Wall clock time and date at job start Mon Mar 30 2020 02:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47333 * 2 1 4 4 O 1.42906 * 109.47039 * 119.99848 * 2 1 3 5 5 C 1.35901 * 116.99494 * 59.22069 * 4 2 1 6 6 C 1.38736 * 120.04994 * 185.95079 * 5 4 2 7 7 C 1.38153 * 119.94163 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.05218 * 359.97106 * 7 6 5 9 9 C 1.38265 * 120.11812 * 0.04632 * 8 7 6 10 10 C 1.38146 * 120.05264 * 359.95958 * 9 8 7 11 11 C 1.50693 * 109.47196 * 239.99657 * 2 1 3 12 12 O 1.21282 * 120.00210 * 240.00616 * 11 2 1 13 13 N 1.34783 * 120.00181 * 60.00102 * 11 2 1 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 2 15 15 C 1.52993 * 109.47127 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47277 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00457 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99554 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47241 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47076 * 120.00766 * 20 18 16 23 23 H 1.48508 * 109.47001 * 240.00044 * 20 18 16 24 24 H 1.09003 * 109.46911 * 311.38979 * 1 2 3 25 25 H 1.08999 * 109.46643 * 71.37989 * 1 2 3 26 26 H 1.08996 * 109.47677 * 191.38176 * 1 2 3 27 27 H 1.08996 * 109.46796 * 175.27041 * 3 2 1 28 28 H 1.08996 * 109.46847 * 295.27296 * 3 2 1 29 29 H 1.08999 * 109.47129 * 55.27341 * 3 2 1 30 30 H 1.08001 * 120.02828 * 359.69660 * 6 5 4 31 31 H 1.08000 * 119.97019 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.93800 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.97386 * 179.97438 * 9 8 7 34 34 H 1.07999 * 120.02946 * 180.02562 * 10 9 8 35 35 H 0.97007 * 119.99516 * 0.02562 * 13 11 2 36 36 H 1.09004 * 109.46897 * 300.00060 * 14 13 11 37 37 H 1.08997 * 109.47106 * 60.00068 * 14 13 11 38 38 H 1.09004 * 109.46875 * 299.99576 * 15 14 13 39 39 H 1.08997 * 109.47478 * 59.99799 * 15 14 13 40 40 H 0.97006 * 120.00075 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 1.6277 -1.9687 1.3292 6 6 1.9496 -2.6454 2.4968 7 6 1.5631 -3.9618 2.6597 8 6 0.8556 -4.6044 1.6607 9 6 0.5339 -3.9323 0.4960 10 6 0.9181 -2.6160 0.3282 11 6 2.0323 -0.7104 -1.2304 12 8 2.7295 -1.6966 -1.1191 13 7 1.7068 -0.2501 -2.4546 14 6 2.1946 -0.9410 -3.6507 15 6 1.6853 -0.2194 -4.8999 16 6 2.1876 -0.9298 -6.1304 17 1 2.8085 -1.8079 -6.0312 18 6 1.8547 -0.4587 -7.3827 19 7 1.0991 0.6109 -7.5033 20 14 2.4768 -1.3398 -8.9078 21 1 3.3018 -2.5064 -8.5036 22 1 1.3216 -1.8059 -9.7161 23 1 3.3023 -0.4068 -9.7163 24 1 -0.3633 0.6795 0.7710 25 1 -0.3632 0.3281 -0.9739 26 1 -0.3634 -1.0074 0.2028 27 1 3.1267 1.4436 0.0847 28 1 1.7475 1.9313 -0.9293 29 1 1.6093 1.9802 0.8446 30 1 2.5058 -2.1450 3.2757 31 1 1.8139 -4.4891 3.5683 32 1 0.5541 -5.6333 1.7902 33 1 -0.0185 -4.4367 -0.2830 34 1 0.6663 -2.0912 -0.5815 35 1 1.1494 0.5389 -2.5436 36 1 3.2847 -0.9415 -3.6508 37 1 1.8309 -1.9685 -3.6505 38 1 0.5953 -0.2186 -4.9000 39 1 2.0494 0.8080 -4.8999 40 1 0.8651 0.9425 -8.3844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342263109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:11 Heat of formation + Delta-G solvation = -47.197695 kcal Electronic energy + Delta-G solvation = -21655.521884 eV Core-core repulsion = 18435.856897 eV Total energy + Delta-G solvation = -3219.664987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.27516 -38.76401 -37.27968 -35.02678 -33.76333 -32.64851 -30.91877 -29.87416 -29.42087 -27.51464 -25.16462 -23.68343 -22.37111 -22.24019 -21.01386 -19.88031 -18.25893 -16.76184 -16.64459 -16.26105 -15.78350 -15.22649 -14.99991 -14.64452 -14.41863 -14.05753 -13.89931 -13.49898 -13.40959 -12.92341 -12.70114 -12.38172 -12.36478 -12.32021 -12.17589 -11.93146 -11.51356 -11.25729 -11.11792 -10.92461 -10.75563 -10.66897 -10.38495 -9.84521 -9.50405 -9.23952 -8.87764 -8.61898 -8.43379 -7.97921 -6.14418 -4.17339 1.44352 1.54362 2.73031 3.06912 3.25258 3.32750 3.36543 3.43633 3.88418 4.37329 4.53809 4.64197 4.76451 4.95085 4.96068 5.16746 5.23007 5.29439 5.32646 5.41669 5.46469 5.51241 5.59441 5.74991 5.86409 5.93221 6.06577 6.23538 6.25961 6.38713 6.49800 6.60617 6.64841 6.75950 6.82338 7.39013 7.45558 7.53963 7.82201 7.84863 8.20996 8.45728 8.88631 9.47988 10.97143 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.003907 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.307602 B = 7164.388089 C = 7872.234617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.095 3.905 3 C -0.136 4.136 4 O -0.290 6.290 5 C 0.142 3.858 6 C -0.156 4.156 7 C -0.091 4.091 8 C -0.161 4.161 9 C -0.088 4.088 10 C -0.177 4.177 11 C 0.482 3.518 12 O -0.526 6.526 13 N -0.715 5.715 14 C 0.121 3.879 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.397 0.603 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -1.350 18.773 19.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.053 3.947 3 C -0.193 4.193 4 O -0.203 6.203 5 C 0.097 3.903 6 C -0.175 4.175 7 C -0.109 4.109 8 C -0.179 4.179 9 C -0.106 4.106 10 C -0.195 4.195 11 C 0.266 3.734 12 O -0.403 6.403 13 N -0.367 5.367 14 C -0.001 4.001 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.097 0.903 25 H 0.100 0.900 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.232 0.768 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.631 -1.832 18.825 19.096 hybrid contribution -0.019 -0.081 -1.300 1.303 sum -2.650 -1.913 17.525 17.827 Atomic orbital electron populations 1.22800 0.92788 1.05129 1.04399 1.21817 0.95172 0.93657 0.84014 1.21810 1.03098 0.90519 1.03916 1.86143 1.70371 1.22418 1.41331 1.18828 0.93963 0.83548 0.93966 1.20338 1.05427 0.95132 0.96621 1.20850 0.97511 0.93610 0.98890 1.20987 1.02139 1.00073 0.94698 1.20956 0.98602 0.93815 0.97219 1.21528 1.02478 0.96717 0.98822 1.20928 0.81706 0.85403 0.85389 1.90790 1.37576 1.25582 1.86351 1.46400 1.52586 1.31701 1.06014 1.21778 0.98715 0.96275 0.83339 1.19327 0.96940 0.96076 0.90113 1.21075 1.31990 1.12609 0.90394 0.92201 1.24990 0.94955 0.95003 0.99281 1.69958 1.36672 1.22903 1.23712 0.86459 0.78697 0.79747 0.82700 1.19571 1.20892 1.20892 0.90269 0.90042 0.89815 0.90755 0.89592 0.90368 0.85605 0.85771 0.86293 0.86075 0.85294 0.76834 0.92391 0.92451 0.95917 0.95881 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 8.14 37.16 0.30 -1.80 16 2 C 0.10 1.26 0.96 -91.77 -0.09 1.18 16 3 C -0.14 -1.42 8.77 37.16 0.33 -1.10 16 4 O -0.29 -4.37 9.63 -39.34 -0.38 -4.75 16 5 C 0.14 2.17 5.53 -39.22 -0.22 1.95 16 6 C -0.16 -2.09 9.99 -39.43 -0.39 -2.48 16 7 C -0.09 -1.06 10.04 -39.60 -0.40 -1.46 16 8 C -0.16 -1.95 10.04 -39.56 -0.40 -2.35 16 9 C -0.09 -1.21 10.04 -39.61 -0.40 -1.61 16 10 C -0.18 -2.73 5.52 -39.43 -0.22 -2.95 16 11 C 0.48 8.11 4.56 -10.99 -0.05 8.06 16 12 O -0.53 -10.93 13.79 -14.35 -0.20 -11.13 16 13 N -0.72 -11.93 5.23 -60.30 -0.32 -12.24 16 14 C 0.12 2.50 5.61 -4.05 -0.02 2.48 16 15 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 16 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 20 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H 0.08 0.70 8.07 -51.93 -0.42 0.28 16 25 H 0.08 0.79 7.28 -51.93 -0.38 0.41 16 26 H 0.08 0.99 4.85 -51.93 -0.25 0.74 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.78 7.43 -51.93 -0.39 0.39 16 29 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 30 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.13 2.07 3.84 -52.49 -0.20 1.87 16 35 H 0.40 5.61 7.17 -40.82 -0.29 5.31 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 327.39 15.07 4.93 4.93 Total: -1.00 -32.17 327.39 -8.05 -40.21 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.70 Total: 4.69 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -2.11 Total: -12.92 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.42 Total: -37.17 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.58 Total: -15.88 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.17 -8.05 -40.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342263109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.983 kcal (2) G-P(sol) polarization free energy of solvation -32.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds