Wall clock time and date at job start Mon Mar 30 2020 01:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47515 * 2 1 4 4 C 1.52999 * 109.47274 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46958 * 180.02562 * 4 3 2 6 6 C 1.36937 * 119.99650 * 269.99400 * 5 4 3 7 7 H 1.08007 * 120.00160 * 320.86174 * 6 5 4 8 8 C 1.38811 * 120.00153 * 140.86317 * 6 5 4 9 9 N 1.31618 * 119.99752 * 336.85717 * 8 6 5 10 10 Si 1.86801 * 120.00127 * 156.84767 * 8 6 5 11 11 H 1.48507 * 109.46863 * 90.00339 * 10 8 6 12 12 H 1.48500 * 109.47146 * 209.99973 * 10 8 6 13 13 H 1.48491 * 109.47324 * 330.00718 * 10 8 6 14 14 C 1.46497 * 120.00353 * 89.99980 * 5 4 3 15 15 C 1.50697 * 109.47269 * 84.13442 * 14 5 4 16 16 C 1.38257 * 119.92734 * 265.18925 * 15 14 5 17 17 C 1.38239 * 120.14033 * 179.75387 * 16 15 14 18 18 C 1.38544 * 120.02864 * 0.42850 * 17 16 15 19 19 C 1.39264 * 119.82947 * 359.57161 * 18 17 16 20 20 C 1.38236 * 119.92779 * 85.17438 * 15 14 5 21 21 O 1.36498 * 108.64380 * 180.24847 * 19 18 17 22 22 C 1.43986 * 105.48466 * 342.72211 * 21 19 18 23 23 O 1.36508 * 131.53057 * 179.88645 * 18 17 16 24 24 H 1.09000 * 109.47153 * 300.00477 * 1 2 3 25 25 H 1.09003 * 109.46813 * 60.00188 * 1 2 3 26 26 H 1.08992 * 109.47309 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47153 * 239.99523 * 2 1 3 28 28 H 1.09003 * 109.46813 * 119.99811 * 2 1 3 29 29 H 1.09000 * 109.47300 * 59.99613 * 3 2 1 30 30 H 1.09003 * 109.46926 * 299.99742 * 3 2 1 31 31 H 1.09000 * 109.47474 * 59.99473 * 4 3 2 32 32 H 1.09003 * 109.46732 * 299.99615 * 4 3 2 33 33 H 0.97005 * 119.99898 * 180.02562 * 9 8 6 34 34 H 1.09004 * 109.46870 * 324.13393 * 14 5 4 35 35 H 1.09001 * 109.47094 * 204.13504 * 14 5 4 36 36 H 1.07997 * 119.93063 * 359.97438 * 16 15 14 37 37 H 1.08001 * 119.98279 * 180.32941 * 17 16 15 38 38 H 1.07997 * 119.98841 * 0.02562 * 20 15 14 39 39 H 1.09000 * 110.57585 * 268.55024 * 22 21 19 40 40 H 1.08999 * 110.57182 * 145.67619 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2863 3.4697 -1.1857 7 1 4.7232 2.9356 -2.0166 8 6 3.9558 4.8112 -1.3198 9 7 3.0443 5.3460 -0.5352 10 14 4.8047 5.8575 -2.6136 11 1 4.0349 5.7972 -3.8821 12 1 4.8755 7.2646 -2.1440 13 1 6.1784 5.3426 -2.8434 14 6 4.3032 3.5135 1.2689 15 6 5.6777 3.1604 1.7758 16 6 5.8346 2.1278 2.6817 17 6 7.0941 1.7968 3.1457 18 6 8.2018 2.5057 2.7101 19 6 8.0438 3.5457 1.7975 20 6 6.7790 3.8693 1.3337 21 8 9.2712 4.0770 1.5245 22 6 10.1315 3.6224 2.5859 23 8 9.5283 2.3852 3.0089 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.9331 0.9286 -0.8908 32 1 3.9337 0.9284 0.8892 33 1 2.8131 6.2834 -0.6291 34 1 3.5560 3.2051 2.0002 35 1 4.2383 4.5907 1.1153 36 1 4.9718 1.5764 3.0250 37 1 7.2143 0.9863 3.8493 38 1 6.6536 4.6755 0.6261 39 1 10.1434 4.3423 3.4043 40 1 11.1408 3.4485 2.2128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204055003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:35 Heat of formation + Delta-G solvation = -45.178301 kcal Electronic energy + Delta-G solvation = -21678.573496 eV Core-core repulsion = 18458.996076 eV Total energy + Delta-G solvation = -3219.577420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.03576 -39.36848 -37.52883 -37.20865 -35.44640 -33.31497 -31.86433 -31.19432 -29.31549 -27.62099 -26.35846 -25.40040 -23.83369 -23.21256 -22.21663 -21.47389 -19.00246 -18.79984 -18.26231 -18.03079 -17.08900 -16.66544 -16.21483 -15.72312 -15.38228 -15.30953 -15.12630 -14.75764 -14.71205 -14.31806 -13.93725 -13.79584 -13.66601 -13.30225 -13.19517 -13.10781 -12.70922 -12.47835 -12.34266 -12.12652 -11.86229 -11.81450 -11.74896 -11.62093 -11.44756 -11.19083 -10.51818 -9.71579 -8.93080 -8.54850 -7.87853 -5.42932 0.25066 0.35398 1.39708 1.44671 1.52986 1.86392 2.47320 2.59952 2.69351 3.23199 3.58750 3.81637 3.85623 4.03769 4.20532 4.23807 4.28243 4.32674 4.37671 4.43169 4.50665 4.61852 4.64175 4.88775 4.94544 5.07187 5.12464 5.15196 5.16565 5.19826 5.24311 5.39151 5.42666 5.53469 5.57457 5.60121 5.66317 5.79334 5.86479 6.23414 6.48467 7.16864 7.85324 8.39313 9.10340 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.006296 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.928470 B = 4445.864285 C = 6151.591493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.146 3.854 5 N -0.588 5.588 6 C -0.265 4.265 7 H 0.046 0.954 8 C -0.020 4.020 9 N -0.904 5.904 10 Si 0.936 3.064 11 H -0.282 1.282 12 H -0.289 1.289 13 H -0.279 1.279 14 C 0.194 3.806 15 C -0.075 4.075 16 C -0.104 4.104 17 C -0.092 4.092 18 C 0.004 3.996 19 C 0.011 3.989 20 C -0.101 4.101 21 O -0.335 6.335 22 C 0.205 3.795 23 O -0.321 6.321 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.026 0.974 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.252 0.748 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.151 -7.742 8.848 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.160 4.160 4 C 0.021 3.979 5 N -0.308 5.308 6 C -0.396 4.396 7 H 0.063 0.937 8 C -0.219 4.219 9 N -0.547 5.547 10 Si 0.764 3.236 11 H -0.208 1.208 12 H -0.215 1.215 13 H -0.204 1.204 14 C 0.068 3.932 15 C -0.078 4.078 16 C -0.123 4.123 17 C -0.111 4.111 18 C -0.040 4.040 19 C -0.033 4.033 20 C -0.121 4.121 21 O -0.252 6.252 22 C 0.094 3.906 23 O -0.238 6.238 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.175 0.825 37 H 0.180 0.820 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.277 -7.609 8.755 13.190 hybrid contribution 0.538 1.340 -1.104 1.818 sum 6.816 -6.269 7.652 12.013 Atomic orbital electron populations 1.21740 0.95649 1.01847 1.01222 1.21467 0.96089 0.95748 1.02050 1.21950 0.98025 0.96202 0.99785 1.21050 0.92166 0.85552 0.99094 1.43885 1.74374 1.11331 1.01181 1.19056 1.34416 0.93815 0.92325 0.93669 1.25642 0.96688 1.00092 0.99446 1.70152 1.29468 1.12826 1.42232 0.85786 0.79193 0.78538 0.80042 1.20829 1.21450 1.20441 1.19630 0.88318 0.98724 0.86538 1.20891 0.97021 0.95050 0.94872 1.21075 0.97117 0.96965 0.97133 1.20330 0.88084 1.01018 1.01624 1.19908 0.85166 0.98826 1.00141 1.19911 0.86742 0.96980 0.99662 1.19945 0.88422 1.02035 1.01707 1.87305 1.17729 1.71706 1.48480 1.26067 0.94887 0.82044 0.87607 1.87262 1.16738 1.38825 1.80954 0.93073 0.94007 0.91248 0.92312 0.90925 0.94113 0.95517 0.94712 0.92303 0.93831 0.93246 0.92068 0.82508 0.82002 0.87904 0.88062 0.82211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.91 71.98 0.71 -3.00 16 2 C -0.12 -3.25 5.93 30.59 0.18 -3.07 16 3 C -0.12 -4.52 5.54 30.59 0.17 -4.35 16 4 C 0.15 5.87 5.69 86.38 0.49 6.36 16 5 N -0.59 -28.14 2.40 -706.33 -1.69 -29.83 16 6 C -0.27 -14.39 9.42 84.03 0.79 -13.60 16 7 H 0.05 2.53 7.93 -2.91 -0.02 2.50 16 8 C -0.02 -1.09 4.82 84.86 0.41 -0.68 16 9 N -0.90 -51.39 11.80 21.65 0.26 -51.14 16 10 Si 0.94 44.77 29.61 68.60 2.03 46.80 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 14 C 0.19 8.67 5.36 85.63 0.46 9.13 16 15 C -0.08 -2.95 5.45 -19.86 -0.11 -3.06 16 16 C -0.10 -3.23 9.56 22.27 0.21 -3.01 16 17 C -0.09 -2.63 10.06 22.34 0.22 -2.40 16 18 C 0.00 0.13 7.15 22.59 0.16 0.29 16 19 C 0.01 0.41 7.15 22.59 0.16 0.58 16 20 C -0.10 -4.24 9.73 22.34 0.22 -4.03 16 21 O -0.34 -11.52 11.40 -76.03 -0.87 -12.38 16 22 C 0.20 4.81 8.89 113.37 1.01 5.82 16 23 O -0.32 -9.29 11.40 -76.14 -0.87 -10.16 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.03 1.42 8.04 -2.39 -0.02 1.40 16 32 H 0.06 2.04 7.96 -2.39 -0.02 2.02 16 33 H 0.25 13.94 8.31 -92.70 -0.77 13.17 16 34 H 0.05 2.05 8.02 -2.38 -0.02 2.03 16 35 H 0.06 3.18 5.78 -2.39 -0.01 3.17 16 36 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16 37 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.16 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -64.34 336.10 4.96 -59.37 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.01 Total: 12.37 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 5.09 Total: -15.03 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.44 Total: -80.97 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.74 Total: -22.54 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.34 4.96 -59.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204055003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.196 kcal (2) G-P(sol) polarization free energy of solvation -64.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds