Wall clock time and date at job start Mon Mar 30 2020 02:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46782 * 2 1 4 4 C 1.52992 * 109.47891 * 239.99533 * 2 1 3 5 5 O 1.45209 * 109.46839 * 119.99572 * 2 1 3 6 6 C 1.34676 * 116.99858 * 60.00265 * 5 2 1 7 7 O 1.21423 * 119.99911 * 0.02562 * 6 5 2 8 8 C 1.48066 * 119.99622 * 180.02562 * 6 5 2 9 9 N 1.32778 * 119.73085 * 354.76043 * 8 6 5 10 10 C 1.31475 * 121.64326 * 179.97438 * 9 8 6 11 11 C 1.38629 * 120.90593 * 0.02562 * 10 9 8 12 12 C 1.38580 * 119.35678 * 359.97438 * 11 10 9 13 13 C 1.38640 * 118.48898 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.46939 * 180.02562 * 13 12 11 15 15 C 1.52997 * 109.47232 * 101.93919 * 14 13 12 16 16 C 1.50699 * 109.47232 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99960 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99914 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00029 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00130 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47393 * 89.99356 * 20 18 16 22 22 H 1.48505 * 109.47344 * 209.99876 * 20 18 16 23 23 H 1.48504 * 109.47160 * 330.00001 * 20 18 16 24 24 H 1.08999 * 109.47460 * 300.00468 * 1 2 3 25 25 H 1.09007 * 109.46598 * 60.00857 * 1 2 3 26 26 H 1.09002 * 109.46781 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46803 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47395 * 299.98908 * 3 2 1 29 29 H 1.08999 * 109.47505 * 59.99559 * 3 2 1 30 30 H 1.09002 * 109.46909 * 300.00449 * 4 2 1 31 31 H 1.09007 * 109.46846 * 59.99807 * 4 2 1 32 32 H 1.08999 * 109.47801 * 180.02562 * 4 2 1 33 33 H 1.08006 * 119.54490 * 179.72229 * 10 9 8 34 34 H 1.07998 * 120.31784 * 179.97438 * 11 10 9 35 35 H 1.07992 * 120.75447 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47116 * 221.94330 * 14 13 12 37 37 H 1.09000 * 109.47099 * 341.94148 * 14 13 12 38 38 H 1.09007 * 109.47043 * 300.00239 * 15 14 13 39 39 H 1.09000 * 109.46892 * 60.00102 * 15 14 13 40 40 H 0.96998 * 120.00224 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0402 -0.7213 -1.2491 5 8 2.0139 -0.6844 1.1857 6 6 1.6521 -1.9726 1.3385 7 8 0.9520 -2.5097 0.5043 8 6 2.1079 -2.7340 2.5238 9 7 2.9569 -2.1756 3.3785 10 6 3.3857 -2.8170 4.4431 11 6 2.9639 -4.1095 4.7137 12 6 2.0778 -4.7303 3.8477 13 6 1.6424 -4.0302 2.7331 14 6 0.6784 -4.6620 1.7623 15 6 -0.7289 -4.1166 2.0130 16 6 -1.6930 -4.7489 1.0426 17 1 -1.3376 -5.4682 0.3196 18 6 -3.0290 -4.4099 1.0785 19 7 -3.8704 -4.9620 0.2320 20 14 -3.6438 -3.1662 2.3294 21 1 -3.5683 -1.8015 1.7489 22 1 -5.0520 -3.4760 2.6845 23 1 -2.7996 -3.2325 3.5493 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.6768 -1.7490 -1.2490 31 1 1.6768 -0.2075 -2.1391 32 1 3.1301 -0.7217 -1.2488 33 1 4.0797 -2.3318 5.1136 34 1 3.3225 -4.6277 5.5908 35 1 1.7342 -5.7365 4.0368 36 1 0.9830 -4.4266 0.7425 37 1 0.6791 -5.7431 1.9012 38 1 -1.0335 -4.3520 3.0328 39 1 -0.7296 -3.0355 1.8740 40 1 -4.8102 -4.7233 0.2570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059256.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:39 Heat of formation + Delta-G solvation = -75.704374 kcal Electronic energy + Delta-G solvation = -22301.322666 eV Core-core repulsion = 19080.421537 eV Total energy + Delta-G solvation = -3220.901130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.16749 -40.81332 -38.14106 -36.15845 -35.05161 -34.36954 -33.14027 -31.44407 -28.41001 -28.30095 -27.61559 -26.05094 -24.02588 -23.17465 -21.94157 -20.78885 -19.07136 -18.90268 -17.83302 -17.25643 -17.10520 -16.51331 -16.36015 -15.86862 -15.44003 -15.12670 -14.84046 -14.70954 -14.57690 -14.57401 -14.08497 -13.55036 -13.34024 -13.18966 -13.13613 -13.05877 -12.85636 -12.84129 -12.52264 -12.30642 -12.05676 -11.93575 -11.72981 -11.46515 -11.34296 -10.86808 -10.77770 -10.75995 -10.44187 -10.00175 -8.30972 -6.31722 -0.46111 0.24821 1.26751 1.27544 1.39074 1.46222 1.59795 2.30809 2.79848 3.04230 3.16927 3.69134 3.74403 3.77684 3.81622 3.92277 3.95261 4.03522 4.41288 4.50231 4.55416 4.57610 4.64743 4.71482 4.72491 4.79449 4.84161 4.87131 5.01190 5.08993 5.09609 5.17420 5.24740 5.30053 5.32723 5.53128 5.56773 5.66074 5.74072 6.28244 6.63183 6.73222 6.95606 7.30399 8.86247 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011994 B = 0.008156 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.844928 B = 3432.032700 C = 5001.642186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.105 3.895 3 C -0.129 4.129 4 C -0.178 4.178 5 O -0.340 6.340 6 C 0.506 3.494 7 O -0.485 6.485 8 C 0.055 3.945 9 N -0.458 5.458 10 C 0.080 3.920 11 C -0.115 4.115 12 C -0.093 4.093 13 C -0.071 4.071 14 C -0.069 4.069 15 C 0.016 3.984 16 C -0.513 4.513 17 H 0.034 0.966 18 C 0.010 3.990 19 N -0.949 5.949 20 Si 0.937 3.063 21 H -0.274 1.274 22 H -0.275 1.275 23 H -0.253 1.253 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.203 0.797 34 H 0.191 0.809 35 H 0.165 0.835 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.011 0.989 39 H 0.004 0.996 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.113 9.381 8.041 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.070 3.930 3 C -0.186 4.186 4 C -0.235 4.235 5 O -0.257 6.257 6 C 0.349 3.651 7 O -0.372 6.372 8 C -0.079 4.079 9 N -0.169 5.169 10 C -0.081 4.081 11 C -0.134 4.134 12 C -0.118 4.118 13 C -0.073 4.073 14 C -0.106 4.106 15 C -0.021 4.021 16 C -0.551 4.551 17 H 0.053 0.947 18 C -0.187 4.187 19 N -0.590 5.590 20 Si 0.761 3.239 21 H -0.200 1.200 22 H -0.201 1.201 23 H -0.177 1.177 24 H 0.077 0.923 25 H 0.111 0.889 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.220 0.780 34 H 0.208 0.792 35 H 0.183 0.817 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.029 0.971 39 H 0.022 0.978 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.976 10.119 7.487 21.134 hybrid contribution -1.307 -0.634 -0.046 1.453 sum 15.670 9.485 7.441 19.770 Atomic orbital electron populations 1.22503 0.95090 1.03220 1.03464 1.22529 0.93797 0.94012 0.82702 1.21825 1.02529 0.90093 1.04136 1.22437 1.01858 1.01864 0.97341 1.86665 1.69368 1.23928 1.45724 1.21113 0.77481 0.81176 0.85334 1.90900 1.33967 1.69540 1.42796 1.19896 1.00334 0.92318 0.95381 1.67604 1.08629 1.37265 1.03426 1.23592 0.98404 0.92771 0.93348 1.22934 0.94591 0.95684 1.00174 1.21957 0.96175 1.01694 0.91993 1.21204 0.95562 0.93274 0.97287 1.20637 0.92970 0.98963 0.98068 1.19258 0.92330 0.95445 0.95109 1.21325 0.92805 1.24074 1.16945 0.94749 1.25826 0.97119 0.98040 0.97672 1.70044 1.04081 1.45735 1.39140 0.85852 0.77956 0.79515 0.80531 1.19959 1.20056 1.17674 0.92338 0.88893 0.93115 0.90665 0.88013 0.91461 0.92776 0.88940 0.91151 0.78013 0.79210 0.81725 0.90462 0.91100 0.97053 0.97762 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.10 8.37 71.98 0.60 -5.49 16 2 C 0.11 3.10 1.13 -10.80 -0.01 3.09 16 3 C -0.13 -2.64 8.85 71.98 0.64 -2.01 16 4 C -0.18 -5.02 8.37 71.98 0.60 -4.42 16 5 O -0.34 -12.02 9.71 -55.85 -0.54 -12.57 16 6 C 0.51 20.10 6.82 70.43 0.48 20.58 16 7 O -0.49 -21.82 7.31 20.09 0.15 -21.67 16 8 C 0.05 1.98 6.74 41.87 0.28 2.27 16 9 N -0.46 -14.08 10.12 -184.94 -1.87 -15.95 16 10 C 0.08 1.66 11.18 84.84 0.95 2.60 16 11 C -0.11 -2.03 10.12 22.44 0.23 -1.80 16 12 C -0.09 -2.33 9.81 22.45 0.22 -2.11 16 13 C -0.07 -2.48 5.19 -19.51 -0.10 -2.58 16 14 C -0.07 -2.95 4.57 29.85 0.14 -2.82 16 15 C 0.02 0.81 3.54 29.85 0.11 0.92 16 16 C -0.51 -31.37 9.66 25.60 0.25 -31.12 16 17 H 0.03 2.29 7.99 -2.91 -0.02 2.27 16 18 C 0.01 0.61 5.47 84.66 0.46 1.07 16 19 N -0.95 -61.69 13.96 21.45 0.30 -61.39 16 20 Si 0.94 47.28 27.47 68.60 1.88 49.16 16 21 H -0.27 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.25 -12.04 6.54 99.48 0.65 -11.39 16 24 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 26 H 0.05 2.13 5.88 -2.39 -0.01 2.11 16 27 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.91 5.88 -2.39 -0.01 1.90 16 31 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.20 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.08 3.64 5.92 -2.39 -0.01 3.62 16 37 H 0.07 2.84 8.02 -2.39 -0.02 2.82 16 38 H 0.01 0.56 7.20 -2.38 -0.02 0.54 16 39 H 0.00 0.22 5.86 -2.39 -0.01 0.21 16 40 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -78.45 325.40 5.73 -72.72 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.97 Total: 11.52 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 4.84 Total: -21.82 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -1.57 Total: -77.34 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.40 Total: -34.24 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.88 Total: 49.16 kcal Total: -78.45 5.73 -72.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059256.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.985 kcal (2) G-P(sol) polarization free energy of solvation -78.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds