Wall clock time and date at job start Mon Mar 30 2020 01:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47188 * 2 1 4 4 C 1.53000 * 109.47542 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47249 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99980 * 269.72555 * 5 4 3 7 7 H 1.08000 * 120.00018 * 5.73871 * 6 5 4 8 8 C 1.38820 * 119.99859 * 185.73062 * 6 5 4 9 9 N 1.31618 * 119.99871 * 354.97951 * 8 6 5 10 10 Si 1.86796 * 119.99668 * 174.97404 * 8 6 5 11 11 H 1.48497 * 109.47500 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47039 * 120.00722 * 10 8 6 13 13 H 1.48499 * 109.47333 * 240.00345 * 10 8 6 14 14 C 1.46497 * 120.00162 * 90.00369 * 5 4 3 15 15 C 1.50703 * 109.47251 * 85.41360 * 14 5 4 16 16 C 1.38360 * 119.84857 * 275.04172 * 15 14 5 17 17 C 1.37949 * 120.14867 * 179.72042 * 16 15 14 18 18 C 1.39633 * 119.84660 * 0.57304 * 17 16 15 19 19 C 1.47720 * 120.14756 * 179.68092 * 18 17 16 20 20 O 1.21477 * 119.99785 * 180.02562 * 19 18 17 21 21 O 1.34706 * 120.00630 * 0.02562 * 19 18 17 22 22 C 1.39626 * 119.69868 * 359.69859 * 18 17 16 23 23 C 1.37944 * 119.85044 * 0.02562 * 22 18 17 24 24 H 1.09001 * 109.46984 * 299.99584 * 1 2 3 25 25 H 1.08993 * 109.47532 * 59.99858 * 1 2 3 26 26 H 1.09002 * 109.46659 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46984 * 240.00416 * 2 1 3 28 28 H 1.08997 * 109.47986 * 120.00307 * 2 1 3 29 29 H 1.09001 * 109.46818 * 60.00314 * 3 2 1 30 30 H 1.08996 * 109.47506 * 300.00505 * 3 2 1 31 31 H 1.09001 * 109.46777 * 60.00326 * 4 3 2 32 32 H 1.08996 * 109.47162 * 300.00751 * 4 3 2 33 33 H 0.97004 * 119.99765 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47678 * 205.41788 * 14 5 4 35 35 H 1.09002 * 109.47257 * 325.41884 * 14 5 4 36 36 H 1.07999 * 119.92522 * 359.97438 * 16 15 14 37 37 H 1.08000 * 120.07660 * 180.27527 * 17 16 15 38 38 H 0.96701 * 117.00567 * 179.97438 * 21 19 18 39 39 H 1.08003 * 120.07691 * 179.97438 * 22 18 17 40 40 H 1.07993 * 119.92456 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.2923 3.4678 -1.1844 7 1 4.0301 2.9924 -2.1180 8 6 4.8664 4.7317 -1.1862 9 7 5.0949 5.3523 -0.0482 10 14 5.3149 5.5514 -2.8036 11 1 4.9586 4.6518 -3.9301 12 1 4.5681 6.8283 -2.9352 13 1 6.7739 5.8262 -2.8316 14 6 4.3019 3.5140 1.2703 15 6 5.6880 3.1858 1.7625 16 6 5.9027 2.0338 2.4981 17 6 7.1700 1.7245 2.9469 18 6 8.2350 2.5832 2.6674 19 6 9.5935 2.2620 3.1507 20 8 10.5180 3.0112 2.9064 21 8 9.8072 1.1384 3.8624 22 6 8.0101 3.7469 1.9294 23 6 6.7388 4.0412 1.4819 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9337 0.9287 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 5.4964 6.2353 -0.0494 34 1 4.2146 4.5902 1.1212 35 1 3.5681 3.1886 2.0076 36 1 5.0771 1.3732 2.7179 37 1 7.3371 0.8227 3.5172 38 1 10.7129 0.9706 4.1567 39 1 8.8293 4.4156 1.7100 40 1 6.5634 4.9411 0.9113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204156699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:53 Heat of formation + Delta-G solvation = -44.076939 kcal Electronic energy + Delta-G solvation = -21481.816751 eV Core-core repulsion = 18262.287090 eV Total energy + Delta-G solvation = -3219.529661 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.96200 -38.25368 -36.32588 -35.79417 -34.31921 -31.57693 -31.02220 -30.03123 -28.00383 -26.28165 -24.13853 -22.87022 -21.96686 -21.07191 -20.38607 -19.71628 -17.77763 -17.27031 -16.71481 -15.30910 -15.27558 -15.00061 -14.58111 -14.20769 -13.90026 -13.56679 -13.48220 -13.33733 -12.82907 -12.58844 -12.32908 -12.10799 -11.75806 -11.59424 -11.30429 -11.09893 -10.95715 -10.76100 -10.62552 -10.59877 -10.40545 -10.27782 -10.17395 -10.08656 -9.84445 -9.53737 -8.80732 -8.20052 -7.92319 -6.96998 -5.61994 -3.34333 1.37486 2.22194 3.09328 3.31378 3.36821 3.39194 3.40365 4.34904 4.60897 5.14016 5.26395 5.30562 5.40146 5.50716 5.62378 5.65396 5.67568 5.86664 6.07591 6.08754 6.20496 6.22749 6.27148 6.29281 6.38494 6.47390 6.52825 6.62351 6.64710 6.76614 6.84281 6.96041 7.00956 7.08786 7.39565 7.54448 7.72348 7.83558 8.00270 8.18762 8.50148 9.19465 9.73424 10.09063 11.08575 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.006012 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.593223 B = 4656.320850 C = 6464.347446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.137 4.137 4 C 0.144 3.856 5 N -0.591 5.591 6 C -0.201 4.201 7 H 0.078 0.922 8 C -0.027 4.027 9 N -0.911 5.911 10 Si 0.920 3.080 11 H -0.282 1.282 12 H -0.290 1.290 13 H -0.288 1.288 14 C 0.133 3.867 15 C -0.013 4.013 16 C -0.151 4.151 17 C -0.079 4.079 18 C -0.162 4.162 19 C 0.529 3.471 20 O -0.530 6.530 21 O -0.517 6.517 22 C -0.077 4.077 23 C -0.111 4.111 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.254 0.746 34 H 0.180 0.820 35 H 0.009 0.991 36 H 0.112 0.888 37 H 0.119 0.881 38 H 0.405 0.595 39 H 0.120 0.880 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.913 -7.194 4.916 8.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.018 3.982 5 N -0.309 5.309 6 C -0.330 4.330 7 H 0.096 0.904 8 C -0.217 4.217 9 N -0.566 5.566 10 Si 0.751 3.249 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.215 1.215 14 C 0.008 3.992 15 C -0.016 4.016 16 C -0.170 4.170 17 C -0.098 4.098 18 C -0.164 4.164 19 C 0.375 3.625 20 O -0.421 6.421 21 O -0.329 6.329 22 C -0.095 4.095 23 C -0.129 4.129 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.195 0.805 35 H 0.027 0.973 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.262 0.738 39 H 0.138 0.862 40 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.045 -6.778 4.634 8.277 hybrid contribution 1.080 -0.144 -0.474 1.188 sum 0.035 -6.922 4.161 8.076 Atomic orbital electron populations 1.21762 0.96635 1.00657 1.01627 1.21501 0.95170 0.98215 1.01214 1.22192 0.99044 0.94591 1.01826 1.20876 0.91605 0.86700 0.99069 1.44208 1.74560 1.09341 1.02797 1.19674 1.29708 0.97959 0.85651 0.90371 1.24687 1.01760 0.97766 0.97526 1.68925 1.50856 1.14785 1.21995 0.85879 0.78052 0.78996 0.81982 1.20717 1.21715 1.21524 1.21760 0.86632 1.06865 0.83901 1.21410 1.00428 0.90799 0.89012 1.21176 0.95969 0.98533 1.01346 1.21165 0.92420 0.97898 0.98284 1.18915 0.89328 1.00081 1.08074 1.21313 0.89849 0.77359 0.73930 1.90827 1.45241 1.49888 1.56116 1.84610 1.37774 1.43248 1.67221 1.21483 0.98573 0.94414 0.95049 1.23015 0.89529 1.03438 0.96898 0.93031 0.92970 0.93525 0.92572 0.92679 0.92796 0.92210 0.93884 0.94256 0.93314 0.80472 0.97256 0.86984 0.86295 0.73804 0.86249 0.79814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.82 16 3 C -0.14 -2.29 5.54 -26.73 -0.15 -2.44 16 4 C 0.14 2.76 5.69 -4.05 -0.02 2.74 16 5 N -0.59 -13.38 2.52 -174.61 -0.44 -13.82 16 6 C -0.20 -4.97 9.82 -15.05 -0.15 -5.11 16 7 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.03 -0.67 5.45 -17.43 -0.09 -0.76 16 9 N -0.91 -22.26 5.73 55.49 0.32 -21.94 16 10 Si 0.92 20.43 29.56 -169.99 -5.02 15.40 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.13 2.96 5.28 -5.19 -0.03 2.93 16 15 C -0.01 -0.28 5.47 -104.53 -0.57 -0.86 16 16 C -0.15 -2.85 9.32 -39.64 -0.37 -3.22 16 17 C -0.08 -1.41 9.62 -39.17 -0.38 -1.78 16 18 C -0.16 -3.07 5.87 -104.98 -0.62 -3.69 16 19 C 0.53 9.20 8.27 34.60 0.29 9.48 16 20 O -0.53 -10.40 17.13 -19.25 -0.33 -10.73 16 21 O -0.52 -6.88 12.68 -40.51 -0.51 -7.40 16 22 C -0.08 -1.55 9.60 -39.17 -0.38 -1.93 16 23 C -0.11 -2.41 9.19 -39.64 -0.36 -2.78 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 32 H 0.04 0.72 7.02 -51.93 -0.36 0.35 16 33 H 0.25 6.04 8.08 -40.82 -0.33 5.71 16 34 H 0.18 4.38 4.55 -82.43 -0.37 4.00 16 35 H 0.01 0.19 8.08 -51.93 -0.42 -0.22 16 36 H 0.11 1.91 7.42 -52.49 -0.39 1.52 16 37 H 0.12 1.83 7.61 -52.49 -0.40 1.43 16 38 H 0.40 3.29 9.11 45.56 0.42 3.71 16 39 H 0.12 2.35 7.65 -52.48 -0.40 1.94 16 40 H 0.19 4.29 4.53 -52.76 -0.24 4.05 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -26.96 330.81 -8.71 -35.67 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.09 Total: 8.49 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.62 Total: -10.66 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.12 Total: -35.76 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.84 Total: -18.13 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -26.96 -8.71 -35.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204156699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.409 kcal (2) G-P(sol) polarization free energy of solvation -26.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds