Wall clock time and date at job start Mon Mar 30 2020 02:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46508 * 119.99936 * 2 1 4 4 C 1.50695 * 109.46843 * 270.00117 * 3 2 1 5 5 H 1.08004 * 120.00537 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99935 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00458 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99806 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47245 * 90.00041 * 8 6 4 10 10 H 1.48504 * 109.46939 * 210.00125 * 8 6 4 11 11 H 1.48499 * 109.47176 * 329.99877 * 8 6 4 12 12 C 1.34771 * 120.00200 * 180.02562 * 2 1 3 13 13 O 1.21284 * 119.99814 * 185.53720 * 12 2 1 14 14 C 1.50699 * 119.99903 * 5.53762 * 12 2 1 15 15 C 1.52993 * 109.47043 * 64.95171 * 14 12 2 16 16 C 1.53000 * 109.46888 * 304.95026 * 14 12 2 17 17 O 1.42905 * 109.46887 * 184.95335 * 14 12 2 18 18 C 1.35898 * 117.00225 * 60.52679 * 17 14 12 19 19 C 1.38734 * 120.05499 * 174.72996 * 18 17 14 20 20 C 1.38145 * 119.93981 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05705 * 359.97438 * 20 19 18 22 22 C 1.38261 * 120.11450 * 0.04230 * 21 20 19 23 23 C 1.38140 * 120.05303 * 359.95475 * 22 21 20 24 24 H 1.08997 * 109.46865 * 275.06253 * 1 2 3 25 25 H 1.09004 * 109.47031 * 35.06184 * 1 2 3 26 26 H 1.08995 * 109.46845 * 155.05735 * 1 2 3 27 27 H 1.08998 * 109.47170 * 29.99795 * 3 2 1 28 28 H 1.09000 * 109.47155 * 149.99944 * 3 2 1 29 29 H 0.96999 * 120.00263 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47126 * 187.27073 * 15 14 12 31 31 H 1.08993 * 109.47437 * 307.27291 * 15 14 12 32 32 H 1.09004 * 109.47410 * 67.27471 * 15 14 12 33 33 H 1.08998 * 109.47608 * 294.55481 * 16 14 12 34 34 H 1.08993 * 109.47133 * 54.56324 * 16 14 12 35 35 H 1.09007 * 109.46770 * 174.55769 * 16 14 12 36 36 H 1.07997 * 120.02839 * 359.70767 * 19 18 17 37 37 H 1.07998 * 119.97144 * 179.97438 * 20 19 18 38 38 H 1.08006 * 119.94084 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.97077 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.02823 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.3447 3.2580 -2.9127 8 14 3.7316 3.9300 -0.2529 9 1 5.1049 3.5094 0.1241 10 1 3.7464 5.3566 -0.6651 11 1 2.8249 3.7604 0.9108 12 6 2.1389 -1.1671 -0.0005 13 8 3.3475 -1.1695 0.1008 14 6 1.3907 -2.4691 -0.1270 15 6 0.7191 -2.5400 -1.4998 16 6 0.3247 -2.5531 0.9673 17 8 2.3043 -3.5590 0.0132 18 6 2.9807 -3.6498 1.1884 19 6 3.8004 -4.7415 1.4358 20 6 4.4873 -4.8311 2.6310 21 6 4.3588 -3.8338 3.5800 22 6 3.5423 -2.7450 3.3361 23 6 2.8533 -2.6507 2.1424 24 1 -0.3633 0.0907 1.0236 25 1 -0.3633 0.8412 -0.5904 26 1 -0.3633 -0.9318 -0.4334 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.8215 4.0839 -3.0899 30 1 0.0746 -3.4179 -1.5441 31 1 0.1217 -1.6424 -1.6589 32 1 1.4825 -2.6104 -2.2747 33 1 0.8084 -2.6001 1.9429 34 1 -0.3142 -1.6714 0.9205 35 1 -0.2795 -3.4480 0.8179 36 1 3.8980 -5.5226 0.6964 37 1 5.1252 -5.6808 2.8243 38 1 4.8970 -3.9056 4.5137 39 1 3.4433 -1.9676 4.0792 40 1 2.2159 -1.7998 1.9521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318858125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:08 Heat of formation + Delta-G solvation = -4.084916 kcal Electronic energy + Delta-G solvation = -22614.866798 eV Core-core repulsion = 19397.071321 eV Total energy + Delta-G solvation = -3217.795477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.20047 -38.71880 -37.09123 -35.39395 -33.52502 -32.24425 -30.81456 -29.74121 -28.33785 -27.36467 -26.47272 -23.60565 -22.81696 -22.25139 -21.07701 -19.26575 -17.59287 -17.02556 -16.54959 -16.11857 -15.70545 -15.21919 -14.86625 -14.61384 -14.22826 -13.87058 -13.66557 -13.43801 -13.31931 -13.08227 -12.60479 -12.42012 -12.20467 -11.97677 -11.85358 -11.80056 -11.70442 -11.45362 -11.05843 -10.88059 -10.69013 -10.59010 -10.45578 -10.18905 -9.59738 -9.07642 -8.75536 -8.63559 -7.95874 -7.72426 -6.13462 -4.12975 1.54165 1.65769 3.06773 3.23792 3.26574 3.31722 3.34127 3.65335 3.98538 4.35384 4.68762 4.75538 4.86326 5.05371 5.05489 5.19707 5.24344 5.27962 5.43994 5.50988 5.55444 5.60297 5.64251 5.71486 5.74293 5.87071 5.91744 6.12195 6.15718 6.23593 6.50048 6.58944 6.60411 6.69409 6.86709 6.93145 7.20355 7.53967 7.57035 8.07130 8.40258 8.76922 8.89505 9.46298 10.99729 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.005883 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.773706 B = 4758.256588 C = 5424.254704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.591 5.591 3 C 0.215 3.785 4 C -0.532 4.532 5 H 0.075 0.925 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.488 3.512 13 O -0.519 6.519 14 C 0.097 3.903 15 C -0.144 4.144 16 C -0.220 4.220 17 O -0.289 6.289 18 C 0.148 3.852 19 C -0.157 4.157 20 C -0.089 4.089 21 C -0.164 4.164 22 C -0.087 4.087 23 C -0.183 4.183 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.265 0.735 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 -13.433 10.720 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.324 5.324 3 C 0.094 3.906 4 C -0.570 4.570 5 H 0.093 0.907 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.273 3.727 13 O -0.394 6.394 14 C 0.055 3.945 15 C -0.201 4.201 16 C -0.277 4.277 17 O -0.201 6.201 18 C 0.103 3.897 19 C -0.176 4.176 20 C -0.107 4.107 21 C -0.182 4.182 22 C -0.105 4.105 23 C -0.202 4.202 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.477 -13.390 10.483 18.197 hybrid contribution 0.380 0.990 0.579 1.208 sum -6.097 -12.400 11.061 17.700 Atomic orbital electron populations 1.22341 0.81404 1.03743 1.01107 1.47791 1.06133 1.06890 1.71616 1.19708 0.92559 0.79725 0.98565 1.21299 1.37329 1.07261 0.91129 0.90685 1.24844 0.95140 0.97319 0.95575 1.69887 1.41271 1.23561 1.18646 0.86862 0.80189 0.79818 0.82901 1.19875 1.20973 1.19075 1.20672 0.88495 0.85446 0.78061 1.90764 1.13640 1.86466 1.48576 1.21762 0.88514 0.85402 0.98810 1.21992 1.01129 1.03790 0.93175 1.23385 0.99512 1.05356 0.99433 1.86140 1.53719 1.46291 1.33988 1.18849 0.92131 0.93944 0.84818 1.20340 1.00333 0.98074 0.98858 1.20836 0.98291 0.98666 0.92913 1.20951 1.01628 0.95587 1.00046 1.20910 0.95740 0.97458 0.96406 1.21530 1.04408 0.99102 0.95134 0.92985 0.90345 0.89988 0.95044 0.94398 0.92482 0.90696 0.88757 0.90523 0.90089 0.88068 0.90646 0.85586 0.85821 0.86393 0.86264 0.85226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.81 8.22 59.85 0.49 1.31 16 2 N -0.59 -11.80 2.86 -182.95 -0.52 -12.33 16 3 C 0.21 5.18 4.30 -5.19 -0.02 5.16 16 4 C -0.53 -15.09 9.94 -34.44 -0.34 -15.44 16 5 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 7 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 8 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 9 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 12 C 0.49 10.01 4.36 -10.99 -0.05 9.96 16 13 O -0.52 -13.00 13.75 -14.31 -0.20 -13.20 16 14 C 0.10 1.55 0.84 -91.78 -0.08 1.48 16 15 C -0.14 -1.97 8.51 37.15 0.32 -1.65 16 16 C -0.22 -2.68 7.75 37.16 0.29 -2.40 16 17 O -0.29 -5.08 9.60 -39.28 -0.38 -5.46 16 18 C 0.15 2.55 5.57 -39.21 -0.22 2.33 16 19 C -0.16 -2.36 9.99 -39.43 -0.39 -2.75 16 20 C -0.09 -1.16 10.04 -39.61 -0.40 -1.56 16 21 C -0.16 -2.16 10.04 -39.56 -0.40 -2.56 16 22 C -0.09 -1.29 10.04 -39.61 -0.40 -1.69 16 23 C -0.18 -3.11 5.74 -39.43 -0.23 -3.34 16 24 H 0.05 0.61 7.44 -51.93 -0.39 0.22 16 25 H 0.08 1.16 8.11 -51.93 -0.42 0.74 16 26 H 0.08 0.95 3.01 -51.93 -0.16 0.80 16 27 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 28 H 0.04 0.99 6.78 -51.93 -0.35 0.64 16 29 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 30 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.09 1.20 5.32 -51.93 -0.28 0.93 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.05 4.76 -51.93 -0.25 0.80 16 34 H 0.10 1.06 3.70 -51.93 -0.19 0.87 16 35 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 36 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 39 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.13 2.28 3.78 -52.48 -0.20 2.08 16 LS Contribution 312.20 15.07 4.70 4.70 Total: -1.00 -34.87 312.20 -6.96 -41.82 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.15 Total: 3.41 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.52 Total: -9.11 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.25 Total: -39.01 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.57 Total: -18.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.87 -6.96 -41.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318858125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.739 kcal (2) G-P(sol) polarization free energy of solvation -34.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds