Wall clock time and date at job start Mon Mar 30 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46782 * 2 1 4 4 C 1.52992 * 109.47891 * 239.99533 * 2 1 3 5 5 O 1.45209 * 109.46839 * 119.99572 * 2 1 3 6 6 C 1.34676 * 116.99858 * 60.00265 * 5 2 1 7 7 O 1.21423 * 119.99911 * 0.02562 * 6 5 2 8 8 C 1.48066 * 119.99622 * 180.02562 * 6 5 2 9 9 N 1.32778 * 119.73085 * 354.76043 * 8 6 5 10 10 C 1.31475 * 121.64326 * 179.97438 * 9 8 6 11 11 C 1.38629 * 120.90593 * 0.02562 * 10 9 8 12 12 C 1.38580 * 119.35678 * 359.97438 * 11 10 9 13 13 C 1.38640 * 118.48898 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.46939 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47232 * 101.93919 * 14 13 12 16 16 C 1.50699 * 109.47232 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99960 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99914 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00029 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00130 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47393 * 89.99356 * 20 18 16 22 22 H 1.48505 * 109.47344 * 209.99876 * 20 18 16 23 23 H 1.48504 * 109.47160 * 330.00001 * 20 18 16 24 24 H 1.08999 * 109.47460 * 300.00468 * 1 2 3 25 25 H 1.09007 * 109.46598 * 60.00857 * 1 2 3 26 26 H 1.09002 * 109.46781 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46803 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47395 * 299.98908 * 3 2 1 29 29 H 1.08999 * 109.47505 * 59.99559 * 3 2 1 30 30 H 1.09002 * 109.46909 * 300.00449 * 4 2 1 31 31 H 1.09007 * 109.46846 * 59.99807 * 4 2 1 32 32 H 1.08999 * 109.47801 * 180.02562 * 4 2 1 33 33 H 1.08006 * 119.54490 * 179.72229 * 10 9 8 34 34 H 1.07998 * 120.31784 * 179.97438 * 11 10 9 35 35 H 1.07992 * 120.75447 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47116 * 221.94330 * 14 13 12 37 37 H 1.09000 * 109.47099 * 341.94148 * 14 13 12 38 38 H 1.09007 * 109.47043 * 300.00239 * 15 14 13 39 39 H 1.09000 * 109.46892 * 60.00102 * 15 14 13 40 40 H 0.96998 * 120.00224 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0402 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6521 -1.9726 1.3385 7 8 0.9520 -2.5097 0.5043 8 6 2.1079 -2.7340 2.5238 9 7 2.9569 -2.1756 3.3785 10 6 3.3857 -2.8170 4.4431 11 6 2.9639 -4.1095 4.7137 12 6 2.0778 -4.7303 3.8477 13 6 1.6424 -4.0302 2.7331 14 6 0.6784 -4.6620 1.7623 15 6 -0.7289 -4.1166 2.0130 16 6 -1.6930 -4.7489 1.0426 17 1 -1.3376 -5.4682 0.3196 18 6 -3.0290 -4.4099 1.0785 19 7 -3.8704 -4.9620 0.2320 20 14 -3.6438 -3.1662 2.3294 21 1 -3.5683 -1.8015 1.7489 22 1 -5.0520 -3.4760 2.6845 23 1 -2.7996 -3.2325 3.5493 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2490 31 1 1.6768 -0.2075 -2.1391 32 1 3.1301 -0.7217 -1.2488 33 1 4.0797 -2.3318 5.1136 34 1 3.3225 -4.6277 5.5908 35 1 1.7342 -5.7365 4.0368 36 1 0.9830 -4.4266 0.7425 37 1 0.6791 -5.7431 1.9012 38 1 -1.0335 -4.3520 3.0328 39 1 -0.7296 -3.0355 1.8740 40 1 -4.8102 -4.7233 0.2570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:39 Heat of formation + Delta-G solvation = -54.932033 kcal Electronic energy + Delta-G solvation = -22300.421910 eV Core-core repulsion = 19080.421537 eV Total energy + Delta-G solvation = -3220.000373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.88067 -39.62465 -36.80224 -34.50951 -33.75233 -32.50267 -31.89962 -29.74929 -27.30453 -27.18326 -25.92130 -24.74449 -22.59471 -21.79507 -20.24942 -19.55286 -17.70184 -16.81031 -16.63790 -16.04536 -15.73326 -15.39955 -14.65157 -14.36460 -14.08046 -13.63431 -13.57233 -13.40961 -13.05979 -13.00772 -12.58194 -12.34562 -12.04935 -12.00343 -11.73080 -11.70870 -11.50593 -11.25823 -11.10383 -10.88767 -10.35968 -10.22196 -9.94933 -9.91332 -9.63847 -9.51211 -9.17506 -9.08840 -8.70322 -8.46918 -5.98444 -3.94164 0.71733 1.35554 2.74216 2.81983 3.33294 3.40017 3.44078 3.95774 4.29369 4.49788 4.83952 4.86350 4.89831 4.93062 5.03036 5.05626 5.08541 5.36003 5.39798 5.56381 5.66872 5.73507 5.79324 5.82775 5.90200 6.02550 6.06437 6.10282 6.14190 6.42365 6.47488 6.51988 6.59172 6.62629 6.74192 6.96693 7.36779 7.49060 7.79278 7.84936 8.24910 8.60261 9.07005 9.64559 11.15286 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.008156 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.844928 B = 3432.032700 C = 5001.642186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.116 3.884 3 C -0.137 4.137 4 C -0.182 4.182 5 O -0.335 6.335 6 C 0.512 3.488 7 O -0.453 6.453 8 C 0.080 3.920 9 N -0.437 5.437 10 C 0.074 3.926 11 C -0.141 4.141 12 C -0.090 4.090 13 C -0.046 4.046 14 C -0.080 4.080 15 C 0.005 3.995 16 C -0.505 4.505 17 H 0.073 0.927 18 C 0.068 3.932 19 N -0.905 5.905 20 Si 0.873 3.127 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.268 1.268 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.159 0.841 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.008 0.992 39 H 0.016 0.984 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.126 7.914 5.076 17.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.080 3.920 3 C -0.194 4.194 4 C -0.240 4.240 5 O -0.252 6.252 6 C 0.354 3.646 7 O -0.337 6.337 8 C -0.055 4.055 9 N -0.147 5.147 10 C -0.087 4.087 11 C -0.161 4.161 12 C -0.116 4.116 13 C -0.048 4.048 14 C -0.118 4.118 15 C -0.032 4.032 16 C -0.543 4.543 17 H 0.091 0.909 18 C -0.133 4.133 19 N -0.544 5.544 20 Si 0.700 3.300 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.193 1.193 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.026 0.974 39 H 0.034 0.966 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.971 8.646 4.520 17.869 hybrid contribution -0.804 -0.133 0.865 1.189 sum 14.166 8.513 5.385 17.383 Atomic orbital electron populations 1.22541 0.93721 1.05844 1.02381 1.22175 0.94634 0.92057 0.83179 1.21810 1.01903 0.92885 1.02784 1.22488 1.01208 1.03668 0.96593 1.86670 1.69470 1.24515 1.44577 1.20673 0.78003 0.80770 0.85128 1.90903 1.32448 1.68862 1.41536 1.19966 0.98682 0.92078 0.94790 1.67580 1.08424 1.36405 1.02323 1.22708 0.99243 0.92229 0.94535 1.22408 0.97293 0.96418 0.99994 1.21623 0.96031 1.00877 0.93084 1.21455 0.94491 0.92739 0.96144 1.20997 0.94273 0.98645 0.97839 1.19451 0.90641 0.96548 0.96589 1.21020 0.91587 1.24785 1.16900 0.90898 1.24944 0.96889 0.95942 0.95486 1.69903 1.03541 1.43905 1.37095 0.86890 0.77935 0.82388 0.82761 1.20281 1.21388 1.19273 0.92251 0.91193 0.88761 0.91691 0.90557 0.91635 0.89376 0.91181 0.92324 0.82348 0.84392 0.83794 0.88168 0.91712 0.97394 0.96606 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.01 8.37 37.16 0.31 -2.70 16 2 C 0.12 1.71 1.13 -90.62 -0.10 1.61 16 3 C -0.14 -1.54 8.85 37.16 0.33 -1.21 16 4 C -0.18 -2.54 8.37 37.15 0.31 -2.23 16 5 O -0.34 -5.83 9.71 -40.43 -0.39 -6.22 16 6 C 0.51 9.77 6.82 34.76 0.24 10.01 16 7 O -0.45 -9.46 7.31 -19.21 -0.14 -9.60 16 8 C 0.08 1.46 6.74 -83.03 -0.56 0.90 16 9 N -0.44 -7.13 10.12 -9.81 -0.10 -7.23 16 10 C 0.07 0.93 11.18 -17.56 -0.20 0.73 16 11 C -0.14 -1.62 10.12 -39.31 -0.40 -2.01 16 12 C -0.09 -1.27 9.81 -39.31 -0.39 -1.65 16 13 C -0.05 -0.81 5.19 -104.08 -0.54 -1.36 16 14 C -0.08 -1.65 4.57 -27.88 -0.13 -1.78 16 15 C 0.00 0.12 3.54 -27.88 -0.10 0.02 16 16 C -0.50 -14.68 9.66 -34.44 -0.33 -15.01 16 17 H 0.07 2.26 7.99 -52.48 -0.42 1.85 16 18 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 20 Si 0.87 22.54 27.47 -169.99 -4.67 17.87 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.27 -6.72 6.54 56.52 0.37 -6.35 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 26 H 0.09 1.86 5.88 -51.93 -0.31 1.55 16 27 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.14 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.10 2.17 5.92 -51.93 -0.31 1.87 16 37 H 0.06 1.25 8.02 -51.93 -0.42 0.83 16 38 H 0.01 0.20 7.20 -51.92 -0.37 -0.18 16 39 H 0.02 0.40 5.86 -51.93 -0.30 0.10 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 325.40 15.07 4.90 4.90 Total: -1.00 -33.42 325.40 -7.10 -40.52 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.83 Total: 0.13 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -1.65 Total: -12.75 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.67 Total: -34.84 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.53 Total: -15.83 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.42 -7.10 -40.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.413 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds