Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46508 * 119.99936 * 2 1 4 4 C 1.50695 * 109.46843 * 270.00117 * 3 2 1 5 5 H 1.08004 * 120.00537 * 359.97438 * 4 3 2 6 6 C 1.37878 * 119.99935 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00458 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99806 * 359.97438 * 6 4 3 9 9 H 1.48493 * 109.47245 * 90.00041 * 8 6 4 10 10 H 1.48504 * 109.46939 * 210.00125 * 8 6 4 11 11 H 1.48499 * 109.47176 * 329.99877 * 8 6 4 12 12 C 1.34771 * 120.00200 * 180.02562 * 2 1 3 13 13 O 1.21284 * 119.99814 * 185.53720 * 12 2 1 14 14 C 1.50699 * 119.99903 * 5.53762 * 12 2 1 15 15 C 1.52993 * 109.47043 * 64.95171 * 14 12 2 16 16 C 1.53000 * 109.46888 * 304.95026 * 14 12 2 17 17 O 1.42905 * 109.46887 * 184.95335 * 14 12 2 18 18 C 1.35898 * 117.00225 * 60.52679 * 17 14 12 19 19 C 1.38734 * 120.05499 * 174.72996 * 18 17 14 20 20 C 1.38145 * 119.93981 * 179.97438 * 19 18 17 21 21 C 1.38266 * 120.05705 * 359.97438 * 20 19 18 22 22 C 1.38261 * 120.11450 * 0.04230 * 21 20 19 23 23 C 1.38140 * 120.05303 * 359.95475 * 22 21 20 24 24 H 1.08997 * 109.46865 * 275.06253 * 1 2 3 25 25 H 1.09004 * 109.47031 * 35.06184 * 1 2 3 26 26 H 1.08995 * 109.46845 * 155.05735 * 1 2 3 27 27 H 1.08998 * 109.47170 * 29.99795 * 3 2 1 28 28 H 1.09000 * 109.47155 * 149.99944 * 3 2 1 29 29 H 0.96999 * 120.00263 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47126 * 187.27073 * 15 14 12 31 31 H 1.08993 * 109.47437 * 307.27291 * 15 14 12 32 32 H 1.09004 * 109.47410 * 67.27471 * 15 14 12 33 33 H 1.08998 * 109.47608 * 294.55481 * 16 14 12 34 34 H 1.08993 * 109.47133 * 54.56324 * 16 14 12 35 35 H 1.09007 * 109.46770 * 174.55769 * 16 14 12 36 36 H 1.07997 * 120.02839 * 359.70767 * 19 18 17 37 37 H 1.07998 * 119.97144 * 179.97438 * 20 19 18 38 38 H 1.08006 * 119.94084 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.97077 * 179.97438 * 22 21 20 40 40 H 1.08004 * 120.02823 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.3447 3.2580 -2.9127 8 14 3.7316 3.9300 -0.2529 9 1 5.1049 3.5094 0.1241 10 1 3.7464 5.3566 -0.6651 11 1 2.8249 3.7604 0.9108 12 6 2.1389 -1.1671 -0.0005 13 8 3.3475 -1.1695 0.1008 14 6 1.3907 -2.4691 -0.1270 15 6 0.7191 -2.5400 -1.4998 16 6 0.3247 -2.5531 0.9673 17 8 2.3043 -3.5590 0.0132 18 6 2.9807 -3.6498 1.1884 19 6 3.8004 -4.7415 1.4358 20 6 4.4873 -4.8311 2.6310 21 6 4.3588 -3.8338 3.5800 22 6 3.5423 -2.7450 3.3361 23 6 2.8533 -2.6507 2.1424 24 1 -0.3633 0.0907 1.0236 25 1 -0.3633 0.8412 -0.5904 26 1 -0.3633 -0.9318 -0.4334 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 3.8215 4.0839 -3.0899 30 1 0.0746 -3.4179 -1.5441 31 1 0.1217 -1.6424 -1.6589 32 1 1.4825 -2.6104 -2.2747 33 1 0.8084 -2.6001 1.9429 34 1 -0.3142 -1.6714 0.9205 35 1 -0.2795 -3.4480 0.8179 36 1 3.8980 -5.5226 0.6964 37 1 5.1252 -5.6808 2.8243 38 1 4.8970 -3.9056 4.5137 39 1 3.4433 -1.9676 4.0792 40 1 2.2159 -1.7998 1.9521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318858125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = -27.054456 kcal Electronic energy + Delta-G solvation = -22615.862832 eV Core-core repulsion = 19397.071321 eV Total energy + Delta-G solvation = -3218.791511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.51124 -40.04112 -38.33674 -36.99049 -35.21777 -34.04028 -31.92036 -30.94605 -30.11034 -28.43650 -27.84644 -25.26459 -24.17333 -23.36571 -22.50224 -20.67335 -19.18556 -18.91662 -17.87250 -17.44797 -17.00511 -16.61508 -16.44227 -16.06014 -15.47835 -15.40975 -14.96723 -14.66498 -14.58772 -14.37199 -14.23219 -13.78423 -13.62969 -13.39053 -13.20450 -13.16279 -12.93324 -12.74366 -12.61526 -12.51883 -12.04815 -11.96835 -11.83868 -11.77476 -11.59651 -10.86871 -10.59072 -9.87418 -9.50151 -9.02261 -8.37445 -6.42776 0.43211 0.53595 1.29087 1.33674 1.41395 1.55478 2.00407 2.22901 2.27464 2.86918 2.96952 3.38885 3.64326 3.73202 3.95161 3.98998 4.14743 4.26739 4.36787 4.50326 4.52539 4.57361 4.58836 4.63724 4.67504 4.74842 4.78307 4.86284 4.91403 5.08075 5.12708 5.15129 5.39726 5.41950 5.50313 5.51087 5.60635 5.86650 6.18651 6.35896 6.55914 6.58913 7.14338 7.27512 8.79286 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019927 B = 0.005883 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.773706 B = 4758.256588 C = 5424.254704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.597 5.597 3 C 0.223 3.777 4 C -0.537 4.537 5 H 0.032 0.968 6 C 0.013 3.987 7 N -0.943 5.943 8 Si 0.945 3.055 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.236 1.236 12 C 0.480 3.520 13 O -0.577 6.577 14 C 0.100 3.900 15 C -0.144 4.144 16 C -0.212 4.212 17 O -0.306 6.306 18 C 0.118 3.882 19 C -0.171 4.171 20 C -0.085 4.085 21 C -0.161 4.161 22 C -0.101 4.101 23 C -0.202 4.202 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.055 0.945 28 H 0.016 0.984 29 H 0.269 0.731 30 H 0.113 0.887 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.134 0.866 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 -14.333 13.330 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.329 5.329 3 C 0.101 3.899 4 C -0.576 4.576 5 H 0.050 0.950 6 C -0.185 4.185 7 N -0.583 5.583 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.159 1.159 12 C 0.268 3.732 13 O -0.457 6.457 14 C 0.058 3.942 15 C -0.200 4.200 16 C -0.268 4.268 17 O -0.219 6.219 18 C 0.074 3.926 19 C -0.190 4.190 20 C -0.103 4.103 21 C -0.179 4.179 22 C -0.120 4.120 23 C -0.221 4.221 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.128 0.872 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.132 0.868 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.155 0.845 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.152 0.848 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.745 -14.307 13.103 20.889 hybrid contribution 0.779 1.185 -0.285 1.447 sum -6.965 -13.121 12.818 19.621 Atomic orbital electron populations 1.22734 0.77883 1.05169 1.03635 1.47850 1.08375 1.05484 1.71150 1.19364 0.92746 0.82278 0.95517 1.21537 1.36982 1.06756 0.92307 0.95002 1.25813 0.95251 0.98939 0.98502 1.70037 1.42582 1.24488 1.21204 0.85763 0.79450 0.77956 0.80076 1.20644 1.19790 1.15919 1.21632 0.88193 0.87014 0.76410 1.90712 1.16354 1.87512 1.51150 1.21944 0.88638 0.82378 1.01252 1.22081 1.00839 1.06034 0.91079 1.23365 0.98460 1.07574 0.97402 1.86100 1.54498 1.46535 1.34768 1.19193 0.93429 0.95123 0.84890 1.20706 1.00214 0.97940 1.00123 1.21292 0.97629 0.99575 0.91814 1.21371 1.00680 0.94627 1.01227 1.21228 0.95891 0.98670 0.96164 1.21550 1.05402 0.98934 0.96187 0.89382 0.90859 0.87164 0.92710 0.96621 0.92222 0.86821 0.87906 0.93207 0.90847 0.86193 0.87876 0.84459 0.82276 0.83190 0.84802 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.23 8.22 127.77 1.05 2.28 16 2 N -0.60 -23.78 2.86 -851.13 -2.43 -26.21 16 3 C 0.22 10.83 4.30 85.63 0.37 11.19 16 4 C -0.54 -31.51 9.94 25.60 0.25 -31.25 16 5 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 6 C 0.01 0.78 5.47 84.66 0.46 1.25 16 7 N -0.94 -59.68 13.96 21.45 0.30 -59.38 16 8 Si 0.94 44.58 27.47 68.60 1.88 46.47 16 9 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.24 -9.92 6.54 99.48 0.65 -9.26 16 12 C 0.48 20.05 4.36 87.66 0.38 20.44 16 13 O -0.58 -30.28 13.75 15.95 0.22 -30.06 16 14 C 0.10 3.13 0.84 -11.54 -0.01 3.12 16 15 C -0.14 -3.79 8.51 71.98 0.61 -3.18 16 16 C -0.21 -4.66 7.75 71.98 0.56 -4.10 16 17 O -0.31 -10.85 9.60 -73.41 -0.70 -11.55 16 18 C 0.12 4.09 5.57 22.51 0.13 4.21 16 19 C -0.17 -4.99 9.99 22.37 0.22 -4.77 16 20 C -0.09 -2.03 10.04 22.25 0.22 -1.80 16 21 C -0.16 -3.87 10.04 22.28 0.22 -3.64 16 22 C -0.10 -2.91 10.04 22.25 0.22 -2.69 16 23 C -0.20 -6.87 5.74 22.37 0.13 -6.74 16 24 H 0.09 1.74 7.44 -2.39 -0.02 1.72 16 25 H 0.07 2.04 8.11 -2.39 -0.02 2.03 16 26 H 0.11 2.27 3.01 -2.39 -0.01 2.26 16 27 H 0.06 2.40 7.13 -2.39 -0.02 2.38 16 28 H 0.02 0.83 6.78 -2.39 -0.02 0.82 16 29 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 30 H 0.11 2.09 8.13 -2.39 -0.02 2.08 16 31 H 0.10 2.48 5.32 -2.39 -0.01 2.47 16 32 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.07 1.79 4.76 -2.39 -0.01 1.77 16 34 H 0.12 2.10 3.70 -2.39 -0.01 2.09 16 35 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 37 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 38 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.13 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.12 4.16 3.78 -2.91 -0.01 4.15 16 Total: -1.00 -81.22 312.20 5.09 -76.13 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 1.00 Total: 20.28 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.83 Total: -15.68 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -2.13 Total: -85.59 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -0.49 Total: -41.61 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.47 kcal Total: -81.22 5.09 -76.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318858125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.074 kcal (2) G-P(sol) polarization free energy of solvation -81.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds