Wall clock time and date at job start Mon Mar 30 2020 02:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47297 * 2 1 4 4 C 1.52998 * 109.47297 * 179.97438 * 3 2 1 5 5 O 1.45199 * 109.47047 * 179.97438 * 4 3 2 6 6 C 1.34648 * 116.99991 * 179.97438 * 5 4 3 7 7 O 1.21513 * 119.99943 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00156 * 180.02562 * 6 5 4 9 9 C 1.39951 * 120.00186 * 185.31574 * 8 6 5 10 10 C 1.38867 * 120.06876 * 33.26220 * 9 8 6 11 11 C 1.38112 * 119.92932 * 180.02562 * 10 9 8 12 12 C 1.38287 * 120.07139 * 0.02906 * 11 10 9 13 13 C 1.50690 * 119.92818 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47573 * 89.99984 * 13 12 11 15 15 H 1.08003 * 119.99725 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00591 * 180.27131 * 14 13 12 17 17 N 1.31515 * 119.99888 * 359.72430 * 16 14 13 18 18 Si 1.86797 * 120.00174 * 179.72230 * 16 14 13 19 19 H 1.48506 * 109.46988 * 90.00169 * 18 16 14 20 20 H 1.48503 * 109.47220 * 210.00148 * 18 16 14 21 21 H 1.48498 * 109.47521 * 330.00161 * 18 16 14 22 22 C 1.38281 * 120.13523 * 0.24644 * 12 11 10 23 23 C 1.38115 * 120.07170 * 359.45591 * 22 12 11 24 24 H 1.09010 * 109.46961 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47233 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47319 * 300.00398 * 1 2 3 27 27 H 1.09000 * 109.47594 * 239.99961 * 2 1 3 28 28 H 1.08996 * 109.47183 * 119.99717 * 2 1 3 29 29 H 1.09000 * 109.46831 * 59.99493 * 3 2 1 30 30 H 1.09005 * 109.46613 * 300.00168 * 3 2 1 31 31 H 1.08994 * 109.47319 * 59.99602 * 4 3 2 32 32 H 1.09001 * 109.46718 * 299.99726 * 4 3 2 33 33 H 0.96998 * 120.00155 * 5.31995 * 8 6 5 34 34 H 1.07996 * 120.03190 * 0.02562 * 10 9 8 35 35 H 1.07995 * 119.96424 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.47350 * 329.99589 * 13 12 11 37 37 H 1.09003 * 109.46878 * 209.99953 * 13 12 11 38 38 H 0.96997 * 120.00360 * 180.02562 * 17 16 14 39 39 H 1.08003 * 119.95859 * 179.70376 * 22 12 11 40 40 H 1.07998 * 120.03524 * 180.27174 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8115 0.0000 6 6 5.3889 2.9879 0.0010 7 8 6.1291 2.0243 0.0028 8 7 5.9040 4.2333 0.0011 9 6 7.2867 4.4187 -0.1102 10 6 8.0480 3.5386 -0.8680 11 6 9.4124 3.7239 -0.9754 12 6 10.0207 4.7842 -0.3288 13 6 11.5097 4.9830 -0.4477 14 6 11.8058 5.8636 -1.6342 15 1 10.9966 6.2412 -2.2418 16 6 13.1100 6.1823 -1.9479 17 7 14.0954 5.7222 -1.2084 18 14 13.4774 7.2676 -3.4232 19 1 13.4933 8.6907 -2.9991 20 1 14.8022 6.9043 -3.9873 21 1 12.4288 7.0706 -4.4561 22 6 9.2662 5.6590 0.4312 23 6 7.9005 5.4827 0.5375 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8890 32 1 3.9329 0.9289 0.8909 33 1 5.3165 5.0013 0.0782 34 1 7.5735 2.7101 -1.3728 35 1 10.0049 3.0400 -1.5650 36 1 11.9957 4.0167 -0.5821 37 1 11.8866 5.4562 0.4590 38 1 15.0130 5.9467 -1.4288 39 1 9.7449 6.4833 0.9389 40 1 7.3112 6.1688 1.1277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250056117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:14 Heat of formation + Delta-G solvation = -79.069940 kcal Electronic energy + Delta-G solvation = -20144.630395 eV Core-core repulsion = 16923.583323 eV Total energy + Delta-G solvation = -3221.047072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.79717 -38.85288 -37.00237 -35.31304 -34.96622 -33.02676 -30.65805 -30.33354 -29.71404 -26.71874 -24.39483 -23.22021 -22.43482 -21.59185 -21.43948 -20.16166 -18.81135 -17.33200 -16.97444 -16.34331 -16.17784 -15.62034 -14.96302 -14.58994 -14.29288 -14.22717 -13.78508 -13.66408 -13.12447 -12.87679 -12.68779 -12.51507 -12.30041 -12.00457 -11.67068 -11.50161 -11.43367 -11.28691 -11.17530 -10.88324 -10.69430 -10.67983 -10.48078 -10.33071 -9.98908 -9.49804 -9.30268 -8.41949 -8.32466 -7.43763 -6.03181 -4.07287 1.78475 2.01765 2.09355 2.85901 3.30895 3.37242 3.41485 3.97436 4.37209 4.45952 4.51791 4.54609 4.67549 4.86376 5.05141 5.09013 5.30581 5.33858 5.35971 5.39038 5.44314 5.52421 5.63342 5.76810 5.80996 5.87437 6.00389 6.06031 6.16242 6.22694 6.61916 6.74357 6.84396 7.13985 7.18379 7.41557 7.51197 7.68078 7.85601 7.92532 8.27488 8.32739 8.98019 9.56448 11.06419 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046429 B = 0.002555 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.921383 B =10958.101155 C =11033.107914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.086 3.914 5 O -0.372 6.372 6 C 0.645 3.355 7 O -0.554 6.554 8 N -0.645 5.645 9 C 0.116 3.884 10 C -0.117 4.117 11 C -0.106 4.106 12 C -0.040 4.040 13 C 0.047 3.953 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.107 4.107 23 C -0.139 4.139 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.030 0.970 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.125 0.875 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.350 -6.789 3.425 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.158 4.158 4 C 0.011 3.989 5 O -0.287 6.287 6 C 0.398 3.602 7 O -0.442 6.442 8 N -0.296 5.296 9 C 0.024 3.976 10 C -0.137 4.137 11 C -0.125 4.125 12 C -0.041 4.041 13 C 0.010 3.990 14 C -0.549 4.549 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.125 4.125 23 C -0.159 4.159 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.248 0.752 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.143 0.857 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -23.908 -7.356 3.426 25.248 hybrid contribution 0.017 0.898 -0.765 1.179 sum -23.891 -6.459 2.661 24.891 Atomic orbital electron populations 1.21748 0.95101 1.01929 1.02086 1.21433 0.96403 0.95423 1.02736 1.21636 0.92351 0.97991 1.03824 1.23036 0.94242 0.78567 1.03036 1.86197 1.22050 1.33326 1.87090 1.18072 0.81082 0.84394 0.76637 1.91032 1.59399 1.39514 1.54210 1.41904 1.06711 1.05745 1.75222 1.17296 0.80073 0.99165 1.01022 1.21013 0.94294 0.99597 0.98749 1.20995 0.93282 0.98417 0.99797 1.20748 0.99304 0.91863 0.92165 1.18364 0.84824 0.97942 0.97845 1.21063 0.92089 1.30186 1.11601 0.92428 1.25018 0.96296 0.96241 0.96841 1.69957 0.99333 1.45042 1.38946 0.86534 0.77657 0.80686 0.82811 1.20609 1.21188 1.19819 1.20892 0.92137 0.99662 0.99848 1.20705 0.95236 0.98859 1.01096 0.92527 0.92414 0.92537 0.91467 0.91489 0.90732 0.90698 0.91016 0.91030 0.75242 0.85755 0.85903 0.95208 0.95225 0.92848 0.85741 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.69 5.93 -26.73 -0.16 -0.85 16 3 C -0.12 -0.82 5.59 -26.73 -0.15 -0.97 16 4 C 0.09 0.82 5.47 37.16 0.20 1.03 16 5 O -0.37 -4.46 10.27 -40.35 -0.41 -4.88 16 6 C 0.64 9.51 8.49 54.05 0.46 9.97 16 7 O -0.55 -9.90 13.82 -19.28 -0.27 -10.17 16 8 N -0.64 -8.83 5.35 -14.27 -0.08 -8.91 16 9 C 0.12 1.94 6.28 -83.69 -0.53 1.41 16 10 C -0.12 -2.18 8.65 -39.39 -0.34 -2.52 16 11 C -0.11 -2.17 9.69 -39.61 -0.38 -2.55 16 12 C -0.04 -0.88 5.07 -104.59 -0.53 -1.41 16 13 C 0.05 1.21 5.10 -29.04 -0.15 1.06 16 14 C -0.51 -14.26 9.09 -34.44 -0.31 -14.57 16 15 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 18 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.11 -2.04 9.69 -39.61 -0.38 -2.42 16 23 C -0.14 -2.26 9.96 -39.40 -0.39 -2.65 16 24 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.41 4.22 8.92 -40.82 -0.36 3.86 16 34 H 0.12 2.30 6.41 -52.49 -0.34 1.96 16 35 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 36 H 0.03 0.80 8.08 -51.93 -0.42 0.39 16 37 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 2.26 8.06 -52.48 -0.42 1.83 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 342.99 15.07 5.17 5.17 Total: -1.00 -31.78 342.99 -8.42 -40.20 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.15 Total: 1.06 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.39 Total: -13.31 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.66 Total: -34.55 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.68 Total: -15.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.78 -8.42 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.868 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds