957 -19.76430 -19.22855 -18.23880 -17.78534 -17.34826 -16.80009 -16.17407 -15.77842 -15.45516 -14.90017 -14.85812 -14.74955 -14.53700 -14.01389 -13.73471 -13.60417 -13.36682 -13.06631 -12.96398 -12.81467 -12.64980 -12.60420 -12.35858 -11.99591 -11.87112 -11.82571 -11.71763 -11.56870 -11.47818 -11.35850 -11.00505 -10.66441 -9.47838 -8.81325 -8.50480 -6.34056 0.74222 1.12120 1.16793 1.40361 1.45566 1.56253 1.83497 2.24313 2.80434 3.22718 3.67421 3.81831 3.85759 4.03024 4.16992 4.31192 4.39427 4.42584 4.46363 4.72614 4.78377 4.83044 4.88632 4.96685 5.02238 5.08229 5.10146 5.12278 5.26844 5.31302 5.34882 5.40759 5.42646 5.46727 5.69741 5.82570 6.04650 6.12975 6.32147 6.54284 6.69227 6.95387 7.00293 7.38710 8.42746 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036794 B = 0.002991 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.819498 B = 9359.621278 C = 9945.318317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.093 4.093 3 C -0.142 4.142 4 C -0.105 4.105 5 C 0.078 3.922 6 O -0.365 6.365 7 C 0.636 3.364 8 O -0.598 6.598 9 N -0.619 5.619 10 C 0.025 3.975 11 C -0.106 4.106 12 C -0.168 4.168 13 C 0.068 3.932 14 C -0.492 4.492 15 H 0.082 0.918 16 C 0.021 3.979 17 N -0.845 5.845 18 Si 0.992 3.008 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.207 4.207 23 C -0.099 4.099 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.424 0.576 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.283 0.717 39 H 0.118 0.882 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 17.845 -0.572 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.111 4.111 3 C -0.199 4.199 4 C -0.142 4.142 5 C 0.004 3.996 6 O -0.279 6.279 7 C 0.390 3.610 8 O -0.489 6.489 9 N -0.271 5.271 10 C -0.067 4.067 11 C -0.126 4.126 12 C -0.188 4.188 13 C 0.066 3.934 14 C -0.523 4.523 15 H 0.100 0.900 16 C -0.190 4.190 17 N -0.473 5.473 18 Si 0.813 3.187 19 H -0.176 1.176 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.227 4.227 23 C -0.119 4.119 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.262 0.738 36 H 0.116 0.884 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.103 17.676 -1.262 17.991 hybrid contribution -0.283 -0.772 -0.190 0.844 sum 2.821 16.903 -1.453 17.199 Atomic orbital electron populations 1.21971 0.95076 1.01552 1.02707 1.21053 0.96108 0.97169 0.96792 1.21791 1.01355 0.94234 1.02565 1.21658 1.02707 0.89799 1.00041 1.23328 0.99499 0.92875 0.83910 1.86199 1.74532 1.20160 1.47027 1.18333 0.79041 0.81185 0.82455 1.90987 1.44973 1.70515 1.42444 1.41371 1.60952 1.05809 1.18979 1.17128 0.97349 0.80769 1.11490 1.20672 0.96384 0.95371 1.00166 1.21162 1.00605 0.91871 1.05150 1.18109 0.90689 0.94074 0.90556 1.19811 1.34176 0.93157 1.05114 0.89978 1.26875 0.92099 1.06013 0.94027 1.69918 1.29129 1.39457 1.08801 0.85006 0.78751 0.75560 0.79399 1.17630 1.19317 1.19516 1.20972 0.98131 0.94549 1.09079 1.20412 0.97243 0.92898 1.01373 0.91959 0.91552 0.93694 0.90961 0.92065 0.91711 0.92063 0.90062 0.89988 0.92062 0.91611 0.73829 0.88422 0.87537 0.90694 0.86416 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.95 71.98 0.64 -1.68 16 2 C -0.09 -1.33 2.92 -10.80 -0.03 -1.36 16 3 C -0.14 -1.56 9.19 71.98 0.66 -0.89 16 4 C -0.10 -1.79 5.06 30.59 0.15 -1.64 16 5 C 0.08 1.98 5.23 71.98 0.38 2.35 16 6 O -0.37 -11.08 10.27 -55.53 -0.57 -11.65 16 7 C 0.64 24.38 8.58 129.79 1.11 25.50 16 8 O -0.60 -28.07 13.55 19.84 0.27 -27.80 16 9 N -0.62 -22.24 5.31 -429.06 -2.28 -24.52 16 10 C 0.02 1.11 6.31 38.56 0.24 1.35 16 11 C -0.11 -5.47 8.61 22.13 0.19 -5.28 16 12 C -0.17 -9.42 8.61 22.48 0.19 -9.23 16 13 C 0.07 3.73 5.55 -21.27 -0.12 3.61 16 14 C -0.49 -26.70 9.02 23.39 0.21 -26.49 16 15 H 0.08 4.20 7.85 -2.91 -0.02 4.17 16 16 C 0.02 1.11 5.42 85.24 0.46 1.58 16 17 N -0.85 -46.84 10.61 21.82 0.23 -46.61 16 18 Si 0.99 39.49 29.56 68.60 2.03 41.51 16 19 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.76 16 22 C -0.21 -9.78 9.74 22.48 0.22 -9.56 16 23 C -0.10 -4.12 9.90 22.13 0.22 -3.90 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 26 H 0.04 0.80 6.57 -2.39 -0.02 0.79 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 1.74 6.56 -2.39 -0.02 1.73 16 35 H 0.42 11.47 8.92 -92.71 -0.83 10.65 16 36 H 0.10 5.19 6.22 -2.91 -0.02 5.17 16 37 H 0.11 6.40 6.15 -2.91 -0.02 6.38 16 38 H 0.28 14.31 8.30 -92.71 -0.77 13.55 16 39 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 40 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -66.77 333.67 4.43 -62.34 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: 0.21 Total: 32.39 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 4.54 Total: -25.66 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -2.05 Total: -71.12 kcal Atomic # 8 Polarization: -39.16 SS G_CDS: -0.30 Total: -39.46 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.51 kcal Total: -66.77 4.43 -62.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194871507.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.521 kcal (2) G-P(sol) polarization free energy of solvation -66.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds