Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47311 * 2 1 4 4 C 1.52999 * 109.46843 * 120.00175 * 2 1 3 5 5 O 1.42900 * 109.47579 * 64.99672 * 4 2 1 6 6 N 1.41590 * 114.00124 * 179.97438 * 5 4 2 7 7 C 1.34784 * 119.99878 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99906 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.46813 * 180.02562 * 9 7 6 11 11 C 1.37640 * 120.13180 * 265.30632 * 10 9 7 12 12 C 1.38613 * 120.24862 * 180.32332 * 11 10 9 13 13 C 1.38655 * 120.50174 * 359.67182 * 12 11 10 14 14 C 1.37598 * 120.24576 * 359.97438 * 13 12 11 15 15 C 1.40702 * 120.12495 * 85.00356 * 10 9 7 16 16 C 1.41393 * 120.24620 * 359.97406 * 15 10 9 17 17 H 1.07999 * 119.99787 * 29.07372 * 16 15 10 18 18 C 1.39938 * 120.00244 * 209.07592 * 16 15 10 19 19 N 1.30823 * 120.00241 * 197.10039 * 18 16 15 20 20 Si 1.86803 * 119.99882 * 17.09514 * 18 16 15 21 21 H 1.48495 * 109.47432 * 270.00073 * 20 18 16 22 22 H 1.48498 * 109.46929 * 30.00589 * 20 18 16 23 23 H 1.48504 * 109.46998 * 150.00206 * 20 18 16 24 24 H 1.08998 * 109.47273 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47160 * 300.00359 * 1 2 3 26 26 H 1.09004 * 109.46590 * 59.99667 * 1 2 3 27 27 H 1.08998 * 109.47457 * 240.00047 * 2 1 3 28 28 H 1.08999 * 109.46874 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47050 * 299.99742 * 3 2 1 30 30 H 1.08998 * 109.46821 * 59.99658 * 3 2 1 31 31 H 1.09001 * 109.47223 * 304.99658 * 4 2 1 32 32 H 1.09004 * 109.47186 * 185.00038 * 4 2 1 33 33 H 0.96998 * 120.00191 * 0.02562 * 6 5 4 34 34 H 1.08999 * 109.47299 * 60.00523 * 9 7 6 35 35 H 1.08998 * 109.47401 * 299.99992 * 9 7 6 36 36 H 1.08005 * 119.87130 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.74473 * 179.69460 * 12 11 10 38 38 H 1.08002 * 119.87493 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.12022 * 180.02562 * 14 13 12 40 40 H 0.97004 * 119.99819 * 355.45620 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1921 6 7 2.0883 -2.8593 2.3073 7 6 1.7962 -4.1732 2.3778 8 8 1.1685 -4.7036 1.4859 9 6 2.2495 -4.9832 3.5651 10 6 1.7988 -6.4117 3.4001 11 6 0.6198 -6.8345 3.9707 12 6 0.2063 -8.1496 3.8262 13 6 0.9698 -9.0518 3.1011 14 6 2.1483 -8.6493 2.5159 15 6 2.5786 -7.3168 2.6568 16 6 3.7881 -6.8921 2.0602 17 1 4.3596 -6.0927 2.5083 18 6 4.2446 -7.5074 0.8892 19 7 5.4917 -7.3669 0.5198 20 14 3.0732 -8.5295 -0.1465 21 1 3.1088 -9.9410 0.3134 22 1 1.6941 -7.9973 -0.0047 23 1 3.4855 -8.4627 -1.5716 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6053 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 2.5899 -2.4350 3.0208 34 1 1.8163 -4.5679 4.4750 35 1 3.3369 -4.9512 3.6329 36 1 0.0170 -6.1402 4.5373 37 1 -0.7178 -8.4739 4.2815 38 1 0.6378 -10.0740 2.9946 39 1 2.7412 -9.3536 1.9512 40 1 6.0831 -6.7835 1.0207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319862191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = -32.475063 kcal Electronic energy + Delta-G solvation = -21337.281380 eV Core-core repulsion = 18118.254814 eV Total energy + Delta-G solvation = -3219.026566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.14595 -37.97894 -37.14638 -35.02501 -33.63668 -32.21137 -31.06332 -30.12591 -27.35890 -26.98042 -25.82557 -24.45617 -21.48772 -20.96046 -20.31763 -19.27666 -18.10362 -17.88531 -16.38693 -15.95234 -15.42238 -14.98668 -14.65256 -14.21272 -14.18578 -13.81392 -13.57150 -13.38680 -12.98269 -12.59012 -12.47829 -12.36574 -12.09803 -11.91065 -11.56657 -11.31545 -11.25868 -11.21397 -10.94155 -10.76135 -10.62635 -10.27548 -10.11711 -9.66740 -9.26125 -9.22308 -8.92869 -8.48892 -7.63139 -7.57985 -7.15171 -4.47493 2.13397 2.74083 2.78791 3.29900 3.35676 3.49330 3.71957 4.13954 4.51030 4.61543 4.64963 4.65867 5.01129 5.21256 5.25668 5.29459 5.40335 5.47155 5.57513 5.63665 5.71922 5.77745 5.84710 5.86996 6.07734 6.08827 6.18240 6.18431 6.23245 6.55033 6.77193 7.08362 7.17991 7.37621 7.53592 7.69063 7.72173 7.80512 7.87724 8.03499 8.42716 8.62762 8.83391 8.90849 10.10815 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.004917 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.202592 B = 5693.529763 C = 6478.673671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.143 4.143 4 C 0.037 3.963 5 O -0.149 6.149 6 N -0.612 5.612 7 C 0.526 3.474 8 O -0.498 6.498 9 C -0.055 4.055 10 C -0.177 4.177 11 C -0.064 4.064 12 C -0.246 4.246 13 C -0.074 4.074 14 C -0.244 4.244 15 C 0.117 3.883 16 C -0.513 4.513 17 H 0.075 0.925 18 C 0.048 3.952 19 N -0.821 5.821 20 Si 1.069 2.931 21 H -0.279 1.279 22 H -0.257 1.257 23 H -0.292 1.292 24 H 0.066 0.934 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.399 0.601 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.414 13.573 3.363 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.041 4.041 5 O -0.152 6.152 6 N -0.317 5.317 7 C 0.314 3.686 8 O -0.368 6.368 9 C -0.095 4.095 10 C -0.179 4.179 11 C -0.082 4.082 12 C -0.265 4.265 13 C -0.092 4.092 14 C -0.263 4.263 15 C 0.114 3.886 16 C -0.541 4.541 17 H 0.093 0.907 18 C -0.171 4.171 19 N -0.444 5.444 20 Si 0.896 3.104 21 H -0.206 1.206 22 H -0.181 1.181 23 H -0.220 1.220 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.238 0.762 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.972 12.167 1.172 13.196 hybrid contribution 0.666 1.632 1.777 2.503 sum -4.306 13.799 2.949 14.753 Atomic orbital electron populations 1.21831 0.94265 1.02921 1.01480 1.21059 0.97004 0.95606 0.97343 1.21780 1.01177 0.94827 1.02313 1.23016 0.99489 0.82424 0.99165 1.90582 1.76288 1.18910 1.29434 1.48006 1.60480 1.06818 1.16412 1.21384 0.79572 0.78320 0.89341 1.90707 1.38128 1.68965 1.38978 1.20193 1.02607 0.93200 0.93520 1.18930 0.97516 0.92040 1.09407 1.20432 0.94680 0.95172 0.97938 1.20329 1.01856 0.94541 1.09806 1.20622 0.94612 0.97480 0.96498 1.21137 0.99923 0.96208 1.09040 1.17500 0.91321 0.90385 0.89407 1.20540 1.05484 1.18915 1.09195 0.90698 1.27159 0.97108 0.96178 0.96643 1.70574 1.04026 1.28237 1.41587 0.83656 0.76554 0.75702 0.74473 1.20601 1.18137 1.21988 0.91533 0.92809 0.92542 0.89896 0.92373 0.91778 0.92456 0.92566 0.92463 0.76228 0.89983 0.88517 0.89047 0.88915 0.88803 0.87702 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.09 37.16 0.34 -1.21 16 2 C -0.09 -0.94 3.16 -90.62 -0.29 -1.23 16 3 C -0.14 -1.10 9.19 37.16 0.34 -0.76 16 4 C 0.04 0.43 5.61 37.16 0.21 0.64 16 5 O -0.15 -2.55 10.64 -29.66 -0.32 -2.86 16 6 N -0.61 -10.17 6.39 31.22 0.20 -9.97 16 7 C 0.53 11.00 7.97 -10.98 -0.09 10.91 16 8 O -0.50 -13.08 16.44 -12.64 -0.21 -13.29 16 9 C -0.06 -1.05 5.36 -29.03 -0.16 -1.20 16 10 C -0.18 -4.12 4.43 -103.91 -0.46 -4.58 16 11 C -0.06 -1.39 9.66 -39.66 -0.38 -1.77 16 12 C -0.25 -5.33 10.05 -39.29 -0.39 -5.72 16 13 C -0.07 -1.67 10.02 -39.66 -0.40 -2.07 16 14 C -0.24 -6.13 7.26 -38.87 -0.28 -6.42 16 15 C 0.12 3.03 5.13 -106.83 -0.55 2.49 16 16 C -0.51 -13.85 8.80 -37.75 -0.33 -14.19 16 17 H 0.08 2.00 6.60 -52.49 -0.35 1.66 16 18 C 0.05 1.31 5.42 -17.34 -0.09 1.22 16 19 N -0.82 -22.72 13.65 55.55 0.76 -21.96 16 20 Si 1.07 26.49 24.89 -169.99 -4.23 22.26 16 21 H -0.28 -6.42 6.45 56.52 0.36 -6.06 16 22 H -0.26 -6.68 7.01 56.52 0.40 -6.28 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H 0.07 0.86 7.82 -51.93 -0.41 0.45 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 4.81 8.54 -40.82 -0.35 4.46 16 34 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 35 H 0.10 1.78 6.51 -51.93 -0.34 1.44 16 36 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.11 2.62 4.43 -52.48 -0.23 2.38 16 40 H 0.28 7.53 8.73 -40.82 -0.36 7.17 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -33.04 333.74 -7.24 -40.28 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.94 Total: 4.40 kcal Atomic # 6 Polarization: -21.35 SS G_CDS: -2.53 Total: -23.89 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.96 Total: -31.93 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.52 Total: -16.16 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.23 Total: 22.26 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.04 -7.24 -40.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319862191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.803 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds