Wall clock time and date at job start Mon Mar 30 2020 02:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.47333 * 2 1 4 4 O 1.42906 * 109.47039 * 119.99848 * 2 1 3 5 5 C 1.35901 * 116.99494 * 59.22069 * 4 2 1 6 6 C 1.38736 * 120.04994 * 185.95079 * 5 4 2 7 7 C 1.38153 * 119.94163 * 179.97438 * 6 5 4 8 8 C 1.38262 * 120.05218 * 359.97106 * 7 6 5 9 9 C 1.38265 * 120.11812 * 0.04632 * 8 7 6 10 10 C 1.38146 * 120.05264 * 359.95958 * 9 8 7 11 11 C 1.50693 * 109.47196 * 239.99657 * 2 1 3 12 12 O 1.21282 * 120.00210 * 240.00616 * 11 2 1 13 13 N 1.34783 * 120.00181 * 60.00102 * 11 2 1 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 2 15 15 C 1.52993 * 109.47127 * 180.02562 * 14 13 11 16 16 C 1.50697 * 109.47277 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00457 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99554 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47241 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47076 * 120.00766 * 20 18 16 23 23 H 1.48508 * 109.47001 * 240.00044 * 20 18 16 24 24 H 1.09003 * 109.46911 * 311.38979 * 1 2 3 25 25 H 1.08999 * 109.46643 * 71.37989 * 1 2 3 26 26 H 1.08996 * 109.47677 * 191.38176 * 1 2 3 27 27 H 1.08996 * 109.46796 * 175.27041 * 3 2 1 28 28 H 1.08996 * 109.46847 * 295.27296 * 3 2 1 29 29 H 1.08999 * 109.47129 * 55.27341 * 3 2 1 30 30 H 1.08001 * 120.02828 * 359.69660 * 6 5 4 31 31 H 1.08000 * 119.97019 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.93800 * 180.02562 * 8 7 6 33 33 H 1.08002 * 119.97386 * 179.97438 * 9 8 7 34 34 H 1.07999 * 120.02946 * 180.02562 * 10 9 8 35 35 H 0.97007 * 119.99516 * 0.02562 * 13 11 2 36 36 H 1.09004 * 109.46897 * 300.00060 * 14 13 11 37 37 H 1.08997 * 109.47106 * 60.00068 * 14 13 11 38 38 H 1.09004 * 109.46875 * 299.99576 * 15 14 13 39 39 H 1.08997 * 109.47478 * 59.99799 * 15 14 13 40 40 H 0.97006 * 120.00075 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 1.6277 -1.9687 1.3292 6 6 1.9496 -2.6454 2.4968 7 6 1.5631 -3.9618 2.6597 8 6 0.8556 -4.6044 1.6607 9 6 0.5339 -3.9323 0.4960 10 6 0.9181 -2.6160 0.3282 11 6 2.0323 -0.7104 -1.2304 12 8 2.7295 -1.6966 -1.1191 13 7 1.7068 -0.2501 -2.4546 14 6 2.1946 -0.9410 -3.6507 15 6 1.6853 -0.2194 -4.8999 16 6 2.1876 -0.9298 -6.1304 17 1 2.8085 -1.8079 -6.0312 18 6 1.8547 -0.4587 -7.3827 19 7 1.0991 0.6109 -7.5033 20 14 2.4768 -1.3398 -8.9078 21 1 3.3018 -2.5064 -8.5036 22 1 1.3216 -1.8059 -9.7161 23 1 3.3023 -0.4068 -9.7163 24 1 -0.3633 0.6795 0.7710 25 1 -0.3632 0.3281 -0.9739 26 1 -0.3634 -1.0074 0.2028 27 1 3.1267 1.4436 0.0847 28 1 1.7475 1.9313 -0.9293 29 1 1.6093 1.9802 0.8446 30 1 2.5058 -2.1450 3.2757 31 1 1.8139 -4.4891 3.5683 32 1 0.5541 -5.6333 1.7902 33 1 -0.0185 -4.4367 -0.2830 34 1 0.6663 -2.0912 -0.5815 35 1 1.1494 0.5389 -2.5436 36 1 3.2847 -0.9415 -3.6508 37 1 1.8309 -1.9685 -3.6505 38 1 0.5953 -0.2186 -4.9000 39 1 2.0494 0.8080 -4.8999 40 1 0.8651 0.9425 -8.3844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342263109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:10 Heat of formation + Delta-G solvation = -66.633758 kcal Electronic energy + Delta-G solvation = -21656.364695 eV Core-core repulsion = 18435.856897 eV Total energy + Delta-G solvation = -3220.507798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.43190 -39.98536 -38.38183 -36.66956 -35.21418 -34.27051 -31.94021 -31.37478 -30.71526 -28.36979 -26.99463 -24.89736 -23.57776 -23.37082 -22.68926 -21.10769 -19.49202 -18.55301 -17.82903 -17.57584 -16.93246 -16.53336 -16.47247 -16.32609 -15.71196 -15.38637 -14.99234 -14.88312 -14.47540 -14.28990 -13.98834 -13.66457 -13.42622 -13.26391 -13.20096 -13.12397 -12.98614 -12.90855 -12.56478 -12.48391 -12.29730 -11.89146 -11.74945 -11.69162 -11.45401 -10.76770 -10.62842 -10.15336 -9.82456 -9.04923 -8.26220 -6.36356 0.43000 0.52468 1.39282 1.40897 1.41689 1.53401 1.95997 2.15130 2.40991 2.86923 3.08822 3.52219 3.61175 3.68396 3.95319 3.97419 4.26367 4.36101 4.42365 4.43585 4.50799 4.53830 4.57592 4.67266 4.70950 4.80222 4.83253 5.03564 5.08212 5.10892 5.19650 5.39429 5.44124 5.50427 5.55169 5.61398 5.75507 5.84583 6.13614 6.31786 6.50779 6.76399 7.10721 7.33091 8.85574 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.003907 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.307602 B = 7164.388089 C = 7872.234617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.099 3.901 3 C -0.136 4.136 4 O -0.300 6.300 5 C 0.118 3.882 6 C -0.167 4.167 7 C -0.087 4.087 8 C -0.160 4.160 9 C -0.106 4.106 10 C -0.196 4.196 11 C 0.482 3.518 12 O -0.569 6.569 13 N -0.707 5.707 14 C 0.141 3.859 15 C 0.024 3.976 16 C -0.547 4.547 17 H 0.056 0.944 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.142 0.858 31 H 0.160 0.840 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.114 0.886 35 H 0.411 0.589 36 H 0.044 0.956 37 H 0.045 0.955 38 H 0.012 0.988 39 H 0.012 0.988 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.462 -1.596 19.855 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.057 3.943 3 C -0.192 4.192 4 O -0.213 6.213 5 C 0.073 3.927 6 C -0.185 4.185 7 C -0.104 4.104 8 C -0.178 4.178 9 C -0.124 4.124 10 C -0.215 4.215 11 C 0.269 3.731 12 O -0.448 6.448 13 N -0.360 5.360 14 C 0.018 3.982 15 C -0.013 4.013 16 C -0.586 4.586 17 H 0.074 0.926 18 C -0.189 4.189 19 N -0.563 5.563 20 Si 0.787 3.213 21 H -0.192 1.192 22 H -0.201 1.201 23 H -0.202 1.202 24 H 0.123 0.877 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.118 0.882 29 H 0.124 0.876 30 H 0.159 0.841 31 H 0.177 0.823 32 H 0.165 0.835 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.030 0.970 39 H 0.030 0.970 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.921 -2.054 19.923 20.240 hybrid contribution 0.058 -0.041 -1.582 1.584 sum -2.863 -2.095 18.340 18.680 Atomic orbital electron populations 1.22800 0.90759 1.05209 1.05894 1.22006 0.96642 0.94137 0.81499 1.21918 1.02587 0.88812 1.05931 1.86124 1.70947 1.22595 1.41680 1.19129 0.94847 0.83891 0.94841 1.20712 1.05431 0.95954 0.96428 1.21298 0.96168 0.93048 0.99920 1.21361 1.01300 1.01277 0.93887 1.21218 0.99143 0.93581 0.98470 1.21519 1.03735 0.97588 0.98665 1.21681 0.80544 0.84768 0.86137 1.90760 1.39536 1.27541 1.86987 1.46158 1.52758 1.31973 1.05103 1.21243 0.97657 0.95547 0.83768 1.19126 0.95989 0.95411 0.90802 1.21471 1.32259 1.12897 0.91964 0.92602 1.25817 0.95037 0.95704 1.02334 1.70047 1.37530 1.24066 1.24697 0.85434 0.78323 0.78676 0.78851 1.19200 1.20132 1.20172 0.87658 0.89068 0.91002 0.91785 0.88181 0.87609 0.84065 0.82273 0.83484 0.85351 0.86794 0.75164 0.93727 0.93665 0.97015 0.97011 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.88 8.14 71.98 0.59 -3.29 16 2 C 0.10 2.56 0.96 -11.54 -0.01 2.54 16 3 C -0.14 -2.60 8.77 71.98 0.63 -1.97 16 4 O -0.30 -8.94 9.63 -73.40 -0.71 -9.64 16 5 C 0.12 3.58 5.53 22.51 0.12 3.70 16 6 C -0.17 -4.24 9.99 22.37 0.22 -4.02 16 7 C -0.09 -1.84 10.04 22.26 0.22 -1.61 16 8 C -0.16 -3.60 10.04 22.28 0.22 -3.37 16 9 C -0.11 -2.91 10.04 22.25 0.22 -2.68 16 10 C -0.20 -6.16 5.52 22.37 0.12 -6.03 16 11 C 0.48 16.46 4.56 87.65 0.40 16.86 16 12 O -0.57 -24.38 13.79 16.00 0.22 -24.16 16 13 N -0.71 -23.87 5.23 -463.07 -2.42 -26.29 16 14 C 0.14 6.02 5.61 86.38 0.48 6.51 16 15 C 0.02 1.19 5.09 29.84 0.15 1.34 16 16 C -0.55 -30.32 9.11 25.60 0.23 -30.08 16 17 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 18 C 0.01 0.56 5.46 84.66 0.46 1.02 16 19 N -0.92 -53.23 13.29 21.45 0.28 -52.94 16 20 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H 0.10 1.60 8.07 -2.39 -0.02 1.58 16 25 H 0.09 1.65 7.28 -2.39 -0.02 1.63 16 26 H 0.07 1.68 4.85 -2.39 -0.01 1.67 16 27 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.10 1.62 7.43 -2.39 -0.02 1.60 16 29 H 0.11 1.46 8.11 -2.39 -0.02 1.44 16 30 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 33 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.11 3.79 3.84 -2.91 -0.01 3.78 16 35 H 0.41 11.48 7.17 -92.70 -0.66 10.82 16 36 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.04 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 39 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -70.11 327.39 3.86 -66.25 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.38 Total: 22.55 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.08 Total: -21.08 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.13 Total: -79.24 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.49 Total: -33.80 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -70.11 3.86 -66.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342263109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.387 kcal (2) G-P(sol) polarization free energy of solvation -70.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds