Wall clock time and date at job start Mon Mar 30 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99752 * 2 1 4 4 O 1.21279 * 120.00051 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99754 * 179.97438 * 3 2 1 6 6 C 1.53009 * 109.47057 * 59.99724 * 5 3 2 7 7 C 1.52998 * 109.47569 * 299.99782 * 5 3 2 8 8 O 1.42908 * 109.47172 * 179.97438 * 5 3 2 9 9 C 1.42899 * 114.00122 * 180.02562 * 8 5 3 10 10 H 1.09007 * 109.47092 * 30.00121 * 9 8 5 11 11 C 1.50696 * 109.46966 * 270.00321 * 9 8 5 12 12 H 1.08003 * 119.99826 * 330.47999 * 11 9 8 13 13 C 1.37880 * 119.99921 * 150.48943 * 11 9 8 14 14 N 1.31511 * 120.00269 * 2.23746 * 13 11 9 15 15 Si 1.86807 * 119.99689 * 182.24111 * 13 11 9 16 16 H 1.48497 * 109.46936 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47033 * 299.99380 * 15 13 11 18 18 H 1.48498 * 109.47424 * 59.99474 * 15 13 11 19 19 C 1.50700 * 109.47169 * 149.99675 * 9 8 5 20 20 C 1.38237 * 119.99410 * 38.48202 * 19 9 8 21 21 C 1.38241 * 119.99352 * 179.78689 * 20 19 9 22 22 C 1.38230 * 120.00160 * 0.44040 * 21 20 19 23 23 C 1.38240 * 120.00158 * 359.81066 * 22 21 20 24 24 C 1.38232 * 120.00295 * 218.75048 * 19 9 8 25 25 H 1.09006 * 109.46681 * 60.00842 * 1 2 3 26 26 H 1.09001 * 109.46805 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47697 * 300.00926 * 1 2 3 28 28 H 0.96995 * 119.99803 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46780 * 179.97438 * 6 5 3 30 30 H 1.08994 * 109.46851 * 299.99648 * 6 5 3 31 31 H 1.08997 * 109.47097 * 60.00063 * 6 5 3 32 32 H 1.09004 * 109.47023 * 299.99920 * 7 5 3 33 33 H 1.08995 * 109.46847 * 59.99784 * 7 5 3 34 34 H 1.09002 * 109.47488 * 180.02562 * 7 5 3 35 35 H 0.97000 * 119.99518 * 355.00623 * 14 13 11 36 36 H 1.07999 * 120.00601 * 359.97438 * 20 19 9 37 37 H 1.08000 * 119.99510 * 180.27289 * 21 20 19 38 38 H 1.08000 * 120.00177 * 179.83628 * 22 21 20 39 39 H 1.07994 * 119.99967 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.99658 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1563 0.4456 -1.2483 7 6 4.1554 0.4463 1.2502 8 8 4.1222 2.5146 -0.0001 9 6 5.5467 2.6274 -0.0002 10 1 5.9792 1.7686 -0.5137 11 6 6.0475 2.6678 1.4205 12 1 5.4256 3.0812 2.2007 13 6 7.2997 2.1771 1.7243 14 7 8.0745 1.7143 0.7677 15 14 7.8956 2.1696 3.4947 16 1 9.2636 1.5950 3.5541 17 1 7.9195 3.5604 4.0149 18 1 6.9774 1.3472 4.3227 19 6 5.9503 3.8933 -0.7114 20 6 5.2038 5.0453 -0.5488 21 6 5.5765 6.2077 -1.1977 22 6 6.6904 6.2156 -2.0162 23 6 7.4339 5.0622 -2.1828 24 6 7.0637 3.9010 -1.5306 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.9500 -0.8400 0.0004 29 1 5.2463 0.4460 -1.2481 30 1 3.7930 -0.5820 -1.2481 31 1 3.7933 0.9592 -2.1386 32 1 3.7918 0.9604 2.1399 33 1 3.7921 -0.5813 1.2503 34 1 5.2455 0.4468 1.2508 35 1 7.7388 1.6507 -0.1401 36 1 4.3311 5.0382 0.0874 37 1 4.9958 7.1089 -1.0672 38 1 6.9801 7.1230 -2.5252 39 1 8.3044 5.0685 -2.8220 40 1 7.6447 2.9998 -1.6606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222575396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:55 Heat of formation + Delta-G solvation = -59.702636 kcal Electronic energy + Delta-G solvation = -22427.732252 eV Core-core repulsion = 19207.525010 eV Total energy + Delta-G solvation = -3220.207242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.81101 -38.52014 -36.99830 -34.44404 -33.45644 -31.93063 -30.20200 -30.00319 -27.01507 -26.78690 -26.24109 -23.40133 -22.32942 -21.66638 -20.34101 -19.44268 -17.32719 -17.06740 -16.15915 -15.82963 -15.05921 -14.96393 -14.56386 -13.96401 -13.82396 -13.79266 -13.61920 -13.06388 -12.87961 -12.56356 -12.35445 -12.27915 -12.11580 -11.93125 -11.72557 -11.56994 -11.34126 -10.96901 -10.84487 -10.53448 -10.27602 -10.21849 -9.82140 -9.62946 -9.06206 -8.98554 -8.58457 -8.41362 -8.08801 -7.63145 -6.52164 -4.24780 2.23395 2.26186 2.98440 3.25871 3.35997 3.38989 3.56466 4.38162 4.57382 4.78121 5.02772 5.19296 5.24733 5.33437 5.46246 5.53767 5.63236 5.69700 5.76559 5.79098 5.86467 5.97277 6.14007 6.18464 6.28360 6.40294 6.45681 6.52351 6.53893 6.76233 6.88641 6.92015 7.05746 7.26447 7.36635 7.52253 7.64738 7.81535 7.92090 8.05024 8.48435 8.56444 8.65567 9.43024 10.81788 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.007596 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.706295 B = 3685.231799 C = 5058.045835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.739 5.739 3 C 0.527 3.473 4 O -0.522 6.522 5 C 0.113 3.887 6 C -0.176 4.176 7 C -0.164 4.164 8 O -0.359 6.359 9 C 0.224 3.776 10 H 0.042 0.958 11 C -0.594 4.594 12 H 0.060 0.940 13 C 0.028 3.972 14 N -0.900 5.900 15 Si 1.064 2.936 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.285 1.285 19 C -0.035 4.035 20 C -0.101 4.101 21 C -0.131 4.131 22 C -0.149 4.149 23 C -0.126 4.126 24 C -0.118 4.118 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.400 0.600 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.098 0.902 35 H 0.268 0.732 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.399 -4.494 -3.574 9.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.394 5.394 3 C 0.313 3.687 4 O -0.395 6.395 5 C 0.070 3.930 6 C -0.234 4.234 7 C -0.221 4.221 8 O -0.278 6.278 9 C 0.168 3.832 10 H 0.059 0.941 11 C -0.632 4.632 12 H 0.079 0.921 13 C -0.178 4.178 14 N -0.536 5.536 15 Si 0.891 3.109 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.036 4.036 20 C -0.119 4.119 21 C -0.149 4.149 22 C -0.167 4.167 23 C -0.145 4.145 24 C -0.136 4.136 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.234 0.766 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.663 -3.894 -2.618 8.150 hybrid contribution -0.854 -0.134 -0.863 1.222 sum -7.518 -4.027 -3.481 9.212 Atomic orbital electron populations 1.21468 0.79986 1.01731 1.02156 1.45763 1.07305 1.08714 1.77604 1.20545 0.89652 0.83401 0.75083 1.90667 1.70147 1.31321 1.47408 1.20961 0.89393 0.86743 0.95949 1.22438 1.03483 0.99703 0.97729 1.22419 1.05359 0.97421 0.96906 1.87927 1.24015 1.21058 1.94775 1.18978 0.77458 0.91173 0.95631 0.94065 1.22264 1.04535 1.43808 0.92547 0.92127 1.25807 0.93023 0.93162 1.05790 1.70875 1.36971 1.43359 1.02410 0.83605 0.76361 0.76848 0.74051 1.20643 1.21240 1.21163 1.20361 0.94055 0.97105 0.92096 1.20940 0.99705 0.92130 0.99140 1.21016 0.97489 0.97763 0.98617 1.20852 0.97038 0.97661 1.01135 1.20924 0.99505 0.93366 1.00658 1.20933 0.97347 0.98233 0.97104 0.92502 0.90930 0.92440 0.76610 0.90363 0.92036 0.92004 0.91763 0.93802 0.88360 0.91941 0.86329 0.87311 0.87456 0.87241 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 10.70 59.85 0.64 1.62 16 2 N -0.74 -9.75 5.50 -67.07 -0.37 -10.12 16 3 C 0.53 9.74 6.56 -10.99 -0.07 9.67 16 4 O -0.52 -11.80 16.50 -14.35 -0.24 -12.04 16 5 C 0.11 2.19 0.97 -91.77 -0.09 2.10 16 6 C -0.18 -2.89 8.26 37.16 0.31 -2.58 16 7 C -0.16 -3.03 7.51 37.16 0.28 -2.76 16 8 O -0.36 -8.49 8.48 -55.14 -0.47 -8.96 16 9 C 0.22 5.41 1.47 -29.04 -0.04 5.37 16 10 H 0.04 1.01 3.82 -51.92 -0.20 0.81 16 11 C -0.59 -15.58 6.29 -34.44 -0.22 -15.79 16 12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 13 C 0.03 0.72 5.24 -17.82 -0.09 0.63 16 14 N -0.90 -24.47 13.63 55.43 0.76 -23.71 16 15 Si 1.06 23.97 29.90 -169.99 -5.08 18.89 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 19 C -0.04 -0.84 4.96 -104.62 -0.52 -1.36 16 20 C -0.10 -2.28 9.36 -39.58 -0.37 -2.65 16 21 C -0.13 -2.55 10.05 -39.58 -0.40 -2.95 16 22 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16 23 C -0.13 -2.45 10.05 -39.58 -0.40 -2.84 16 24 C -0.12 -2.60 9.45 -39.59 -0.37 -2.97 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.40 4.11 7.67 -40.82 -0.31 3.80 16 29 H 0.08 1.39 6.10 -51.93 -0.32 1.07 16 30 H 0.06 0.78 7.56 -51.93 -0.39 0.38 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.04 0.63 7.56 -51.93 -0.39 0.23 16 34 H 0.10 2.10 5.99 -51.93 -0.31 1.79 16 35 H 0.27 7.13 5.08 -40.82 -0.21 6.93 16 36 H 0.12 2.77 7.73 -52.49 -0.41 2.36 16 37 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.12 2.56 6.80 -52.48 -0.36 2.20 16 LS Contribution 327.23 15.07 4.93 4.93 Total: -1.00 -31.81 327.23 -7.70 -39.51 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.48 Total: 9.16 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -1.74 Total: -17.67 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.39 Total: -33.83 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.70 Total: -21.00 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.08 Total: 18.89 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.81 -7.70 -39.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222575396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.194 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds