Wall clock time and date at job start Mon Mar 30 2020 01:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 C 1.53000 * 109.46847 * 119.99577 * 2 1 3 5 5 C 1.52997 * 109.47390 * 65.00478 * 4 2 1 6 6 O 1.45192 * 109.47367 * 179.97438 * 5 4 2 7 7 C 1.34657 * 116.99819 * 179.97438 * 6 5 4 8 8 O 1.21509 * 119.99975 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99790 * 179.97438 * 7 6 5 10 10 C 1.39960 * 120.00073 * 184.68797 * 9 7 6 11 11 C 1.39289 * 119.94405 * 324.30221 * 10 9 7 12 12 C 1.38486 * 120.43018 * 179.97438 * 11 10 9 13 13 C 1.37689 * 120.32051 * 0.28128 * 12 11 10 14 14 C 1.40743 * 119.87995 * 359.42717 * 13 12 11 15 15 C 1.41413 * 120.20831 * 180.31702 * 14 13 12 16 16 H 1.07999 * 119.99959 * 331.92316 * 15 14 13 17 17 C 1.39929 * 119.99757 * 151.92126 * 15 14 13 18 18 N 1.30828 * 119.99964 * 161.35798 * 17 15 14 19 19 Si 1.86801 * 120.00194 * 341.35878 * 17 15 14 20 20 H 1.48497 * 109.47332 * 90.53754 * 19 17 15 21 21 H 1.48499 * 109.47249 * 210.54013 * 19 17 15 22 22 H 1.48504 * 109.46794 * 330.53589 * 19 17 15 23 23 C 1.38230 * 119.94919 * 144.28538 * 10 9 7 24 24 H 1.09000 * 109.47628 * 300.00310 * 1 2 3 25 25 H 1.08999 * 109.47163 * 60.00611 * 1 2 3 26 26 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47628 * 239.99690 * 2 1 3 28 28 H 1.09002 * 109.47289 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47110 * 299.99709 * 3 2 1 30 30 H 1.09005 * 109.47499 * 59.99642 * 3 2 1 31 31 H 1.08994 * 109.47774 * 305.00239 * 4 2 1 32 32 H 1.09007 * 109.47073 * 185.00162 * 4 2 1 33 33 H 1.09007 * 109.47199 * 59.99212 * 5 4 2 34 34 H 1.09007 * 109.46755 * 299.99879 * 5 4 2 35 35 H 0.96999 * 120.00582 * 4.68174 * 9 7 6 36 36 H 1.07998 * 119.78800 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.84510 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.05945 * 179.69971 * 13 12 11 39 39 H 0.97002 * 120.00083 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.16246 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 8 2.1197 -2.8799 2.3734 7 6 1.8450 -4.1942 2.4755 8 8 1.2181 -4.7538 1.5978 9 7 2.2664 -4.8891 3.5506 10 6 2.0673 -6.2732 3.6113 11 6 0.9106 -6.8334 3.0742 12 6 0.7035 -8.2016 3.1283 13 6 1.6371 -9.0231 3.7193 14 6 2.8135 -8.4719 4.2607 15 6 3.7801 -9.3099 4.8634 16 1 3.4783 -10.2411 5.3196 17 6 5.1275 -8.9325 4.8686 18 7 5.9589 -9.4873 5.7127 19 14 5.7392 -7.6367 3.6702 20 1 5.6297 -6.2939 4.2947 21 1 7.1584 -7.9093 3.3282 22 1 4.9159 -7.6769 2.4350 23 6 3.0189 -7.0819 4.2038 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 2.0699 -2.6550 0.3004 34 1 0.5489 -2.2723 1.1422 35 1 2.7078 -4.4302 4.2823 36 1 0.1708 -6.1967 2.6118 37 1 -0.1965 -8.6260 2.7085 38 1 1.4691 -10.0891 3.7635 39 1 6.8931 -9.2260 5.7161 40 1 3.9163 -6.6486 4.6199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194879883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:13 Heat of formation + Delta-G solvation = -80.474635 kcal Electronic energy + Delta-G solvation = -20872.388406 eV Core-core repulsion = 17651.280422 eV Total energy + Delta-G solvation = -3221.107984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.43288 -38.28968 -37.13175 -35.86649 -34.47296 -33.37354 -30.38713 -30.16074 -28.51876 -27.50534 -25.18199 -23.94510 -21.98504 -21.64655 -20.41693 -19.90125 -18.56513 -17.56469 -16.67344 -16.33907 -16.01863 -15.40209 -15.03050 -14.53915 -14.33443 -14.20265 -13.80264 -13.55757 -12.99199 -12.84894 -12.66065 -12.47210 -12.13126 -12.03222 -11.94335 -11.54788 -11.25640 -11.11290 -11.01973 -10.96528 -10.80117 -10.59338 -10.39081 -10.35753 -9.98697 -9.71564 -9.32772 -9.13190 -7.66293 -7.26464 -6.97235 -4.51384 2.22935 2.48479 2.64804 3.05605 3.13527 3.29186 3.33746 3.96331 4.26009 4.49148 4.51218 4.54409 4.76670 4.93509 5.10913 5.25086 5.30584 5.33891 5.39864 5.48358 5.55683 5.63648 5.70087 5.82633 5.97432 6.00341 6.03586 6.26490 6.42044 6.47457 6.55754 6.69128 6.77793 7.08600 7.38297 7.39679 7.71263 7.76244 7.93192 8.09885 8.32005 8.57053 8.70086 8.78170 10.05185 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026001 B = 0.003804 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.614111 B = 7358.223428 C = 8195.254220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.146 4.146 4 C -0.116 4.116 5 C 0.085 3.915 6 O -0.375 6.375 7 C 0.644 3.356 8 O -0.554 6.554 9 N -0.647 5.647 10 C 0.182 3.818 11 C -0.231 4.231 12 C -0.074 4.074 13 C -0.211 4.211 14 C 0.106 3.894 15 C -0.447 4.447 16 H 0.093 0.907 17 C 0.085 3.915 18 N -0.807 5.807 19 Si 0.913 3.087 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.247 1.247 23 C -0.263 4.263 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.409 0.591 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.285 0.715 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 17.609 -7.554 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.154 4.154 5 C 0.010 3.990 6 O -0.290 6.290 7 C 0.397 3.603 8 O -0.442 6.442 9 N -0.297 5.297 10 C 0.091 3.909 11 C -0.252 4.252 12 C -0.093 4.093 13 C -0.231 4.231 14 C 0.102 3.898 15 C -0.475 4.475 16 H 0.111 0.889 17 C -0.134 4.134 18 N -0.432 5.432 19 Si 0.740 3.260 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.170 1.170 23 C -0.285 4.285 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.244 0.756 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.278 17.354 -7.921 19.793 hybrid contribution 0.669 0.741 -0.135 1.008 sum -4.609 18.095 -8.056 20.337 Atomic orbital electron populations 1.21957 0.94949 1.02267 1.01997 1.21040 0.96192 0.96380 0.97625 1.21819 1.01118 0.95423 1.01953 1.21664 1.02288 0.92381 0.99020 1.23034 0.99675 0.91271 0.84974 1.86197 1.74790 1.21939 1.46049 1.18097 0.79052 0.80372 0.82780 1.90990 1.42936 1.69463 1.40780 1.42120 1.61282 1.07182 1.19147 1.17289 0.94862 0.78386 1.00341 1.20500 0.98234 0.95179 1.11242 1.20560 0.97658 0.92988 0.98079 1.21087 0.97555 0.98194 1.06262 1.17476 0.92910 0.90463 0.88960 1.19453 0.90705 1.06489 1.30879 0.88919 1.26134 0.97040 0.95740 0.94439 1.69698 1.05918 1.38214 1.29322 0.86350 0.76988 0.79944 0.82726 1.19744 1.21923 1.17043 1.20835 0.99972 0.93736 1.13908 0.92419 0.92491 0.92216 0.90756 0.92501 0.92453 0.92497 0.90695 0.90700 0.91259 0.90972 0.75567 0.86877 0.88239 0.87911 0.90439 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.95 37.16 0.33 -0.80 16 2 C -0.09 -0.71 2.92 -90.62 -0.26 -0.97 16 3 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 4 C -0.12 -1.06 5.06 -26.73 -0.14 -1.19 16 5 C 0.09 1.05 5.23 37.16 0.19 1.24 16 6 O -0.37 -5.81 10.27 -40.37 -0.41 -6.22 16 7 C 0.64 12.16 8.59 54.05 0.46 12.62 16 8 O -0.55 -11.88 13.59 -19.28 -0.26 -12.14 16 9 N -0.65 -12.40 5.34 -14.31 -0.08 -12.47 16 10 C 0.18 4.11 6.28 -83.76 -0.53 3.58 16 11 C -0.23 -5.20 8.70 -39.10 -0.34 -5.54 16 12 C -0.07 -1.62 10.02 -39.69 -0.40 -2.01 16 13 C -0.21 -4.95 9.79 -38.84 -0.38 -5.33 16 14 C 0.11 2.68 5.14 -106.85 -0.55 2.13 16 15 C -0.45 -11.99 9.57 -37.74 -0.36 -12.36 16 16 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 17 C 0.09 2.23 5.41 -17.35 -0.09 2.14 16 18 N -0.81 -21.36 13.93 55.55 0.77 -20.59 16 19 Si 0.91 21.13 24.55 -169.99 -4.17 16.96 16 20 H -0.27 -6.00 6.44 56.52 0.36 -5.64 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.25 -6.03 7.04 56.52 0.40 -5.64 16 23 C -0.26 -6.35 7.21 -38.69 -0.28 -6.63 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.87 6.56 -51.93 -0.34 0.53 16 35 H 0.41 6.60 8.93 -40.82 -0.36 6.24 16 36 H 0.11 2.52 6.25 -52.49 -0.33 2.20 16 37 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 38 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 39 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 40 H 0.11 2.55 4.42 -52.49 -0.23 2.32 16 LS Contribution 328.78 15.07 4.95 4.95 Total: -1.00 -29.42 328.78 -7.05 -36.46 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.85 Total: 6.77 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -1.99 Total: -13.72 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.70 Total: -33.06 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.68 Total: -18.36 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.17 Total: 16.96 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.42 -7.05 -36.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194879883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.010 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds