Wall clock time and date at job start Mon Mar 30 2020 01:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 C 1.53000 * 109.46847 * 119.99577 * 2 1 3 5 5 C 1.52997 * 109.47390 * 65.00478 * 4 2 1 6 6 O 1.45192 * 109.47367 * 179.97438 * 5 4 2 7 7 C 1.34657 * 116.99819 * 179.97438 * 6 5 4 8 8 O 1.21509 * 119.99975 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99790 * 179.97438 * 7 6 5 10 10 C 1.39960 * 120.00073 * 184.68797 * 9 7 6 11 11 C 1.39289 * 119.94405 * 324.30221 * 10 9 7 12 12 C 1.38486 * 120.43018 * 179.97438 * 11 10 9 13 13 C 1.37689 * 120.32051 * 0.28128 * 12 11 10 14 14 C 1.40743 * 119.87995 * 359.42717 * 13 12 11 15 15 C 1.41413 * 120.20831 * 180.31702 * 14 13 12 16 16 H 1.07999 * 119.99959 * 331.92316 * 15 14 13 17 17 C 1.39929 * 119.99757 * 151.92126 * 15 14 13 18 18 N 1.30828 * 119.99964 * 161.35798 * 17 15 14 19 19 Si 1.86801 * 120.00194 * 341.35878 * 17 15 14 20 20 H 1.48497 * 109.47332 * 90.53754 * 19 17 15 21 21 H 1.48499 * 109.47249 * 210.54013 * 19 17 15 22 22 H 1.48504 * 109.46794 * 330.53589 * 19 17 15 23 23 C 1.38230 * 119.94919 * 144.28538 * 10 9 7 24 24 H 1.09000 * 109.47628 * 300.00310 * 1 2 3 25 25 H 1.08999 * 109.47163 * 60.00611 * 1 2 3 26 26 H 1.08997 * 109.47134 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47628 * 239.99690 * 2 1 3 28 28 H 1.09002 * 109.47289 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47110 * 299.99709 * 3 2 1 30 30 H 1.09005 * 109.47499 * 59.99642 * 3 2 1 31 31 H 1.08994 * 109.47774 * 305.00239 * 4 2 1 32 32 H 1.09007 * 109.47073 * 185.00162 * 4 2 1 33 33 H 1.09007 * 109.47199 * 59.99212 * 5 4 2 34 34 H 1.09007 * 109.46755 * 299.99879 * 5 4 2 35 35 H 0.96999 * 120.00582 * 4.68174 * 9 7 6 36 36 H 1.07998 * 119.78800 * 0.02562 * 11 10 9 37 37 H 1.08003 * 119.84510 * 180.02562 * 12 11 10 38 38 H 1.08002 * 120.05945 * 179.69971 * 13 12 11 39 39 H 0.97002 * 120.00083 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.16246 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 8 2.1197 -2.8799 2.3734 7 6 1.8450 -4.1942 2.4755 8 8 1.2181 -4.7538 1.5978 9 7 2.2664 -4.8891 3.5506 10 6 2.0673 -6.2732 3.6113 11 6 0.9106 -6.8334 3.0742 12 6 0.7035 -8.2016 3.1283 13 6 1.6371 -9.0231 3.7193 14 6 2.8135 -8.4719 4.2607 15 6 3.7801 -9.3099 4.8634 16 1 3.4783 -10.2411 5.3196 17 6 5.1275 -8.9325 4.8686 18 7 5.9589 -9.4873 5.7127 19 14 5.7392 -7.6367 3.6702 20 1 5.6297 -6.2939 4.2947 21 1 7.1584 -7.9093 3.3282 22 1 4.9159 -7.6769 2.4350 23 6 3.0189 -7.0819 4.2038 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2617 2.1370 32 1 3.1263 -0.6442 1.2953 33 1 2.0699 -2.6550 0.3004 34 1 0.5489 -2.2723 1.1422 35 1 2.7078 -4.4302 4.2823 36 1 0.1708 -6.1967 2.6118 37 1 -0.1965 -8.6260 2.7085 38 1 1.4691 -10.0891 3.7635 39 1 6.8931 -9.2260 5.7161 40 1 3.9163 -6.6486 4.6199 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194879883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:12 Heat of formation + Delta-G solvation = -97.631586 kcal Electronic energy + Delta-G solvation = -20873.132387 eV Core-core repulsion = 17651.280422 eV Total energy + Delta-G solvation = -3221.851965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.90562 -39.87870 -38.25890 -36.98668 -36.15576 -35.24351 -32.25474 -31.21867 -30.06733 -28.04649 -27.10933 -25.00453 -23.48176 -23.33529 -21.73253 -20.97675 -20.00995 -19.39148 -18.07028 -17.79002 -17.65420 -16.74559 -16.37812 -16.21073 -15.67784 -15.10466 -14.90731 -14.84962 -14.75965 -14.42452 -13.97621 -13.68675 -13.45608 -13.07245 -12.89399 -12.83603 -12.68439 -12.63196 -12.36084 -12.20275 -11.94114 -11.86298 -11.77577 -11.57623 -11.44815 -11.37793 -11.08305 -10.99260 -9.53993 -9.04096 -8.92666 -6.52670 0.56003 0.78162 1.00960 1.22409 1.34028 1.46184 1.69760 2.08558 2.58724 3.04643 3.48124 3.80258 3.83425 4.00111 4.16128 4.23424 4.29982 4.37769 4.51537 4.66237 4.72219 4.75847 4.79090 4.83330 4.87645 4.92219 4.96101 5.01478 5.07527 5.20592 5.27170 5.34537 5.42031 5.45828 5.59659 5.62198 5.84323 5.90200 6.19801 6.26941 6.42138 6.68926 6.80169 7.17628 8.15328 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026001 B = 0.003804 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.614111 B = 7358.223428 C = 8195.254220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.108 4.108 5 C 0.077 3.923 6 O -0.366 6.366 7 C 0.647 3.353 8 O -0.581 6.581 9 N -0.643 5.643 10 C 0.183 3.817 11 C -0.229 4.229 12 C -0.068 4.068 13 C -0.223 4.223 14 C 0.088 3.912 15 C -0.478 4.478 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.842 5.842 19 Si 0.960 3.040 20 H -0.253 1.253 21 H -0.276 1.276 22 H -0.267 1.267 23 C -0.271 4.271 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.423 0.577 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.295 0.705 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 20.079 -8.700 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.145 4.145 5 C 0.004 3.996 6 O -0.280 6.280 7 C 0.401 3.599 8 O -0.471 6.471 9 N -0.295 5.295 10 C 0.091 3.909 11 C -0.250 4.250 12 C -0.087 4.087 13 C -0.243 4.243 14 C 0.085 3.915 15 C -0.508 4.508 16 H 0.083 0.917 17 C -0.161 4.161 18 N -0.468 5.468 19 Si 0.785 3.215 20 H -0.179 1.179 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.292 4.292 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.261 0.739 36 H 0.138 0.862 37 H 0.152 0.848 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.770 19.865 -9.047 22.578 hybrid contribution 0.654 0.054 0.149 0.673 sum -5.115 19.919 -8.898 22.407 Atomic orbital electron populations 1.21965 0.94812 1.01766 1.02692 1.21045 0.96291 0.96974 0.96695 1.21802 1.01266 0.94472 1.02561 1.21682 1.02589 0.90106 1.00158 1.23402 0.99900 0.92659 0.83686 1.86233 1.74436 1.19956 1.47380 1.18121 0.78369 0.81273 0.82100 1.90967 1.44110 1.70360 1.41648 1.41981 1.61422 1.06137 1.19984 1.17305 0.94325 0.79903 0.99404 1.20778 0.98181 0.95685 1.10384 1.20907 0.98314 0.92644 0.96805 1.21293 0.97433 0.99099 1.06446 1.17652 0.93401 0.91126 0.89338 1.19449 0.91992 1.06349 1.32967 0.91675 1.26685 0.96776 0.97281 0.95347 1.69711 1.06694 1.39794 1.30554 0.85618 0.76887 0.78957 0.80040 1.17861 1.20255 1.19173 1.20871 1.00551 0.93454 1.14330 0.92061 0.91544 0.93277 0.90787 0.92288 0.91630 0.92155 0.90120 0.90355 0.91637 0.90788 0.73876 0.86235 0.84767 0.87051 0.89446 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.95 71.98 0.64 -1.32 16 2 C -0.09 -1.17 2.92 -10.79 -0.03 -1.21 16 3 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 4 C -0.11 -1.72 5.06 30.59 0.15 -1.56 16 5 C 0.08 1.76 5.23 71.98 0.38 2.14 16 6 O -0.37 -10.54 10.27 -55.67 -0.57 -11.11 16 7 C 0.65 23.16 8.59 129.79 1.11 24.27 16 8 O -0.58 -23.89 13.59 19.81 0.27 -23.62 16 9 N -0.64 -23.35 5.34 -429.60 -2.29 -25.64 16 10 C 0.18 7.95 6.28 38.09 0.24 8.19 16 11 C -0.23 -9.88 8.70 22.58 0.20 -9.69 16 12 C -0.07 -2.84 10.02 22.20 0.22 -2.61 16 13 C -0.22 -10.33 9.79 22.75 0.22 -10.11 16 14 C 0.09 4.50 5.14 -21.30 -0.11 4.39 16 15 C -0.48 -26.45 9.57 23.46 0.22 -26.22 16 16 H 0.07 3.83 8.06 -2.91 -0.02 3.80 16 17 C 0.05 2.90 5.41 85.25 0.46 3.36 16 18 N -0.84 -45.31 13.93 21.82 0.30 -45.01 16 19 Si 0.96 43.14 24.55 68.60 1.68 44.82 16 20 H -0.25 -10.53 6.44 99.48 0.64 -9.89 16 21 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.27 -12.80 7.04 99.48 0.70 -12.10 16 23 C -0.27 -12.84 7.21 22.85 0.16 -12.67 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.72 6.57 -2.39 -0.02 0.71 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.07 1.67 6.56 -2.38 -0.02 1.66 16 35 H 0.42 12.72 8.93 -92.71 -0.83 11.89 16 36 H 0.12 5.05 6.25 -2.91 -0.02 5.03 16 37 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 38 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 39 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 40 H 0.11 5.06 4.42 -2.91 -0.01 5.05 16 Total: -1.00 -62.37 328.78 4.08 -58.29 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.14 Total: 26.13 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 4.54 Total: -23.86 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -1.99 Total: -70.65 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.30 Total: -34.73 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.68 Total: 44.82 kcal Total: -62.37 4.08 -58.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194879883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.341 kcal (2) G-P(sol) polarization free energy of solvation -62.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds