Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.53003 * 109.47286 * 239.99754 * 2 1 3 5 5 O 1.42907 * 109.46978 * 119.99862 * 2 1 3 6 6 N 1.41600 * 113.99999 * 59.99936 * 5 2 1 7 7 C 1.34771 * 119.99654 * 179.97438 * 6 5 2 8 8 O 1.21275 * 120.00380 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99694 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47125 * 180.02562 * 9 7 6 11 11 C 1.37640 * 120.12931 * 264.99856 * 10 9 7 12 12 C 1.38608 * 120.24877 * 179.97438 * 11 10 9 13 13 C 1.38654 * 120.50357 * 0.02562 * 12 11 10 14 14 C 1.37601 * 120.24831 * 0.02629 * 13 12 11 15 15 C 1.40696 * 120.12760 * 84.73009 * 10 9 7 16 16 C 1.41398 * 120.24431 * 359.97438 * 15 10 9 17 17 H 1.08003 * 120.00339 * 333.91158 * 16 15 10 18 18 C 1.39952 * 119.99773 * 153.90103 * 16 15 10 19 19 N 1.30816 * 119.99844 * 343.71763 * 18 16 15 20 20 Si 1.86796 * 119.99737 * 163.71668 * 18 16 15 21 21 H 1.48500 * 109.47359 * 90.00328 * 20 18 16 22 22 H 1.48502 * 109.46856 * 210.00291 * 20 18 16 23 23 H 1.48498 * 109.47103 * 330.00065 * 20 18 16 24 24 H 1.08993 * 109.47344 * 300.00008 * 1 2 3 25 25 H 1.08998 * 109.47063 * 60.00227 * 1 2 3 26 26 H 1.09002 * 109.46855 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46886 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46996 * 299.99814 * 3 2 1 29 29 H 1.09001 * 109.47644 * 59.99874 * 3 2 1 30 30 H 1.09003 * 109.46929 * 300.00278 * 4 2 1 31 31 H 1.08998 * 109.47054 * 60.00013 * 4 2 1 32 32 H 1.08995 * 109.46724 * 180.02562 * 4 2 1 33 33 H 0.97002 * 119.99575 * 0.02562 * 6 5 2 34 34 H 1.09002 * 109.46965 * 300.00231 * 9 7 6 35 35 H 1.08999 * 109.47412 * 60.00125 * 9 7 6 36 36 H 1.08007 * 119.87242 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.74457 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.87498 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.12872 * 179.97438 * 14 13 12 40 40 H 0.97004 * 120.00045 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1669 6 7 1.5885 -2.0231 1.2637 7 6 1.9693 -2.7724 2.3172 8 8 2.6694 -2.2908 3.1825 9 6 1.5251 -4.2088 2.4200 10 6 2.0818 -4.8178 3.6811 11 6 3.2596 -5.5290 3.6433 12 6 3.7741 -6.0897 4.8017 13 6 3.1104 -5.9421 6.0101 14 6 1.9309 -5.2361 6.0713 15 6 1.4025 -4.6567 4.9026 16 6 0.1950 -3.9229 4.9547 17 1 -0.0025 -3.1551 4.2212 18 6 -0.7443 -4.1915 5.9568 19 7 -0.6713 -5.3044 6.6404 20 14 -2.1024 -2.9608 6.3180 21 1 -3.2849 -3.2664 5.4733 22 1 -2.4817 -3.0487 7.7510 23 1 -1.6201 -1.5890 6.0169 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 1.0288 -2.4084 0.5714 34 1 0.4362 -4.2514 2.4464 35 1 1.8895 -4.7646 1.5561 36 1 3.7852 -5.6499 2.7075 37 1 4.6992 -6.6458 4.7628 38 1 3.5203 -6.3836 6.9065 39 1 1.4153 -5.1226 7.0135 40 1 -1.3221 -5.4905 7.3352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324978194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = -25.819950 kcal Electronic energy + Delta-G solvation = -21624.290468 eV Core-core repulsion = 18405.552489 eV Total energy + Delta-G solvation = -3218.737979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.28730 -38.20204 -37.01128 -33.78429 -33.59641 -31.96752 -30.64131 -29.41526 -27.60561 -27.55719 -26.53334 -24.91304 -21.00821 -20.84310 -20.49310 -19.28705 -17.42247 -17.07785 -16.35520 -15.45437 -15.20180 -14.84771 -14.51551 -14.42287 -13.98592 -13.56683 -13.40374 -13.10465 -12.78928 -12.55182 -12.52221 -12.08476 -11.99462 -11.94838 -11.73296 -11.55094 -11.17897 -11.05051 -10.97712 -10.94056 -10.67826 -10.62995 -10.37050 -9.46237 -9.35956 -9.18718 -9.12501 -8.42808 -7.29072 -7.27069 -6.71382 -4.31802 2.23927 2.84215 3.08392 3.10642 3.15513 3.30158 3.40349 3.96729 4.51073 4.57873 4.61833 4.69075 4.79115 5.29900 5.33383 5.41410 5.48796 5.58811 5.60271 5.73793 5.77908 5.86598 5.98410 6.02069 6.05641 6.10489 6.30724 6.40934 6.53985 6.80908 7.11218 7.24475 7.32543 7.44790 7.65924 7.81897 7.95833 8.09950 8.16105 8.33922 8.67677 8.93916 8.95963 9.03978 10.22611 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.005703 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.942835 B = 4908.438254 C = 6285.088012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.078 3.922 3 C -0.134 4.134 4 C -0.172 4.172 5 O -0.141 6.141 6 N -0.609 5.609 7 C 0.522 3.478 8 O -0.502 6.502 9 C -0.055 4.055 10 C -0.186 4.186 11 C -0.078 4.078 12 C -0.240 4.240 13 C -0.106 4.106 14 C -0.158 4.158 15 C 0.131 3.869 16 C -0.456 4.456 17 H 0.075 0.925 18 C 0.077 3.923 19 N -0.794 5.794 20 Si 0.901 3.099 21 H -0.270 1.270 22 H -0.276 1.276 23 H -0.261 1.261 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.398 0.602 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 6.769 -13.438 15.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.038 3.962 3 C -0.192 4.192 4 C -0.230 4.230 5 O -0.145 6.145 6 N -0.315 5.315 7 C 0.310 3.690 8 O -0.373 6.373 9 C -0.096 4.096 10 C -0.188 4.188 11 C -0.096 4.096 12 C -0.259 4.259 13 C -0.124 4.124 14 C -0.178 4.178 15 C 0.128 3.872 16 C -0.485 4.485 17 H 0.093 0.907 18 C -0.140 4.140 19 N -0.420 5.420 20 Si 0.726 3.274 21 H -0.195 1.195 22 H -0.201 1.201 23 H -0.185 1.185 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.238 0.762 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.135 0.865 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.531 7.086 -12.436 14.323 hybrid contribution -1.060 0.465 -0.377 1.218 sum -1.591 7.552 -12.813 14.958 Atomic orbital electron populations 1.22380 0.94875 1.02823 1.03039 1.21968 0.94253 0.93602 0.86407 1.21730 1.02241 0.92366 1.02909 1.22371 1.02478 1.00751 0.97370 1.90657 1.71666 1.10033 1.42178 1.48031 1.55969 1.00541 1.26943 1.21633 0.80159 0.87744 0.79463 1.90702 1.36035 1.72421 1.38150 1.20201 1.02810 0.88179 0.98361 1.18993 0.99736 1.07355 0.92715 1.20306 0.94896 0.98068 0.96332 1.20303 1.01757 1.10143 0.93707 1.20688 0.96135 0.99652 0.95937 1.21300 0.95388 1.02263 0.98813 1.17336 0.91233 0.88880 0.89720 1.19490 1.00784 1.17132 1.11125 0.90724 1.25874 0.98841 0.94756 0.94528 1.69816 1.33221 1.20952 1.17979 0.86419 0.80527 0.82103 0.78375 1.19547 1.20054 1.18465 0.91311 0.91409 0.92143 0.91485 0.90596 0.91389 0.92235 0.91391 0.91467 0.76184 0.88208 0.90184 0.89636 0.89599 0.89532 0.86471 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 8.51 37.16 0.32 -1.43 16 2 C 0.08 0.89 1.13 -90.62 -0.10 0.79 16 3 C -0.13 -1.30 8.84 37.16 0.33 -0.97 16 4 C -0.17 -1.60 8.51 37.16 0.32 -1.29 16 5 O -0.14 -2.37 10.63 -29.66 -0.32 -2.69 16 6 N -0.61 -9.95 5.59 31.22 0.17 -9.77 16 7 C 0.52 10.82 7.58 -10.99 -0.08 10.74 16 8 O -0.50 -13.09 16.44 -12.63 -0.21 -13.30 16 9 C -0.06 -1.08 5.18 -29.03 -0.15 -1.23 16 10 C -0.19 -4.51 4.43 -103.91 -0.46 -4.97 16 11 C -0.08 -1.81 9.66 -39.66 -0.38 -2.19 16 12 C -0.24 -5.63 10.05 -39.29 -0.39 -6.03 16 13 C -0.11 -2.60 10.02 -39.66 -0.40 -3.00 16 14 C -0.16 -4.27 8.69 -38.87 -0.34 -4.61 16 15 C 0.13 3.53 5.56 -106.82 -0.59 2.94 16 16 C -0.46 -12.11 8.14 -37.74 -0.31 -12.42 16 17 H 0.07 1.94 6.67 -52.48 -0.35 1.59 16 18 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 19 N -0.79 -20.55 10.95 55.55 0.61 -19.94 16 20 Si 0.90 19.07 29.59 -169.99 -5.03 14.04 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.59 6.96 -51.93 -0.36 0.23 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.53 6.96 -51.93 -0.36 0.17 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.40 4.91 6.42 -40.82 -0.26 4.65 16 34 H 0.10 1.87 7.08 -51.93 -0.37 1.50 16 35 H 0.08 1.26 8.05 -51.93 -0.42 0.85 16 36 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.12 3.24 6.20 -52.49 -0.33 2.92 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -32.51 333.83 -7.89 -40.39 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.81 Total: 8.05 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -2.34 Total: -21.81 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.78 Total: -29.71 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.52 Total: -15.99 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.51 -7.89 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324978194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.572 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds