Wall clock time and date at job start Mon Mar 30 2020 01:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47515 * 2 1 4 4 C 1.52999 * 109.47274 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46958 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99650 * 269.99400 * 5 4 3 7 7 H 1.08007 * 120.00160 * 320.86174 * 6 5 4 8 8 C 1.38811 * 120.00153 * 140.86317 * 6 5 4 9 9 N 1.31618 * 119.99752 * 336.85717 * 8 6 5 10 10 Si 1.86801 * 120.00127 * 156.84767 * 8 6 5 11 11 H 1.48507 * 109.46863 * 90.00339 * 10 8 6 12 12 H 1.48500 * 109.47146 * 209.99973 * 10 8 6 13 13 H 1.48491 * 109.47324 * 330.00718 * 10 8 6 14 14 C 1.46497 * 120.00353 * 89.99980 * 5 4 3 15 15 C 1.50697 * 109.47269 * 84.13442 * 14 5 4 16 16 C 1.38257 * 119.92734 * 265.18925 * 15 14 5 17 17 C 1.38239 * 120.14033 * 179.75387 * 16 15 14 18 18 C 1.38544 * 120.02864 * 0.42850 * 17 16 15 19 19 C 1.39264 * 119.82947 * 359.57161 * 18 17 16 20 20 C 1.38236 * 119.92779 * 85.17438 * 15 14 5 21 21 O 1.36498 * 108.64380 * 180.24847 * 19 18 17 22 22 C 1.43986 * 105.48466 * 342.72211 * 21 19 18 23 23 O 1.36508 * 131.53057 * 179.88645 * 18 17 16 24 24 H 1.09000 * 109.47153 * 300.00477 * 1 2 3 25 25 H 1.09003 * 109.46813 * 60.00188 * 1 2 3 26 26 H 1.08992 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47153 * 239.99523 * 2 1 3 28 28 H 1.09003 * 109.46813 * 119.99811 * 2 1 3 29 29 H 1.09000 * 109.47300 * 59.99613 * 3 2 1 30 30 H 1.09003 * 109.46926 * 299.99742 * 3 2 1 31 31 H 1.09000 * 109.47474 * 59.99473 * 4 3 2 32 32 H 1.09003 * 109.46732 * 299.99615 * 4 3 2 33 33 H 0.97005 * 119.99898 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.46870 * 324.13393 * 14 5 4 35 35 H 1.09001 * 109.47094 * 204.13504 * 14 5 4 36 36 H 1.07997 * 119.93063 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.98279 * 180.32941 * 17 16 15 38 38 H 1.07997 * 119.98841 * 0.02562 * 20 15 14 39 39 H 1.09000 * 110.57585 * 268.55024 * 22 21 19 40 40 H 1.08999 * 110.57182 * 145.67619 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2863 3.4697 -1.1857 7 1 4.7232 2.9356 -2.0166 8 6 3.9558 4.8112 -1.3198 9 7 3.0443 5.3460 -0.5352 10 14 4.8047 5.8575 -2.6136 11 1 4.0349 5.7972 -3.8821 12 1 4.8755 7.2646 -2.1440 13 1 6.1784 5.3426 -2.8434 14 6 4.3032 3.5135 1.2689 15 6 5.6777 3.1604 1.7758 16 6 5.8346 2.1278 2.6817 17 6 7.0941 1.7968 3.1457 18 6 8.2018 2.5057 2.7101 19 6 8.0438 3.5457 1.7975 20 6 6.7790 3.8693 1.3337 21 8 9.2712 4.0770 1.5245 22 6 10.1315 3.6224 2.5859 23 8 9.5283 2.3852 3.0089 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9331 0.9286 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 2.8131 6.2834 -0.6291 34 1 3.5560 3.2051 2.0002 35 1 4.2383 4.5907 1.1153 36 1 4.9718 1.5764 3.0250 37 1 7.2143 0.9863 3.8493 38 1 6.6536 4.6755 0.6261 39 1 10.1434 4.3423 3.4043 40 1 11.1408 3.4485 2.2128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204055003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:35 Heat of formation + Delta-G solvation = -30.487743 kcal Electronic energy + Delta-G solvation = -21677.936466 eV Core-core repulsion = 18458.996076 eV Total energy + Delta-G solvation = -3218.940389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.75554 -37.88467 -35.97537 -35.89836 -33.94141 -31.46203 -30.42166 -29.80136 -27.79641 -26.13505 -24.93593 -23.82014 -22.43679 -21.77646 -20.76852 -19.88858 -17.54348 -17.35353 -16.97413 -16.44745 -15.75308 -14.84196 -14.74791 -14.08088 -14.07238 -13.76900 -13.51542 -13.37455 -13.28787 -13.00891 -12.65727 -12.48177 -12.16893 -11.92716 -11.69582 -11.29938 -10.94700 -10.78590 -10.72434 -10.55214 -10.52673 -10.37022 -10.19372 -9.96835 -9.89523 -9.62382 -8.52372 -8.28527 -7.56775 -6.63254 -5.88964 -3.40552 1.65297 1.76062 3.10469 3.32615 3.41534 3.46666 3.74780 4.10069 4.46230 4.82517 4.95053 5.01979 5.24876 5.35521 5.48102 5.49482 5.55626 5.68043 5.74194 5.77451 5.82943 6.03274 6.08497 6.23329 6.38491 6.42571 6.44580 6.48919 6.57146 6.63171 6.68960 6.71636 6.84002 6.94141 7.10592 7.22284 7.32486 7.49260 7.59591 7.79420 8.47415 9.11596 9.73501 10.34143 11.13235 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.006296 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.928470 B = 4445.864285 C = 6151.591493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.574 5.574 6 C -0.261 4.261 7 H 0.059 0.941 8 C 0.019 3.981 9 N -0.879 5.879 10 Si 0.887 3.113 11 H -0.284 1.284 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.186 3.814 15 C -0.061 4.061 16 C -0.116 4.116 17 C -0.103 4.103 18 C 0.001 3.999 19 C 0.025 3.975 20 C -0.078 4.078 21 O -0.313 6.313 22 C 0.214 3.786 23 O -0.318 6.318 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.256 0.744 34 H 0.040 0.960 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.124 0.876 38 H 0.133 0.867 39 H 0.076 0.924 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.103 -5.591 7.169 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.172 4.172 4 C 0.023 3.977 5 N -0.292 5.292 6 C -0.391 4.391 7 H 0.077 0.923 8 C -0.183 4.183 9 N -0.519 5.519 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.059 3.941 15 C -0.065 4.065 16 C -0.135 4.135 17 C -0.122 4.122 18 C -0.043 4.043 19 C -0.019 4.019 20 C -0.097 4.097 21 O -0.230 6.230 22 C 0.102 3.898 23 O -0.235 6.235 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.114 0.886 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.209 -5.445 7.065 10.330 hybrid contribution 0.733 0.708 -0.659 1.213 sum 5.942 -4.737 6.406 9.939 Atomic orbital electron populations 1.21758 0.96833 1.00344 1.01676 1.21533 0.95065 0.98693 1.00840 1.22131 0.98971 0.93846 1.02239 1.20936 0.91436 0.87080 0.98283 1.43711 1.73565 1.10378 1.01542 1.18983 1.35182 0.93423 0.91475 0.92332 1.25169 0.96068 0.99277 0.97753 1.70072 1.28159 1.13001 1.40699 0.86564 0.80305 0.79895 0.81711 1.21109 1.21343 1.20085 1.19864 0.86506 1.00841 0.86865 1.21180 0.98777 0.93477 0.93073 1.20851 0.95555 0.98382 0.98720 1.19945 0.89189 1.00938 1.02081 1.19653 0.84035 0.99597 1.01002 1.19895 0.86750 0.96078 0.99146 1.20108 0.86882 1.01771 1.00978 1.87340 1.17819 1.71215 1.46611 1.25455 0.94408 0.82465 0.87520 1.87274 1.17687 1.37457 1.81035 0.93113 0.92949 0.93776 0.92763 0.92991 0.93001 0.91773 0.94046 0.94832 0.93432 0.94200 0.88570 0.85303 0.85808 0.84914 0.90656 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.01 16 3 C -0.13 -2.49 5.54 -26.73 -0.15 -2.64 16 4 C 0.15 3.00 5.69 -4.04 -0.02 2.98 16 5 N -0.57 -13.42 2.40 -174.61 -0.42 -13.84 16 6 C -0.26 -6.82 9.42 -15.06 -0.14 -6.96 16 7 H 0.06 1.57 7.93 -52.48 -0.42 1.15 16 8 C 0.02 0.49 4.82 -17.43 -0.08 0.41 16 9 N -0.88 -23.97 11.80 55.49 0.66 -23.31 16 10 Si 0.89 20.97 29.61 -169.99 -5.03 15.93 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 14 C 0.19 4.06 5.36 -5.20 -0.03 4.03 16 15 C -0.06 -1.21 5.45 -104.62 -0.57 -1.78 16 16 C -0.12 -1.95 9.56 -39.57 -0.38 -2.33 16 17 C -0.10 -1.65 10.06 -39.47 -0.40 -2.05 16 18 C 0.00 0.02 7.15 -39.09 -0.28 -0.26 16 19 C 0.03 0.48 7.15 -39.09 -0.28 0.20 16 20 C -0.08 -1.58 9.73 -39.47 -0.38 -1.97 16 21 O -0.31 -5.51 11.40 -45.68 -0.52 -6.03 16 22 C 0.21 2.81 8.89 101.05 0.90 3.71 16 23 O -0.32 -5.09 11.40 -45.71 -0.52 -5.61 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 32 H 0.03 0.62 7.96 -51.93 -0.41 0.20 16 33 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.04 0.82 8.02 -51.93 -0.42 0.41 16 35 H 0.10 2.38 5.78 -51.93 -0.30 2.08 16 36 H 0.13 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.13 2.87 8.06 -52.49 -0.42 2.44 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -28.61 336.10 -8.55 -37.16 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.17 Total: 0.96 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -1.61 Total: -10.32 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.24 Total: -37.15 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.04 Total: -11.65 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.61 -8.55 -37.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204055003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.670 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds