Wall clock time and date at job start Mon Mar 30 2020 01:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47188 * 2 1 4 4 C 1.53000 * 109.47542 * 179.97438 * 3 2 1 5 5 N 1.46491 * 109.47249 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99980 * 269.72555 * 5 4 3 7 7 H 1.08000 * 120.00018 * 5.73871 * 6 5 4 8 8 C 1.38820 * 119.99859 * 185.73062 * 6 5 4 9 9 N 1.31618 * 119.99871 * 354.97951 * 8 6 5 10 10 Si 1.86796 * 119.99668 * 174.97404 * 8 6 5 11 11 H 1.48497 * 109.47500 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47039 * 120.00722 * 10 8 6 13 13 H 1.48499 * 109.47333 * 240.00345 * 10 8 6 14 14 C 1.46497 * 120.00162 * 90.00369 * 5 4 3 15 15 C 1.50703 * 109.47251 * 85.41360 * 14 5 4 16 16 C 1.38360 * 119.84857 * 275.04172 * 15 14 5 17 17 C 1.37949 * 120.14867 * 179.72042 * 16 15 14 18 18 C 1.39633 * 119.84660 * 0.57304 * 17 16 15 19 19 C 1.47720 * 120.14756 * 179.68092 * 18 17 16 20 20 O 1.21477 * 119.99785 * 180.02562 * 19 18 17 21 21 O 1.34706 * 120.00630 * 0.02562 * 19 18 17 22 22 C 1.39626 * 119.69868 * 359.69859 * 18 17 16 23 23 C 1.37944 * 119.85044 * 0.02562 * 22 18 17 24 24 H 1.09001 * 109.46984 * 299.99584 * 1 2 3 25 25 H 1.08993 * 109.47532 * 59.99858 * 1 2 3 26 26 H 1.09002 * 109.46659 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46984 * 240.00416 * 2 1 3 28 28 H 1.08997 * 109.47986 * 120.00307 * 2 1 3 29 29 H 1.09001 * 109.46818 * 60.00314 * 3 2 1 30 30 H 1.08996 * 109.47506 * 300.00505 * 3 2 1 31 31 H 1.09001 * 109.46777 * 60.00326 * 4 3 2 32 32 H 1.08996 * 109.47162 * 300.00751 * 4 3 2 33 33 H 0.97004 * 119.99765 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47678 * 205.41788 * 14 5 4 35 35 H 1.09002 * 109.47257 * 325.41884 * 14 5 4 36 36 H 1.07999 * 119.92522 * 359.97438 * 16 15 14 37 37 H 1.08000 * 120.07660 * 180.27527 * 17 16 15 38 38 H 0.96701 * 117.00567 * 179.97438 * 21 19 18 39 39 H 1.08003 * 120.07691 * 179.97438 * 22 18 17 40 40 H 1.07993 * 119.92456 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.2923 3.4678 -1.1844 7 1 4.0301 2.9924 -2.1180 8 6 4.8664 4.7317 -1.1862 9 7 5.0949 5.3523 -0.0482 10 14 5.3149 5.5514 -2.8036 11 1 4.9586 4.6518 -3.9301 12 1 4.5681 6.8283 -2.9352 13 1 6.7739 5.8262 -2.8316 14 6 4.3019 3.5140 1.2703 15 6 5.6880 3.1858 1.7625 16 6 5.9027 2.0338 2.4981 17 6 7.1700 1.7245 2.9469 18 6 8.2350 2.5832 2.6674 19 6 9.5935 2.2620 3.1507 20 8 10.5180 3.0112 2.9064 21 8 9.8072 1.1384 3.8624 22 6 8.0101 3.7469 1.9294 23 6 6.7388 4.0412 1.4819 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9337 0.9287 -0.8892 32 1 3.9330 0.9288 0.8908 33 1 5.4964 6.2353 -0.0494 34 1 4.2146 4.5902 1.1212 35 1 3.5681 3.1886 2.0076 36 1 5.0771 1.3732 2.7179 37 1 7.3371 0.8227 3.5172 38 1 10.7129 0.9706 4.1567 39 1 8.8293 4.4156 1.7100 40 1 6.5634 4.9411 0.9113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204156699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:53 Heat of formation + Delta-G solvation = -56.872612 kcal Electronic energy + Delta-G solvation = -21482.371613 eV Core-core repulsion = 18262.287090 eV Total energy + Delta-G solvation = -3220.084523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.32178 -39.77515 -37.86376 -37.05814 -35.70018 -33.26919 -32.53711 -31.56995 -29.41256 -27.95476 -25.68351 -24.27705 -23.49476 -22.42479 -21.74251 -21.26953 -19.20928 -18.83372 -18.19716 -17.04669 -16.61681 -16.35489 -16.04942 -15.70445 -15.47686 -15.11818 -15.00171 -14.66230 -14.24587 -14.00380 -13.71898 -13.50374 -13.17973 -13.10835 -12.75728 -12.63924 -12.55033 -12.19806 -12.07515 -12.02862 -11.96119 -11.82260 -11.65776 -11.58172 -11.31133 -11.20932 -10.62564 -9.72508 -9.50228 -8.72615 -7.45419 -5.19745 -0.10584 0.69583 1.50805 1.55324 1.60604 1.66607 2.13493 2.53934 3.04051 3.31010 3.82300 4.01001 4.17698 4.18243 4.26475 4.34027 4.43393 4.51577 4.58021 4.76369 4.84475 4.90479 4.98932 5.02100 5.08070 5.10120 5.17508 5.21597 5.39047 5.42172 5.48063 5.52044 5.58221 5.61934 5.63702 5.84314 5.99415 6.18082 6.34297 6.70322 7.00595 7.34697 7.95788 8.27760 9.20486 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012675 B = 0.006012 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.593223 B = 4656.320850 C = 6464.347446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.125 4.125 4 C 0.143 3.857 5 N -0.603 5.603 6 C -0.218 4.218 7 H 0.073 0.927 8 C -0.063 4.063 9 N -0.914 5.914 10 Si 0.966 3.034 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.298 1.298 14 C 0.137 3.863 15 C -0.031 4.031 16 C -0.148 4.148 17 C -0.065 4.065 18 C -0.169 4.169 19 C 0.539 3.461 20 O -0.557 6.557 21 O -0.501 6.501 22 C -0.086 4.086 23 C -0.131 4.131 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.249 0.751 34 H 0.155 0.845 35 H 0.018 0.982 36 H 0.134 0.866 37 H 0.153 0.847 38 H 0.431 0.569 39 H 0.116 0.884 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.866 -9.542 6.021 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.165 4.165 4 C 0.017 3.983 5 N -0.322 5.322 6 C -0.347 4.347 7 H 0.091 0.909 8 C -0.252 4.252 9 N -0.568 5.568 10 Si 0.797 3.203 11 H -0.204 1.204 12 H -0.220 1.220 13 H -0.225 1.225 14 C 0.012 3.988 15 C -0.034 4.034 16 C -0.167 4.167 17 C -0.084 4.084 18 C -0.170 4.170 19 C 0.386 3.614 20 O -0.450 6.450 21 O -0.314 6.314 22 C -0.105 4.105 23 C -0.149 4.149 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.171 0.829 35 H 0.036 0.964 36 H 0.152 0.848 37 H 0.171 0.829 38 H 0.292 0.708 39 H 0.134 0.866 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.997 -9.162 5.766 10.871 hybrid contribution 1.111 0.531 -0.738 1.436 sum 0.114 -8.630 5.028 9.989 Atomic orbital electron populations 1.21740 0.95277 1.01949 1.01512 1.21451 0.96331 0.95722 1.01998 1.22027 0.97268 0.96741 1.00469 1.21010 0.92941 0.85022 0.99317 1.44339 1.75073 1.10555 1.02240 1.19789 1.30141 0.98383 0.86387 0.90877 1.25213 1.02242 0.98410 0.99360 1.69193 1.50635 1.14504 1.22494 0.85165 0.76896 0.78091 0.80116 1.20392 1.22028 1.22530 1.21469 0.87716 1.05554 0.84072 1.21343 0.99530 0.92075 0.90402 1.21347 0.97281 0.97701 1.00380 1.21463 0.91318 0.98347 0.97225 1.19106 0.90896 0.99564 1.07454 1.20942 0.88748 0.77907 0.73826 1.90828 1.45842 1.51094 1.57281 1.84524 1.40122 1.40852 1.65914 1.21448 0.97847 0.95427 0.95765 1.22792 0.90653 1.03424 0.98063 0.92936 0.93382 0.91517 0.92179 0.91473 0.93527 0.94158 0.94426 0.93007 0.93833 0.82919 0.96371 0.84831 0.82937 0.70760 0.86566 0.81810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.91 71.98 0.71 -2.47 16 2 C -0.12 -2.92 5.93 30.59 0.18 -2.74 16 3 C -0.13 -4.10 5.54 30.59 0.17 -3.93 16 4 C 0.14 5.35 5.69 86.38 0.49 5.84 16 5 N -0.60 -27.49 2.52 -706.35 -1.78 -29.26 16 6 C -0.22 -10.93 9.82 84.03 0.82 -10.11 16 7 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 8 C -0.06 -3.15 5.45 84.86 0.46 -2.69 16 9 N -0.91 -46.21 5.73 21.65 0.12 -46.08 16 10 Si 0.97 42.91 29.56 68.60 2.03 44.94 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 13 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 14 C 0.14 6.14 5.28 85.63 0.45 6.59 16 15 C -0.03 -1.29 5.47 -19.80 -0.11 -1.40 16 16 C -0.15 -5.27 9.32 22.23 0.21 -5.06 16 17 C -0.07 -2.12 9.62 22.54 0.22 -1.91 16 18 C -0.17 -6.07 5.87 -20.10 -0.12 -6.19 16 19 C 0.54 17.40 8.27 70.33 0.58 17.98 16 20 O -0.56 -21.04 17.13 19.91 0.34 -20.70 16 21 O -0.50 -11.30 12.68 -56.16 -0.71 -12.01 16 22 C -0.09 -3.52 9.60 22.54 0.22 -3.30 16 23 C -0.13 -5.82 9.19 22.23 0.20 -5.62 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.43 8.04 -2.39 -0.02 1.41 16 32 H 0.05 1.79 7.02 -2.39 -0.02 1.78 16 33 H 0.25 12.35 8.08 -92.71 -0.75 11.60 16 34 H 0.16 7.79 4.55 -62.61 -0.28 7.50 16 35 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 36 H 0.13 4.12 7.42 -2.91 -0.02 4.10 16 37 H 0.15 3.93 7.61 -2.91 -0.02 3.90 16 38 H 0.43 5.18 9.11 -74.06 -0.67 4.51 16 39 H 0.12 4.68 7.65 -2.91 -0.02 4.66 16 40 H 0.17 8.00 4.53 -3.45 -0.02 7.98 16 Total: -1.00 -58.28 330.81 4.62 -53.67 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.12 Total: 24.45 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 4.50 Total: -15.00 kcal Atomic # 7 Polarization: -73.69 SS G_CDS: -1.65 Total: -75.34 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -0.37 Total: -32.71 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -58.28 4.62 -53.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204156699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.206 kcal (2) G-P(sol) polarization free energy of solvation -58.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds