Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34776 * 120.00185 * 2 1 4 4 O 1.21276 * 119.99763 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99680 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47315 * 60.00366 * 5 3 2 7 7 C 1.52992 * 109.47117 * 299.99763 * 5 3 2 8 8 O 1.42904 * 109.46708 * 180.02562 * 5 3 2 9 9 C 1.42895 * 113.99972 * 180.02562 * 8 5 3 10 10 H 1.09007 * 109.46807 * 329.99810 * 9 8 5 11 11 C 1.50703 * 109.47439 * 89.99605 * 9 8 5 12 12 H 1.08001 * 119.99889 * 54.84574 * 11 9 8 13 13 C 1.37879 * 120.00247 * 234.85264 * 11 9 8 14 14 N 1.31517 * 119.99969 * 174.37581 * 13 11 9 15 15 Si 1.86794 * 119.99754 * 354.37578 * 13 11 9 16 16 H 1.48500 * 109.47363 * 85.34211 * 15 13 11 17 17 H 1.48503 * 109.47012 * 205.33603 * 15 13 11 18 18 H 1.48496 * 109.47432 * 325.33705 * 15 13 11 19 19 C 1.50694 * 109.47253 * 209.99683 * 9 8 5 20 20 C 1.38237 * 119.99937 * 322.21873 * 19 9 8 21 21 C 1.38237 * 119.99790 * 179.81226 * 20 19 9 22 22 C 1.38230 * 120.00018 * 0.39084 * 21 20 19 23 23 C 1.38233 * 120.00285 * 359.85930 * 22 21 20 24 24 C 1.38238 * 119.99918 * 142.48627 * 19 9 8 25 25 H 1.08999 * 109.47385 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46507 * 300.00027 * 1 2 3 27 27 H 1.09000 * 109.47260 * 59.99601 * 1 2 3 28 28 H 0.97003 * 119.99285 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47011 * 180.02562 * 6 5 3 30 30 H 1.09008 * 109.46569 * 299.99712 * 6 5 3 31 31 H 1.09000 * 109.47559 * 59.99178 * 6 5 3 32 32 H 1.08999 * 109.47180 * 300.00568 * 7 5 3 33 33 H 1.08999 * 109.47319 * 60.00178 * 7 5 3 34 34 H 1.09002 * 109.47520 * 180.02562 * 7 5 3 35 35 H 0.96998 * 119.99713 * 179.97438 * 14 13 11 36 36 H 1.07998 * 119.99828 * 359.97438 * 20 19 9 37 37 H 1.07999 * 119.99721 * 180.23048 * 21 20 19 38 38 H 1.08006 * 120.00017 * 179.83636 * 22 21 20 39 39 H 1.08001 * 120.00549 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.99935 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2174 -0.0005 5 6 3.6460 1.1670 -0.0006 6 6 4.1555 0.4461 -1.2502 7 6 4.1564 0.4456 1.2483 8 8 4.1224 2.5143 0.0001 9 6 5.5468 2.6271 -0.0009 10 1 5.9797 1.7681 0.5119 11 6 6.0466 2.6679 -1.4221 12 1 5.6590 3.4049 -2.1099 13 6 6.9985 1.7642 -1.8444 14 7 7.3539 1.7267 -3.1101 15 14 7.7832 0.5932 -0.6188 16 1 6.9259 -0.6094 -0.4644 17 1 9.1234 0.1856 -1.1119 18 1 7.9244 1.2724 0.6942 19 6 5.9511 3.8928 0.7101 20 6 5.1963 5.0412 0.5599 21 6 5.5649 6.2011 1.2153 22 6 6.6928 6.2150 2.0143 23 6 7.4505 5.0680 2.1603 24 6 7.0798 3.9070 1.5081 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.9499 -0.8401 -0.0004 29 1 5.2454 0.4456 -1.2504 30 1 3.7920 -0.5816 -1.2503 31 1 3.7918 0.9601 -2.1400 32 1 3.7934 0.9592 2.1385 33 1 3.7930 -0.5821 1.2482 34 1 5.2464 0.4458 1.2481 35 1 8.0238 1.0912 -3.4070 36 1 4.3172 5.0313 -0.0673 37 1 4.9731 7.0973 1.1009 38 1 6.9823 7.1220 2.5242 39 1 8.3320 5.0789 2.7843 40 1 7.6716 3.0109 1.6223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222575400.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = -72.289087 kcal Electronic energy + Delta-G solvation = -22522.457927 eV Core-core repulsion = 19301.704895 eV Total energy + Delta-G solvation = -3220.753032 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31412 -40.11662 -38.62319 -35.75951 -34.97310 -33.79446 -32.18860 -31.60411 -29.21250 -28.34161 -27.73557 -24.99821 -23.77626 -23.33953 -21.71891 -20.77355 -19.36681 -18.61262 -17.69405 -17.43189 -16.70531 -16.38791 -16.26797 -15.97485 -15.32993 -15.12948 -15.04935 -14.79319 -14.41678 -14.21647 -14.09358 -13.86231 -13.55715 -13.48097 -13.21329 -13.07396 -12.97495 -12.70784 -12.35799 -12.22255 -12.12236 -11.84207 -11.75758 -11.30647 -10.76092 -10.60427 -10.30852 -10.14562 -9.70478 -9.40639 -8.36742 -6.41446 0.59580 0.64038 1.23663 1.29581 1.38136 1.56151 2.00330 2.22718 2.85911 3.10316 3.22789 3.73463 3.85778 4.02525 4.09565 4.22928 4.27396 4.37124 4.43250 4.50131 4.58595 4.60133 4.63702 4.77129 4.81163 4.86440 4.93494 4.95175 5.14570 5.22822 5.29179 5.39770 5.40994 5.46813 5.67887 5.73091 5.88748 6.11091 6.25795 6.43632 6.57798 6.73516 7.21513 7.23947 8.80052 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.008062 C = 0.005941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.574563 B = 3472.223189 C = 4711.719895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.717 5.717 3 C 0.527 3.473 4 O -0.572 6.572 5 C 0.096 3.904 6 C -0.165 4.165 7 C -0.175 4.175 8 O -0.385 6.385 9 C 0.219 3.781 10 H 0.052 0.948 11 C -0.522 4.522 12 H 0.020 0.980 13 C 0.034 3.966 14 N -0.931 5.931 15 Si 0.906 3.094 16 H -0.232 1.232 17 H -0.283 1.283 18 H -0.237 1.237 19 C -0.070 4.070 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.118 4.118 24 C -0.145 4.145 25 H 0.121 0.879 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.418 0.582 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.063 0.937 35 H 0.271 0.729 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.187 -6.389 12.202 14.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.371 5.371 3 C 0.312 3.688 4 O -0.450 6.450 5 C 0.053 3.947 6 C -0.223 4.223 7 C -0.232 4.232 8 O -0.304 6.304 9 C 0.163 3.837 10 H 0.069 0.931 11 C -0.559 4.559 12 H 0.039 0.961 13 C -0.165 4.165 14 N -0.570 5.570 15 Si 0.728 3.272 16 H -0.156 1.156 17 H -0.209 1.209 18 H -0.161 1.161 19 C -0.071 4.071 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.152 4.152 23 C -0.136 4.136 24 C -0.163 4.163 25 H 0.139 0.861 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.255 0.745 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.156 0.844 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.673 -5.572 12.063 14.448 hybrid contribution 0.750 -0.678 -0.701 1.230 sum -4.923 -6.249 11.362 13.870 Atomic orbital electron populations 1.21729 0.77962 1.04663 1.01415 1.45616 1.08553 1.07741 1.75154 1.20441 0.89199 0.84189 0.74926 1.90640 1.70755 1.33391 1.50226 1.21353 0.90683 0.85505 0.97195 1.22492 1.03766 0.99877 0.96133 1.22479 1.02339 1.02239 0.96187 1.87970 1.23684 1.23985 1.94802 1.18965 0.78959 0.92405 0.93369 0.93063 1.21256 1.23116 1.16411 0.95143 0.96139 1.25805 0.96015 0.98103 0.96601 1.70045 1.32303 1.37809 1.16801 0.86514 0.79054 0.80862 0.80803 1.15595 1.20887 1.16115 1.20273 0.95699 0.96419 0.94705 1.20957 0.99648 0.93659 1.00158 1.21383 0.98133 0.97417 0.97463 1.21396 0.95060 0.99170 0.99556 1.21385 1.00429 0.92205 0.99554 1.21170 0.96829 0.99926 0.98351 0.86071 0.92878 0.93661 0.74510 0.90857 0.89189 0.94554 0.91276 0.87310 0.91861 0.92013 0.88790 0.84435 0.82822 0.83087 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.67 10.70 127.77 1.37 3.03 16 2 N -0.72 -17.64 5.50 -484.51 -2.66 -20.30 16 3 C 0.53 19.63 6.56 87.66 0.57 20.21 16 4 O -0.57 -26.85 16.50 16.02 0.26 -26.59 16 5 C 0.10 3.76 0.97 -11.54 -0.01 3.75 16 6 C -0.17 -6.55 7.50 71.98 0.54 -6.01 16 7 C -0.18 -5.31 8.26 71.98 0.59 -4.71 16 8 O -0.38 -19.02 8.45 -129.94 -1.10 -20.11 16 9 C 0.22 10.72 1.66 29.10 0.05 10.76 16 10 H 0.05 2.32 2.22 -2.38 -0.01 2.32 16 11 C -0.52 -30.02 7.67 25.60 0.20 -29.83 16 12 H 0.02 1.38 8.06 -2.91 -0.02 1.36 16 13 C 0.03 1.90 4.48 84.65 0.38 2.28 16 14 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 15 Si 0.91 39.16 24.64 68.60 1.69 40.85 16 16 H -0.23 -8.76 6.87 99.48 0.68 -8.08 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.24 -9.39 5.25 99.48 0.52 -8.87 16 19 C -0.07 -3.26 4.97 -19.87 -0.10 -3.36 16 20 C -0.13 -5.65 9.36 22.27 0.21 -5.44 16 21 C -0.13 -4.48 10.05 22.27 0.22 -4.26 16 22 C -0.13 -4.07 10.05 22.27 0.22 -3.84 16 23 C -0.12 -3.77 10.05 22.27 0.22 -3.54 16 24 C -0.14 -5.74 9.67 22.27 0.22 -5.52 16 25 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.42 7.18 7.67 -92.71 -0.71 6.47 16 29 H 0.07 3.23 2.73 -2.39 -0.01 3.22 16 30 H 0.09 2.59 7.56 -2.38 -0.02 2.57 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.11 2.24 7.56 -2.39 -0.02 2.23 16 34 H 0.06 2.02 5.64 -2.39 -0.01 2.01 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.09 4.63 7.71 -2.91 -0.02 4.61 16 37 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 38 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 39 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.12 4.49 6.49 -2.91 -0.02 4.47 16 Total: -1.00 -78.56 319.05 3.32 -75.24 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: 0.14 Total: 32.95 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 4.69 Total: -26.50 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -2.36 Total: -75.84 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -0.83 Total: -46.70 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.69 Total: 40.85 kcal Total: -78.56 3.32 -75.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222575400.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.956 kcal (2) G-P(sol) polarization free energy of solvation -78.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds