Wall clock time and date at job start Mon Mar 30 2020 02:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47311 * 2 1 4 4 C 1.52999 * 109.46843 * 120.00175 * 2 1 3 5 5 O 1.42900 * 109.47579 * 64.99672 * 4 2 1 6 6 N 1.41590 * 114.00124 * 179.97438 * 5 4 2 7 7 C 1.34784 * 119.99878 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99871 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99906 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.46813 * 180.02562 * 9 7 6 11 11 C 1.37640 * 120.13180 * 265.30632 * 10 9 7 12 12 C 1.38613 * 120.24862 * 180.32332 * 11 10 9 13 13 C 1.38655 * 120.50174 * 359.67182 * 12 11 10 14 14 C 1.37598 * 120.24576 * 359.97438 * 13 12 11 15 15 C 1.40702 * 120.12495 * 85.00356 * 10 9 7 16 16 C 1.41393 * 120.24620 * 359.97406 * 15 10 9 17 17 H 1.07999 * 119.99787 * 29.07372 * 16 15 10 18 18 C 1.39938 * 120.00244 * 209.07592 * 16 15 10 19 19 N 1.30823 * 120.00241 * 197.10039 * 18 16 15 20 20 Si 1.86803 * 119.99882 * 17.09514 * 18 16 15 21 21 H 1.48495 * 109.47432 * 270.00073 * 20 18 16 22 22 H 1.48498 * 109.46929 * 30.00589 * 20 18 16 23 23 H 1.48504 * 109.46998 * 150.00206 * 20 18 16 24 24 H 1.08998 * 109.47273 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47160 * 300.00359 * 1 2 3 26 26 H 1.09004 * 109.46590 * 59.99667 * 1 2 3 27 27 H 1.08998 * 109.47457 * 240.00047 * 2 1 3 28 28 H 1.08999 * 109.46874 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47050 * 299.99742 * 3 2 1 30 30 H 1.08998 * 109.46821 * 59.99658 * 3 2 1 31 31 H 1.09001 * 109.47223 * 304.99658 * 4 2 1 32 32 H 1.09004 * 109.47186 * 185.00038 * 4 2 1 33 33 H 0.96998 * 120.00191 * 0.02562 * 6 5 4 34 34 H 1.08999 * 109.47299 * 60.00523 * 9 7 6 35 35 H 1.08998 * 109.47401 * 299.99992 * 9 7 6 36 36 H 1.08005 * 119.87130 * 0.02562 * 11 10 9 37 37 H 1.08001 * 119.74473 * 179.69460 * 12 11 10 38 38 H 1.08002 * 119.87493 * 180.02562 * 13 12 11 39 39 H 1.08003 * 120.12022 * 180.02562 * 14 13 12 40 40 H 0.97004 * 119.99819 * 355.45620 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6619 -2.0982 1.1921 6 7 2.0883 -2.8593 2.3073 7 6 1.7962 -4.1732 2.3778 8 8 1.1685 -4.7036 1.4859 9 6 2.2495 -4.9832 3.5651 10 6 1.7988 -6.4117 3.4001 11 6 0.6198 -6.8345 3.9707 12 6 0.2063 -8.1496 3.8262 13 6 0.9698 -9.0518 3.1011 14 6 2.1483 -8.6493 2.5159 15 6 2.5786 -7.3168 2.6568 16 6 3.7881 -6.8921 2.0602 17 1 4.3596 -6.0927 2.5083 18 6 4.2446 -7.5074 0.8892 19 7 5.4917 -7.3669 0.5198 20 14 3.0732 -8.5295 -0.1465 21 1 3.1088 -9.9410 0.3134 22 1 1.6941 -7.9973 -0.0047 23 1 3.4855 -8.4627 -1.5716 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6053 -0.2618 2.1370 32 1 3.1263 -0.6444 1.2952 33 1 2.5899 -2.4350 3.0208 34 1 1.8163 -4.5679 4.4750 35 1 3.3369 -4.9512 3.6329 36 1 0.0170 -6.1402 4.5373 37 1 -0.7178 -8.4739 4.2815 38 1 0.6378 -10.0740 2.9946 39 1 2.7412 -9.3536 1.9512 40 1 6.0831 -6.7835 1.0207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319862191.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:43 Heat of formation + Delta-G solvation = -53.163108 kcal Electronic energy + Delta-G solvation = -21338.178481 eV Core-core repulsion = 18118.254814 eV Total energy + Delta-G solvation = -3219.923667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.75388 -39.47563 -38.58323 -36.09328 -35.59320 -33.84602 -32.57388 -31.98512 -28.54183 -28.09924 -26.91284 -26.28580 -23.28361 -22.49093 -21.48345 -20.80535 -20.02237 -19.21082 -17.91038 -17.18524 -17.07411 -16.51761 -16.04633 -15.88384 -15.55215 -15.37629 -15.00646 -14.83932 -14.37668 -14.04524 -13.89873 -13.69029 -13.49471 -13.08869 -13.04069 -12.88668 -12.61902 -12.34677 -12.18392 -12.13821 -11.95112 -11.80934 -11.63015 -11.58668 -11.14575 -10.92715 -10.84895 -9.88811 -9.55598 -9.35197 -9.14542 -6.48271 0.65529 0.91771 1.12691 1.31191 1.52973 1.73021 1.76011 2.15980 2.70733 3.41839 3.60502 3.77038 3.83075 3.94943 4.13745 4.24725 4.26574 4.38275 4.48093 4.50394 4.54783 4.61728 4.66262 4.75674 4.89650 4.92174 4.95785 4.99176 5.14964 5.25716 5.30563 5.35580 5.51906 5.61596 5.82445 5.86410 5.90096 6.03994 6.18957 6.42562 6.50557 6.74812 6.88470 7.42163 8.07957 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018234 B = 0.004917 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.202592 B = 5693.529763 C = 6478.673671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.136 4.136 4 C 0.029 3.971 5 O -0.181 6.181 6 N -0.593 5.593 7 C 0.525 3.475 8 O -0.564 6.564 9 C -0.054 4.054 10 C -0.181 4.181 11 C -0.075 4.075 12 C -0.232 4.232 13 C -0.086 4.086 14 C -0.267 4.267 15 C 0.087 3.913 16 C -0.534 4.534 17 H 0.063 0.937 18 C 0.015 3.985 19 N -0.853 5.853 20 Si 1.095 2.905 21 H -0.254 1.254 22 H -0.280 1.280 23 H -0.288 1.288 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.422 0.578 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.131 14.921 5.252 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.194 4.194 4 C -0.047 4.047 5 O -0.185 6.185 6 N -0.298 5.298 7 C 0.314 3.686 8 O -0.439 6.439 9 C -0.094 4.094 10 C -0.183 4.183 11 C -0.093 4.093 12 C -0.251 4.251 13 C -0.104 4.104 14 C -0.286 4.286 15 C 0.085 3.915 16 C -0.565 4.565 17 H 0.081 0.919 18 C -0.199 4.199 19 N -0.478 5.478 20 Si 0.920 3.080 21 H -0.180 1.180 22 H -0.206 1.206 23 H -0.215 1.215 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.265 0.735 34 H 0.150 0.850 35 H 0.117 0.883 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.650 13.555 3.107 15.415 hybrid contribution 0.984 1.341 1.359 2.148 sum -5.666 14.896 4.466 16.551 Atomic orbital electron populations 1.21812 0.94378 1.01181 1.02904 1.21130 0.96955 0.97096 0.95950 1.21740 1.01487 0.92632 1.03502 1.23375 1.00548 0.79981 1.00845 1.90588 1.76820 1.21551 1.29590 1.47602 1.59191 1.06191 1.16846 1.21587 0.78693 0.79368 0.88934 1.90680 1.41390 1.70636 1.41228 1.20266 1.03023 0.91215 0.94867 1.19438 0.97568 0.93683 1.07623 1.20933 0.94381 0.96170 0.97821 1.20905 1.02361 0.94259 1.07586 1.21027 0.93861 0.99467 0.96050 1.21321 1.01243 0.96108 1.09922 1.17795 0.91709 0.91524 0.90505 1.20521 1.06638 1.19435 1.09863 0.91875 1.27803 0.97598 0.97009 0.97451 1.70609 1.04453 1.30190 1.42559 0.83290 0.74209 0.76406 0.74116 1.17974 1.20590 1.21533 0.94756 0.91390 0.91165 0.91789 0.91862 0.90817 0.91051 0.90159 0.91293 0.73489 0.84969 0.88266 0.85292 0.85229 0.85741 0.88416 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.09 71.98 0.65 -2.24 16 2 C -0.09 -1.79 3.16 -10.79 -0.03 -1.83 16 3 C -0.14 -1.75 9.19 71.98 0.66 -1.08 16 4 C 0.03 0.64 5.61 71.98 0.40 1.04 16 5 O -0.18 -6.13 10.64 -21.37 -0.23 -6.36 16 6 N -0.59 -19.02 6.39 -173.52 -1.11 -20.13 16 7 C 0.53 21.66 7.97 87.66 0.70 22.36 16 8 O -0.56 -30.15 16.44 14.37 0.24 -29.91 16 9 C -0.05 -1.96 5.36 29.10 0.16 -1.81 16 10 C -0.18 -8.18 4.43 -19.40 -0.09 -8.27 16 11 C -0.08 -3.01 9.66 22.22 0.21 -2.80 16 12 C -0.23 -9.18 10.05 22.46 0.23 -8.95 16 13 C -0.09 -3.69 10.02 22.22 0.22 -3.47 16 14 C -0.27 -13.34 7.26 22.73 0.16 -13.17 16 15 C 0.09 4.55 5.13 -21.29 -0.11 4.44 16 16 C -0.53 -29.88 8.80 23.46 0.21 -29.67 16 17 H 0.06 3.53 6.60 -2.91 -0.02 3.51 16 18 C 0.01 0.83 5.42 85.26 0.46 1.29 16 19 N -0.85 -49.15 13.65 21.82 0.30 -48.86 16 20 Si 1.10 55.17 24.89 68.60 1.71 56.88 16 21 H -0.25 -11.57 6.45 99.48 0.64 -10.93 16 22 H -0.28 -15.01 7.01 99.48 0.70 -14.31 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H 0.03 0.89 7.82 -2.39 -0.02 0.87 16 25 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.42 9.21 8.54 -92.71 -0.79 8.42 16 34 H 0.13 3.40 8.06 -2.39 -0.02 3.38 16 35 H 0.10 3.58 6.51 -2.39 -0.02 3.56 16 36 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 37 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.10 4.91 4.43 -2.91 -0.01 4.90 16 40 H 0.28 15.57 8.73 -92.71 -0.81 14.76 16 Total: -1.00 -75.16 333.74 4.88 -70.28 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.13 Total: 22.25 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 3.84 Total: -44.15 kcal Atomic # 7 Polarization: -68.18 SS G_CDS: -0.81 Total: -68.99 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: 0.01 Total: -36.27 kcal Atomic # 14 Polarization: 55.17 SS G_CDS: 1.71 Total: 56.88 kcal Total: -75.16 4.88 -70.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319862191.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.116 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds