Wall clock time and date at job start Mon Mar 30 2020 02:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47062 * 2 1 4 4 C 1.53003 * 109.47286 * 239.99754 * 2 1 3 5 5 O 1.42907 * 109.46978 * 119.99862 * 2 1 3 6 6 N 1.41600 * 113.99999 * 59.99936 * 5 2 1 7 7 C 1.34771 * 119.99654 * 179.97438 * 6 5 2 8 8 O 1.21275 * 120.00380 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99694 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47125 * 180.02562 * 9 7 6 11 11 C 1.37640 * 120.12931 * 264.99856 * 10 9 7 12 12 C 1.38608 * 120.24877 * 179.97438 * 11 10 9 13 13 C 1.38654 * 120.50357 * 0.02562 * 12 11 10 14 14 C 1.37601 * 120.24831 * 0.02629 * 13 12 11 15 15 C 1.40696 * 120.12760 * 84.73009 * 10 9 7 16 16 C 1.41398 * 120.24431 * 359.97438 * 15 10 9 17 17 H 1.08003 * 120.00339 * 333.91158 * 16 15 10 18 18 C 1.39952 * 119.99773 * 153.90103 * 16 15 10 19 19 N 1.30816 * 119.99844 * 343.71763 * 18 16 15 20 20 Si 1.86796 * 119.99737 * 163.71668 * 18 16 15 21 21 H 1.48500 * 109.47359 * 90.00328 * 20 18 16 22 22 H 1.48502 * 109.46856 * 210.00291 * 20 18 16 23 23 H 1.48498 * 109.47103 * 330.00065 * 20 18 16 24 24 H 1.08993 * 109.47344 * 300.00008 * 1 2 3 25 25 H 1.08998 * 109.47063 * 60.00227 * 1 2 3 26 26 H 1.09002 * 109.46855 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46886 * 180.02562 * 3 2 1 28 28 H 1.08998 * 109.46996 * 299.99814 * 3 2 1 29 29 H 1.09001 * 109.47644 * 59.99874 * 3 2 1 30 30 H 1.09003 * 109.46929 * 300.00278 * 4 2 1 31 31 H 1.08998 * 109.47054 * 60.00013 * 4 2 1 32 32 H 1.08995 * 109.46724 * 180.02562 * 4 2 1 33 33 H 0.97002 * 119.99575 * 0.02562 * 6 5 2 34 34 H 1.09002 * 109.46965 * 300.00231 * 9 7 6 35 35 H 1.08999 * 109.47412 * 60.00125 * 9 7 6 36 36 H 1.08007 * 119.87242 * 0.02562 * 11 10 9 37 37 H 1.08002 * 119.74457 * 180.02562 * 12 11 10 38 38 H 1.07998 * 119.87498 * 179.97438 * 13 12 11 39 39 H 1.08001 * 120.12872 * 179.97438 * 14 13 12 40 40 H 0.97004 * 120.00045 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1669 6 7 1.5885 -2.0231 1.2637 7 6 1.9693 -2.7724 2.3172 8 8 2.6694 -2.2908 3.1825 9 6 1.5251 -4.2088 2.4200 10 6 2.0818 -4.8178 3.6811 11 6 3.2596 -5.5290 3.6433 12 6 3.7741 -6.0897 4.8017 13 6 3.1104 -5.9421 6.0101 14 6 1.9309 -5.2361 6.0713 15 6 1.4025 -4.6567 4.9026 16 6 0.1950 -3.9229 4.9547 17 1 -0.0025 -3.1551 4.2212 18 6 -0.7443 -4.1915 5.9568 19 7 -0.6713 -5.3044 6.6404 20 14 -2.1024 -2.9608 6.3180 21 1 -3.2849 -3.2664 5.4733 22 1 -2.4817 -3.0487 7.7510 23 1 -1.6201 -1.5890 6.0169 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6768 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2489 33 1 1.0288 -2.4084 0.5714 34 1 0.4362 -4.2514 2.4464 35 1 1.8895 -4.7646 1.5561 36 1 3.7852 -5.6499 2.7075 37 1 4.6992 -6.6458 4.7628 38 1 3.5203 -6.3836 6.9065 39 1 1.4153 -5.1226 7.0135 40 1 -1.3221 -5.4905 7.3352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324978194.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:46 Heat of formation + Delta-G solvation = -44.542690 kcal Electronic energy + Delta-G solvation = -21625.102347 eV Core-core repulsion = 18405.552489 eV Total energy + Delta-G solvation = -3219.549858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75711 -39.60065 -38.70032 -35.49631 -34.96856 -33.62641 -32.12279 -31.31361 -28.57023 -28.30982 -28.08548 -26.78576 -22.83285 -22.49961 -21.63582 -20.94002 -19.07476 -18.46275 -17.87077 -17.25507 -16.51764 -16.27839 -15.96589 -15.79557 -15.46261 -14.98820 -14.83565 -14.58828 -14.36723 -13.86267 -13.55614 -13.37322 -13.23582 -12.91011 -12.89842 -12.87229 -12.75130 -12.72752 -12.65236 -12.49977 -12.13204 -11.81117 -11.67379 -11.31751 -11.21805 -11.01264 -10.88602 -9.79949 -9.21278 -9.17005 -8.59321 -6.28959 0.81897 1.07580 1.32124 1.35689 1.46784 1.54181 1.81189 2.20287 2.78839 3.50237 3.72035 3.79026 3.81414 3.98140 4.06506 4.39027 4.42416 4.60213 4.61281 4.64134 4.72627 4.73097 4.78713 4.83779 4.86084 4.88718 5.05194 5.12453 5.20355 5.26144 5.29096 5.38032 5.55742 5.77755 5.94941 6.04598 6.17621 6.22777 6.42448 6.50091 6.74940 6.99619 7.11855 7.47946 8.37037 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.005703 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.942835 B = 4908.438254 C = 6285.088012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.065 3.935 3 C -0.133 4.133 4 C -0.168 4.168 5 O -0.175 6.175 6 N -0.588 5.588 7 C 0.525 3.475 8 O -0.567 6.567 9 C -0.053 4.053 10 C -0.193 4.193 11 C -0.087 4.087 12 C -0.243 4.243 13 C -0.116 4.116 14 C -0.194 4.194 15 C 0.097 3.903 16 C -0.483 4.483 17 H 0.070 0.930 18 C 0.038 3.962 19 N -0.823 5.823 20 Si 0.968 3.032 21 H -0.252 1.252 22 H -0.267 1.267 23 H -0.272 1.272 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.419 0.581 34 H 0.106 0.894 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 7.179 -16.121 17.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.026 3.974 3 C -0.192 4.192 4 C -0.226 4.226 5 O -0.180 6.180 6 N -0.293 5.293 7 C 0.314 3.686 8 O -0.443 6.443 9 C -0.093 4.093 10 C -0.195 4.195 11 C -0.105 4.105 12 C -0.262 4.262 13 C -0.134 4.134 14 C -0.213 4.213 15 C 0.095 3.905 16 C -0.513 4.513 17 H 0.088 0.912 18 C -0.177 4.177 19 N -0.450 5.450 20 Si 0.790 3.210 21 H -0.176 1.176 22 H -0.192 1.192 23 H -0.197 1.197 24 H 0.069 0.931 25 H 0.117 0.883 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.263 0.737 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.115 0.885 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.151 7.479 -15.188 16.969 hybrid contribution -0.793 0.366 0.335 0.935 sum -1.943 7.845 -14.853 16.909 Atomic orbital electron populations 1.22385 0.93716 1.03151 1.03706 1.22425 0.95325 0.94080 0.85607 1.21809 1.01930 0.91464 1.03966 1.22354 1.01902 1.01100 0.97224 1.90657 1.72512 1.09563 1.45256 1.47529 1.54706 1.00869 1.26152 1.21644 0.79342 0.88277 0.79379 1.90676 1.39213 1.73775 1.40685 1.20225 1.03066 0.87994 0.97966 1.19490 0.99744 1.06638 0.93648 1.20770 0.94687 0.97268 0.97818 1.20729 1.02539 1.09671 0.93278 1.20968 0.95586 0.99301 0.97554 1.21309 0.96883 1.04714 0.98425 1.17738 0.92153 0.89687 0.90906 1.19623 1.01561 1.17717 1.12385 0.91170 1.26627 1.00884 0.96180 0.93963 1.69871 1.34314 1.22288 1.18499 0.85413 0.78076 0.78777 0.78755 1.17638 1.19158 1.19654 0.93066 0.88350 0.91991 0.92094 0.87217 0.92608 0.91822 0.88505 0.92398 0.73736 0.87572 0.85745 0.86190 0.86572 0.87635 0.88501 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.51 71.98 0.61 -2.43 16 2 C 0.06 1.35 1.13 -10.79 -0.01 1.34 16 3 C -0.13 -2.35 8.84 71.98 0.64 -1.71 16 4 C -0.17 -2.63 8.51 71.98 0.61 -2.02 16 5 O -0.17 -5.75 10.63 -21.39 -0.23 -5.98 16 6 N -0.59 -18.48 5.59 -173.54 -0.97 -19.45 16 7 C 0.52 21.53 7.58 87.66 0.66 22.20 16 8 O -0.57 -30.19 16.44 14.38 0.24 -29.95 16 9 C -0.05 -1.99 5.18 29.10 0.15 -1.84 16 10 C -0.19 -9.35 4.43 -19.41 -0.09 -9.43 16 11 C -0.09 -3.94 9.66 22.22 0.21 -3.72 16 12 C -0.24 -11.14 10.05 22.46 0.23 -10.91 16 13 C -0.12 -5.77 10.02 22.22 0.22 -5.54 16 14 C -0.19 -10.86 8.69 22.73 0.20 -10.66 16 15 C 0.10 5.41 5.56 -21.29 -0.12 5.29 16 16 C -0.48 -26.47 8.14 23.46 0.19 -26.28 16 17 H 0.07 3.76 6.67 -2.91 -0.02 3.74 16 18 C 0.04 1.97 5.16 85.26 0.44 2.41 16 19 N -0.82 -43.87 10.95 21.83 0.24 -43.63 16 20 Si 0.97 39.72 29.59 68.60 2.03 41.75 16 21 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 22 H -0.27 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 1.06 6.96 -2.39 -0.02 1.04 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 0.93 6.96 -2.39 -0.02 0.91 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.42 9.37 6.42 -92.71 -0.60 8.78 16 34 H 0.11 3.88 7.08 -2.39 -0.02 3.86 16 35 H 0.12 3.52 8.05 -2.39 -0.02 3.50 16 36 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 37 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 38 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 39 H 0.10 5.67 6.20 -2.91 -0.02 5.66 16 40 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 Total: -1.00 -74.07 333.83 5.70 -68.37 By element: Atomic # 1 Polarization: 31.79 SS G_CDS: 0.44 Total: 32.23 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 3.95 Total: -43.32 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.73 Total: -63.08 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: 0.01 Total: -35.94 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -74.07 5.70 -68.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324978194.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.823 kcal (2) G-P(sol) polarization free energy of solvation -74.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds