Wall clock time and date at job start Mon Mar 30 2020 02:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34777 * 119.99752 * 2 1 4 4 O 1.21279 * 120.00051 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99754 * 179.97438 * 3 2 1 6 6 C 1.53009 * 109.47057 * 59.99724 * 5 3 2 7 7 C 1.52998 * 109.47569 * 299.99782 * 5 3 2 8 8 O 1.42908 * 109.47172 * 179.97438 * 5 3 2 9 9 C 1.42899 * 114.00122 * 180.02562 * 8 5 3 10 10 H 1.09007 * 109.47092 * 30.00121 * 9 8 5 11 11 C 1.50696 * 109.46966 * 270.00321 * 9 8 5 12 12 H 1.08003 * 119.99826 * 330.47999 * 11 9 8 13 13 C 1.37880 * 119.99921 * 150.48943 * 11 9 8 14 14 N 1.31511 * 120.00269 * 2.23746 * 13 11 9 15 15 Si 1.86807 * 119.99689 * 182.24111 * 13 11 9 16 16 H 1.48497 * 109.46936 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.47033 * 299.99380 * 15 13 11 18 18 H 1.48498 * 109.47424 * 59.99474 * 15 13 11 19 19 C 1.50700 * 109.47169 * 149.99675 * 9 8 5 20 20 C 1.38237 * 119.99410 * 38.48202 * 19 9 8 21 21 C 1.38241 * 119.99352 * 179.78689 * 20 19 9 22 22 C 1.38230 * 120.00160 * 0.44040 * 21 20 19 23 23 C 1.38240 * 120.00158 * 359.81066 * 22 21 20 24 24 C 1.38232 * 120.00295 * 218.75048 * 19 9 8 25 25 H 1.09006 * 109.46681 * 60.00842 * 1 2 3 26 26 H 1.09001 * 109.46805 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47697 * 300.00926 * 1 2 3 28 28 H 0.96995 * 119.99803 * 179.97438 * 2 1 3 29 29 H 1.09002 * 109.46780 * 179.97438 * 6 5 3 30 30 H 1.08994 * 109.46851 * 299.99648 * 6 5 3 31 31 H 1.08997 * 109.47097 * 60.00063 * 6 5 3 32 32 H 1.09004 * 109.47023 * 299.99920 * 7 5 3 33 33 H 1.08995 * 109.46847 * 59.99784 * 7 5 3 34 34 H 1.09002 * 109.47488 * 180.02562 * 7 5 3 35 35 H 0.97000 * 119.99518 * 355.00623 * 14 13 11 36 36 H 1.07999 * 120.00601 * 359.97438 * 20 19 9 37 37 H 1.08000 * 119.99510 * 180.27289 * 21 20 19 38 38 H 1.08000 * 120.00177 * 179.83628 * 22 21 20 39 39 H 1.07994 * 119.99967 * 180.02562 * 23 22 21 40 40 H 1.08005 * 119.99658 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1563 0.4456 -1.2483 7 6 4.1554 0.4463 1.2502 8 8 4.1222 2.5146 -0.0001 9 6 5.5467 2.6274 -0.0002 10 1 5.9792 1.7686 -0.5137 11 6 6.0475 2.6678 1.4205 12 1 5.4256 3.0812 2.2007 13 6 7.2997 2.1771 1.7243 14 7 8.0745 1.7143 0.7677 15 14 7.8956 2.1696 3.4947 16 1 9.2636 1.5950 3.5541 17 1 7.9195 3.5604 4.0149 18 1 6.9774 1.3472 4.3227 19 6 5.9503 3.8933 -0.7114 20 6 5.2038 5.0453 -0.5488 21 6 5.5765 6.2077 -1.1977 22 6 6.6904 6.2156 -2.0162 23 6 7.4339 5.0622 -2.1828 24 6 7.0637 3.9010 -1.5306 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.9500 -0.8400 0.0004 29 1 5.2463 0.4460 -1.2481 30 1 3.7930 -0.5820 -1.2481 31 1 3.7933 0.9592 -2.1386 32 1 3.7918 0.9604 2.1399 33 1 3.7921 -0.5813 1.2503 34 1 5.2455 0.4468 1.2508 35 1 7.7388 1.6507 -0.1401 36 1 4.3311 5.0382 0.0874 37 1 4.9958 7.1089 -1.0672 38 1 6.9801 7.1230 -2.5252 39 1 8.3044 5.0685 -2.8220 40 1 7.6447 2.9998 -1.6606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222575396.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:55 Heat of formation + Delta-G solvation = -79.723804 kcal Electronic energy + Delta-G solvation = -22428.600435 eV Core-core repulsion = 19207.525010 eV Total energy + Delta-G solvation = -3221.075425 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31934 -40.13777 -38.60879 -35.79189 -35.30465 -33.54982 -31.86183 -31.61988 -28.56710 -28.19418 -27.69138 -25.23997 -23.81017 -23.27364 -21.97221 -20.90673 -19.03829 -18.73160 -17.71476 -17.35611 -16.51748 -16.38678 -16.12163 -15.70787 -15.52106 -15.31065 -15.13364 -14.60374 -14.43986 -14.13785 -13.92358 -13.61614 -13.48971 -13.36986 -13.15252 -13.12268 -12.87180 -12.61597 -12.56297 -12.16508 -11.98613 -11.89661 -11.54474 -11.41500 -10.63616 -10.54306 -10.23517 -10.15196 -9.71641 -9.37785 -8.58543 -6.32152 0.60248 0.63888 1.52104 1.53113 1.56897 1.77379 1.98660 2.52183 2.97759 3.18216 3.22928 3.72316 3.86961 4.01950 4.11076 4.20730 4.29412 4.39958 4.44189 4.53333 4.56970 4.60795 4.64224 4.77020 4.81525 4.87508 4.92039 4.95157 5.18445 5.24487 5.28923 5.37666 5.47032 5.66420 5.71639 5.85235 5.96057 6.02093 6.25816 6.42684 6.57066 6.71956 7.19646 7.41729 8.75328 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.007596 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.706295 B = 3685.231799 C = 5058.045835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.715 5.715 3 C 0.527 3.473 4 O -0.573 6.573 5 C 0.097 3.903 6 C -0.167 4.167 7 C -0.153 4.153 8 O -0.386 6.386 9 C 0.233 3.767 10 H 0.034 0.966 11 C -0.598 4.598 12 H 0.034 0.966 13 C -0.006 4.006 14 N -0.917 5.917 15 Si 1.099 2.901 16 H -0.278 1.278 17 H -0.285 1.285 18 H -0.268 1.268 19 C -0.068 4.068 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.137 4.137 23 C -0.123 4.123 24 C -0.136 4.136 25 H 0.050 0.950 26 H 0.121 0.879 27 H 0.047 0.953 28 H 0.418 0.582 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.143 0.857 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.580 -4.996 -4.375 10.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.369 5.369 3 C 0.313 3.687 4 O -0.452 6.452 5 C 0.054 3.946 6 C -0.224 4.224 7 C -0.211 4.211 8 O -0.306 6.306 9 C 0.177 3.823 10 H 0.052 0.948 11 C -0.636 4.636 12 H 0.052 0.948 13 C -0.208 4.208 14 N -0.554 5.554 15 Si 0.922 3.078 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.193 1.193 19 C -0.068 4.068 20 C -0.145 4.145 21 C -0.145 4.145 22 C -0.155 4.155 23 C -0.141 4.141 24 C -0.155 4.155 25 H 0.069 0.931 26 H 0.140 0.860 27 H 0.066 0.934 28 H 0.255 0.745 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.161 0.839 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.867 -4.460 -3.429 8.877 hybrid contribution -0.889 0.019 -0.683 1.121 sum -7.756 -4.441 -4.111 9.838 Atomic orbital electron populations 1.21735 0.77934 1.04695 1.01417 1.45609 1.08551 1.07707 1.75076 1.20444 0.89192 0.84189 0.74923 1.90641 1.70788 1.33425 1.50331 1.21341 0.90438 0.85339 0.97459 1.22367 1.02235 1.01828 0.95984 1.22279 1.03284 0.99813 0.95706 1.87880 1.23628 1.24142 1.94970 1.18761 0.77673 0.91400 0.94485 0.94834 1.22286 1.04405 1.43674 0.93252 0.94765 1.26808 0.93161 0.92569 1.08213 1.70938 1.37264 1.44742 1.02503 0.83150 0.76381 0.77142 0.71096 1.20332 1.21086 1.19348 1.20480 0.95353 0.97226 0.93780 1.20927 0.99619 0.93499 1.00470 1.21374 0.98059 0.97520 0.97552 1.21343 0.95534 0.98843 0.99791 1.21339 1.00340 0.92522 0.99889 1.20999 0.97105 0.99313 0.98052 0.93100 0.86035 0.93428 0.74490 0.92152 0.87566 0.92466 0.93933 0.89093 0.91356 0.92525 0.88582 0.84233 0.82930 0.83900 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 10.70 127.77 1.37 3.00 16 2 N -0.72 -17.35 5.50 -484.51 -2.66 -20.01 16 3 C 0.53 19.49 6.56 87.66 0.57 20.07 16 4 O -0.57 -26.78 16.50 16.01 0.26 -26.52 16 5 C 0.10 3.83 0.97 -11.54 -0.01 3.82 16 6 C -0.17 -5.44 8.26 71.99 0.59 -4.85 16 7 C -0.15 -5.75 7.51 71.98 0.54 -5.21 16 8 O -0.39 -19.36 8.48 -129.94 -1.10 -20.46 16 9 C 0.23 11.89 1.47 29.10 0.04 11.93 16 10 H 0.03 1.75 3.82 -2.38 -0.01 1.74 16 11 C -0.60 -32.97 6.29 25.60 0.16 -32.80 16 12 H 0.03 2.01 7.81 -2.91 -0.02 1.98 16 13 C -0.01 -0.35 5.24 84.66 0.44 0.10 16 14 N -0.92 -51.19 13.63 21.45 0.29 -50.90 16 15 Si 1.10 49.08 29.90 68.60 2.05 51.14 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 19 C -0.07 -3.34 4.96 -19.87 -0.10 -3.44 16 20 C -0.13 -5.92 9.36 22.27 0.21 -5.72 16 21 C -0.13 -4.79 10.05 22.27 0.22 -4.57 16 22 C -0.14 -4.62 10.05 22.27 0.22 -4.39 16 23 C -0.12 -4.52 10.05 22.27 0.22 -4.30 16 24 C -0.14 -6.11 9.45 22.27 0.21 -5.90 16 25 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.42 7.08 7.67 -92.71 -0.71 6.37 16 29 H 0.06 2.20 6.10 -2.39 -0.01 2.18 16 30 H 0.11 2.41 7.56 -2.39 -0.02 2.39 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.09 2.44 7.56 -2.39 -0.02 2.42 16 34 H 0.07 3.00 5.99 -2.39 -0.01 2.99 16 35 H 0.26 14.56 5.08 -92.71 -0.47 14.09 16 36 H 0.10 4.80 7.73 -2.91 -0.02 4.77 16 37 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 38 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 39 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.11 4.83 6.80 -2.91 -0.02 4.81 16 Total: -1.00 -74.15 327.23 4.18 -69.97 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.63 Total: 29.06 kcal Atomic # 6 Polarization: -36.98 SS G_CDS: 4.70 Total: -32.28 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -2.37 Total: -70.91 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.84 Total: -46.98 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 2.05 Total: 51.14 kcal Total: -74.15 4.18 -69.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222575396.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.753 kcal (2) G-P(sol) polarization free energy of solvation -74.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds