Wall clock time and date at job start Mon Mar 30 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46999 * 2 1 4 4 C 1.53002 * 109.47236 * 119.99963 * 2 1 3 5 5 C 1.53002 * 109.47094 * 175.00002 * 4 2 1 6 6 O 1.45198 * 109.47210 * 179.97438 * 5 4 2 7 7 C 1.34639 * 117.00163 * 179.97438 * 6 5 4 8 8 O 1.21513 * 120.00059 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00521 * 180.27427 * 7 6 5 10 10 C 1.39141 * 120.00554 * 175.53636 * 9 7 6 11 11 C 1.38643 * 120.28528 * 34.55944 * 10 9 7 12 12 C 1.38216 * 120.03500 * 180.02562 * 11 10 9 13 13 C 1.38867 * 120.61446 * 359.97271 * 12 11 10 14 14 C 1.36460 * 120.57984 * 0.02562 * 13 12 11 15 15 C 1.40735 * 119.93878 * 359.72741 * 14 13 12 16 16 C 1.41075 * 120.29871 * 180.27665 * 15 14 13 17 17 H 1.08007 * 119.99900 * 214.94311 * 16 15 14 18 18 C 1.39947 * 120.00455 * 34.93943 * 16 15 14 19 19 N 1.30862 * 119.99614 * 355.65414 * 18 16 15 20 20 Si 1.86802 * 120.00633 * 175.64973 * 18 16 15 21 21 H 1.48498 * 109.46944 * 59.99925 * 20 18 16 22 22 H 1.48493 * 109.47150 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.46911 * 300.00454 * 20 18 16 24 24 H 1.08998 * 109.46980 * 299.99847 * 1 2 3 25 25 H 1.08993 * 109.47410 * 60.00397 * 1 2 3 26 26 H 1.09006 * 109.46759 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46980 * 240.00153 * 2 1 3 28 28 H 1.08995 * 109.46849 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.47264 * 300.00121 * 3 2 1 30 30 H 1.08998 * 109.47130 * 60.00245 * 3 2 1 31 31 H 1.09006 * 109.47019 * 55.00111 * 4 2 1 32 32 H 1.08998 * 109.47193 * 295.00272 * 4 2 1 33 33 H 1.08998 * 109.47256 * 59.99872 * 5 4 2 34 34 H 1.08998 * 109.47322 * 300.00192 * 5 4 2 35 35 H 0.97007 * 119.99384 * 355.54203 * 9 7 6 36 36 H 1.07999 * 119.97962 * 359.97419 * 11 10 9 37 37 H 1.07997 * 119.69122 * 179.97438 * 12 11 10 38 38 H 1.08005 * 119.71162 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.02843 * 179.97438 * 14 13 12 40 40 H 0.96999 * 120.00099 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.8310 1.1879 6 8 4.0490 -1.5149 2.3738 7 6 5.3794 -1.6948 2.4753 8 8 6.1160 -1.2910 1.5973 9 7 5.8940 -2.3273 3.5485 10 6 7.2579 -2.5958 3.6101 11 6 8.1708 -1.7074 3.0628 12 6 9.5244 -1.9795 3.1265 13 6 9.9848 -3.1390 3.7364 14 6 9.1084 -4.0306 4.2833 15 6 7.7253 -3.7749 4.2365 16 6 6.8129 -4.6887 4.8046 17 1 5.8486 -4.8459 4.3442 18 6 7.1572 -5.3917 5.9647 19 7 8.3559 -5.2658 6.4744 20 14 5.9059 -6.5095 6.7857 21 1 5.4901 -7.5705 5.8335 22 1 6.5135 -7.1335 7.9884 23 1 4.7192 -5.7127 7.1879 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6054 -1.7199 1.2952 32 1 1.7517 -0.1583 2.1370 33 1 3.9995 0.1675 1.1420 34 1 3.8533 -1.3939 0.3002 35 1 5.3134 -2.5955 4.2779 36 1 7.8239 -0.8027 2.5857 37 1 10.2306 -1.2838 2.6980 38 1 11.0457 -3.3368 3.7783 39 1 9.4762 -4.9298 4.7551 40 1 8.5948 -5.7533 7.2783 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194874630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:09 Heat of formation + Delta-G solvation = -96.901976 kcal Electronic energy + Delta-G solvation = -20992.258333 eV Core-core repulsion = 17770.438006 eV Total energy + Delta-G solvation = -3221.820327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.74552 -39.72248 -38.12438 -36.87316 -35.65283 -35.47456 -31.53835 -31.07925 -29.97195 -28.03537 -27.14400 -24.90230 -23.46676 -22.81093 -21.67636 -20.90584 -19.77225 -19.09854 -18.16971 -17.75684 -17.37002 -16.67259 -16.16079 -15.93647 -15.44557 -14.86522 -14.84459 -14.72881 -14.47711 -14.27985 -13.64528 -13.61043 -13.06139 -13.05118 -12.93760 -12.82253 -12.69333 -12.60448 -12.15187 -12.10794 -11.88815 -11.82940 -11.65722 -11.56071 -11.35675 -11.30843 -11.06192 -10.86881 -9.25351 -8.86327 -8.47133 -6.38644 0.80296 1.04254 1.23787 1.42965 1.52831 1.55307 1.87195 2.24316 2.80207 3.28745 3.66344 3.82869 3.86932 4.04097 4.18363 4.31572 4.40593 4.49034 4.61205 4.72453 4.74948 4.80688 4.87028 4.92605 5.02355 5.06667 5.08753 5.16309 5.26674 5.31747 5.33820 5.43098 5.44718 5.47762 5.75373 5.85408 6.10259 6.16694 6.24183 6.57731 6.68121 6.93279 6.97914 7.39686 8.41118 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.004197 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.673960 B = 6670.560925 C = 8072.805354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.155 4.155 4 C -0.107 4.107 5 C 0.079 3.921 6 O -0.371 6.371 7 C 0.638 3.362 8 O -0.596 6.596 9 N -0.616 5.616 10 C 0.024 3.976 11 C -0.105 4.105 12 C -0.215 4.215 13 C -0.120 4.120 14 C -0.161 4.161 15 C 0.072 3.928 16 C -0.493 4.493 17 H 0.077 0.923 18 C 0.035 3.965 19 N -0.835 5.835 20 Si 0.985 3.015 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.258 1.258 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.416 0.584 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.903 6.714 -6.216 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.212 4.212 4 C -0.145 4.145 5 C 0.005 3.995 6 O -0.285 6.285 7 C 0.393 3.607 8 O -0.488 6.488 9 N -0.265 5.265 10 C -0.069 4.069 11 C -0.126 4.126 12 C -0.235 4.235 13 C -0.138 4.138 14 C -0.181 4.181 15 C 0.068 3.932 16 C -0.523 4.523 17 H 0.095 0.905 18 C -0.179 4.179 19 N -0.462 5.462 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.196 1.196 23 H -0.182 1.182 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.526 6.862 -6.498 15.691 hybrid contribution -0.242 -0.573 0.657 0.905 sum -12.768 6.290 -5.841 15.385 Atomic orbital electron populations 1.21797 0.93308 1.02344 1.02572 1.21045 0.97068 0.96228 0.96616 1.21963 1.00742 0.95796 1.02698 1.21680 0.90129 1.02531 1.00152 1.23333 0.96109 0.96237 0.83843 1.86223 1.20998 1.74043 1.47217 1.18231 0.81479 0.78767 0.82261 1.90902 1.60221 1.55588 1.42048 1.41413 1.07830 1.58260 1.19022 1.17793 0.80674 0.96169 1.12280 1.20859 0.93186 0.98163 1.00346 1.20699 0.94426 1.00163 1.08198 1.20826 0.99081 0.95107 0.98811 1.21207 0.92961 1.00871 1.03036 1.17749 0.93787 0.89605 0.92021 1.19492 1.02145 1.21339 1.09366 0.90522 1.26692 0.97620 0.96484 0.97059 1.69825 1.20422 1.36258 1.19655 0.85190 0.78367 0.78098 0.77699 1.18817 1.19598 1.18210 0.92205 0.91489 0.92271 0.90762 0.93436 0.91377 0.92119 0.90414 0.90300 0.91164 0.91863 0.74642 0.87085 0.86189 0.86498 0.86289 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.19 71.98 0.66 -1.09 16 2 C -0.09 -1.40 2.92 -10.79 -0.03 -1.43 16 3 C -0.15 -2.34 8.95 71.98 0.64 -1.70 16 4 C -0.11 -2.08 5.06 30.60 0.15 -1.93 16 5 C 0.08 2.13 5.23 71.98 0.38 2.51 16 6 O -0.37 -12.76 10.27 -55.48 -0.57 -13.33 16 7 C 0.64 26.78 8.59 129.79 1.11 27.90 16 8 O -0.60 -27.73 13.54 19.80 0.27 -27.46 16 9 N -0.62 -27.06 4.97 -428.22 -2.13 -29.18 16 10 C 0.02 1.21 6.34 38.87 0.25 1.46 16 11 C -0.11 -5.12 8.69 22.36 0.19 -4.92 16 12 C -0.22 -9.81 10.04 22.42 0.22 -9.59 16 13 C -0.12 -5.58 9.96 22.00 0.22 -5.36 16 14 C -0.16 -8.38 8.61 22.46 0.19 -8.18 16 15 C 0.07 3.82 5.56 -21.18 -0.12 3.71 16 16 C -0.49 -25.29 8.22 23.38 0.19 -25.10 16 17 H 0.08 3.78 7.63 -2.91 -0.02 3.75 16 18 C 0.03 1.69 5.42 85.25 0.46 2.15 16 19 N -0.83 -42.16 10.62 21.83 0.23 -41.93 16 20 Si 0.99 36.93 29.56 68.60 2.03 38.96 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 23 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 0.83 6.57 -2.39 -0.02 0.81 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.89 6.56 -2.39 -0.02 1.87 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.42 16.81 8.21 -92.70 -0.76 16.05 16 36 H 0.11 5.34 6.19 -2.91 -0.02 5.32 16 37 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.12 6.43 6.15 -2.91 -0.02 6.41 16 40 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 Total: -1.00 -60.30 332.06 4.65 -55.66 By element: Atomic # 1 Polarization: 38.59 SS G_CDS: 0.28 Total: 38.87 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.54 Total: -21.59 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -1.89 Total: -71.11 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.30 Total: -40.79 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Total: -60.30 4.65 -55.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194874630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.246 kcal (2) G-P(sol) polarization free energy of solvation -60.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds