Wall clock time and date at job start Mon Mar 30 2020 02:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47297 * 2 1 4 4 C 1.52998 * 109.47297 * 179.97438 * 3 2 1 5 5 O 1.45199 * 109.47047 * 179.97438 * 4 3 2 6 6 C 1.34648 * 116.99991 * 179.97438 * 5 4 3 7 7 O 1.21513 * 119.99943 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00156 * 180.02562 * 6 5 4 9 9 C 1.39951 * 120.00186 * 185.31574 * 8 6 5 10 10 C 1.38867 * 120.06876 * 33.26220 * 9 8 6 11 11 C 1.38112 * 119.92932 * 180.02562 * 10 9 8 12 12 C 1.38287 * 120.07139 * 0.02906 * 11 10 9 13 13 C 1.50690 * 119.92818 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47573 * 89.99984 * 13 12 11 15 15 H 1.08003 * 119.99725 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00591 * 180.27131 * 14 13 12 17 17 N 1.31515 * 119.99888 * 359.72430 * 16 14 13 18 18 Si 1.86797 * 120.00174 * 179.72230 * 16 14 13 19 19 H 1.48506 * 109.46988 * 90.00169 * 18 16 14 20 20 H 1.48503 * 109.47220 * 210.00148 * 18 16 14 21 21 H 1.48498 * 109.47521 * 330.00161 * 18 16 14 22 22 C 1.38281 * 120.13523 * 0.24644 * 12 11 10 23 23 C 1.38115 * 120.07170 * 359.45591 * 22 12 11 24 24 H 1.09010 * 109.46961 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47233 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47319 * 300.00398 * 1 2 3 27 27 H 1.09000 * 109.47594 * 239.99961 * 2 1 3 28 28 H 1.08996 * 109.47183 * 119.99717 * 2 1 3 29 29 H 1.09000 * 109.46831 * 59.99493 * 3 2 1 30 30 H 1.09005 * 109.46613 * 300.00168 * 3 2 1 31 31 H 1.08994 * 109.47319 * 59.99602 * 4 3 2 32 32 H 1.09001 * 109.46718 * 299.99726 * 4 3 2 33 33 H 0.96998 * 120.00155 * 5.31995 * 8 6 5 34 34 H 1.07996 * 120.03190 * 0.02562 * 10 9 8 35 35 H 1.07995 * 119.96424 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.47350 * 329.99589 * 13 12 11 37 37 H 1.09003 * 109.46878 * 209.99953 * 13 12 11 38 38 H 0.96997 * 120.00360 * 180.02562 * 17 16 14 39 39 H 1.08003 * 119.95859 * 179.70376 * 22 12 11 40 40 H 1.07998 * 120.03524 * 180.27174 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8115 0.0000 6 6 5.3889 2.9879 0.0010 7 8 6.1291 2.0243 0.0028 8 7 5.9040 4.2333 0.0011 9 6 7.2867 4.4187 -0.1102 10 6 8.0480 3.5386 -0.8680 11 6 9.4124 3.7239 -0.9754 12 6 10.0207 4.7842 -0.3288 13 6 11.5097 4.9830 -0.4477 14 6 11.8058 5.8636 -1.6342 15 1 10.9966 6.2412 -2.2418 16 6 13.1100 6.1823 -1.9479 17 7 14.0954 5.7222 -1.2084 18 14 13.4774 7.2676 -3.4232 19 1 13.4933 8.6907 -2.9991 20 1 14.8022 6.9043 -3.9873 21 1 12.4288 7.0706 -4.4561 22 6 9.2662 5.6590 0.4312 23 6 7.9005 5.4827 0.5375 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8890 32 1 3.9329 0.9289 0.8909 33 1 5.3165 5.0013 0.0782 34 1 7.5735 2.7101 -1.3728 35 1 10.0049 3.0400 -1.5650 36 1 11.9957 4.0167 -0.5821 37 1 11.8866 5.4562 0.4590 38 1 15.0130 5.9467 -1.4288 39 1 9.7449 6.4833 0.9389 40 1 7.3112 6.1688 1.1277 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250056117.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:13 Heat of formation + Delta-G solvation = -97.340923 kcal Electronic energy + Delta-G solvation = -20145.422684 eV Core-core repulsion = 16923.583323 eV Total energy + Delta-G solvation = -3221.839361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97439 -40.19905 -38.10827 -36.37244 -35.94162 -34.99915 -32.30087 -31.81401 -30.46374 -28.46935 -25.61556 -24.56489 -23.87966 -22.77815 -22.11496 -21.61940 -19.94864 -18.60247 -18.47312 -17.93934 -17.35549 -16.76443 -16.38085 -15.96905 -15.76492 -15.13510 -14.71120 -14.63577 -14.49438 -14.38905 -14.29341 -13.73173 -13.32355 -13.22148 -13.11703 -12.86242 -12.61267 -12.49252 -12.28843 -12.08152 -11.99772 -11.83109 -11.76963 -11.61564 -11.45292 -11.38818 -11.05516 -10.58730 -9.79827 -8.95420 -8.17378 -6.31440 0.36576 0.54363 0.97866 1.41194 1.42408 1.53706 1.64162 2.41252 2.96554 3.02185 3.12474 3.88191 3.88474 4.00242 4.10982 4.15287 4.30661 4.31858 4.37176 4.55899 4.57787 4.60540 4.64669 4.85010 4.88980 4.93435 5.09805 5.16161 5.27005 5.30780 5.32308 5.35968 5.39615 5.42371 5.45460 5.58456 5.76687 6.06514 6.09098 6.22964 6.27257 6.81334 7.15688 7.36944 8.90988 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.046429 B = 0.002555 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.921383 B =10958.101155 C =11033.107914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.111 4.111 4 C 0.079 3.921 5 O -0.362 6.362 6 C 0.646 3.354 7 O -0.588 6.588 8 N -0.631 5.631 9 C 0.129 3.871 10 C -0.122 4.122 11 C -0.118 4.118 12 C -0.071 4.071 13 C 0.056 3.944 14 C -0.527 4.527 15 H 0.056 0.944 16 C 0.002 3.998 17 N -0.930 5.930 18 Si 0.966 3.034 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.267 1.267 22 C -0.110 4.110 23 C -0.120 4.120 24 H 0.058 0.942 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.432 0.568 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.000 1.000 37 H 0.009 0.991 38 H 0.265 0.735 39 H 0.131 0.869 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.076 -5.667 3.280 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.149 4.149 4 C 0.004 3.996 5 O -0.276 6.276 6 C 0.400 3.600 7 O -0.478 6.478 8 N -0.285 5.285 9 C 0.037 3.963 10 C -0.143 4.143 11 C -0.136 4.136 12 C -0.072 4.072 13 C 0.019 3.981 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.791 3.209 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.129 4.129 23 C -0.140 4.140 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.272 0.728 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.019 0.981 37 H 0.027 0.973 38 H 0.074 0.926 39 H 0.149 0.851 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.691 -6.218 3.286 27.602 hybrid contribution 0.735 0.466 -0.666 1.096 sum -25.956 -5.752 2.620 26.715 Atomic orbital electron populations 1.21744 0.94311 1.02387 1.02345 1.21445 0.97017 0.94586 1.02879 1.21626 0.90020 0.98918 1.04321 1.23334 0.95987 0.77400 1.02830 1.86229 1.20125 1.34743 1.86489 1.18196 0.81743 0.84100 0.75941 1.91023 1.60451 1.40718 1.55639 1.41721 1.05726 1.06417 1.74590 1.17347 0.81383 0.98245 0.99373 1.21012 0.93578 1.00242 0.99423 1.20912 0.94257 0.98238 1.00220 1.20452 0.97269 0.94187 0.95282 1.18108 0.87821 0.95807 0.96376 1.21386 0.92354 1.30448 1.12258 0.92529 1.25942 0.96086 0.97657 0.99867 1.70084 0.99785 1.46390 1.40787 0.85428 0.77540 0.78936 0.79035 1.19468 1.20707 1.19105 1.21000 0.93446 0.99180 0.99252 1.20999 0.94132 0.98814 1.00080 0.92326 0.91908 0.92232 0.91442 0.91343 0.90127 0.90272 0.91370 0.91240 0.72837 0.85781 0.86874 0.98121 0.97276 0.92617 0.85065 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.45 16 2 C -0.12 -1.15 5.93 30.60 0.18 -0.97 16 3 C -0.11 -1.29 5.59 30.60 0.17 -1.12 16 4 C 0.08 1.39 5.47 71.98 0.39 1.78 16 5 O -0.36 -7.86 10.27 -55.58 -0.57 -8.43 16 6 C 0.65 17.73 8.49 129.79 1.10 18.83 16 7 O -0.59 -20.46 13.82 19.80 0.27 -20.18 16 8 N -0.63 -15.38 5.35 -429.46 -2.30 -17.68 16 9 C 0.13 4.03 6.28 38.14 0.24 4.27 16 10 C -0.12 -4.52 8.65 22.39 0.19 -4.32 16 11 C -0.12 -4.93 9.69 22.25 0.22 -4.72 16 12 C -0.07 -3.19 5.07 -19.85 -0.10 -3.29 16 13 C 0.06 3.02 5.10 29.10 0.15 3.16 16 14 C -0.53 -30.13 9.09 25.60 0.23 -29.90 16 15 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 16 C 0.00 0.14 5.46 84.65 0.46 0.60 16 17 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 18 Si 0.97 44.38 29.54 68.60 2.03 46.40 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 C -0.11 -4.10 9.69 22.25 0.22 -3.89 16 23 C -0.12 -3.55 9.96 22.39 0.22 -3.32 16 24 H 0.06 0.43 8.14 -2.38 -0.02 0.42 16 25 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.43 7.10 8.92 -92.71 -0.83 6.27 16 34 H 0.12 4.57 6.41 -2.91 -0.02 4.56 16 35 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 36 H 0.00 0.03 8.08 -2.39 -0.02 0.01 16 37 H 0.01 0.51 8.08 -2.39 -0.02 0.49 16 38 H 0.26 15.05 8.31 -92.71 -0.77 14.27 16 39 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 40 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -69.73 342.99 4.31 -65.42 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.20 Total: 13.87 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 4.39 Total: -23.33 kcal Atomic # 7 Polarization: -71.73 SS G_CDS: -2.01 Total: -73.74 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.30 Total: -28.62 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.73 4.31 -65.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250056117.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.917 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds