Wall clock time and date at job start Mon Mar 30 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99610 * 2 1 4 4 C 1.50700 * 120.00204 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.46733 * 95.00139 * 4 2 1 6 6 C 1.50702 * 109.47266 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99578 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00755 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46897 * 89.99800 * 14 12 10 16 16 H 1.48496 * 109.47501 * 210.00050 * 14 12 10 17 17 H 1.48501 * 109.46824 * 330.00136 * 14 12 10 18 18 C 1.46505 * 119.99455 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 1.07991 * 120.00362 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00015 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46768 * 239.99297 * 3 2 1 27 27 H 1.09000 * 109.47406 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.46919 * 120.00206 * 3 2 1 29 29 H 1.09006 * 109.47040 * 335.00684 * 4 2 1 30 30 H 1.09002 * 109.47098 * 215.00411 * 4 2 1 31 31 H 1.09004 * 109.47424 * 60.00476 * 5 4 2 32 32 H 1.09002 * 109.47551 * 299.99995 * 5 4 2 33 33 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 34 34 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 35 35 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 37 37 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 38 38 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 39 39 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4274 -1.6844 -1.4363 6 6 3.1815 -2.9892 -1.4358 7 8 3.4054 -3.5597 -0.3891 8 7 3.6072 -3.5221 -2.5982 9 6 4.3407 -4.7902 -2.5976 10 6 5.8174 -4.5163 -2.4737 11 1 6.1739 -3.4993 -2.4029 12 6 6.7134 -5.5640 -2.4507 13 7 6.2792 -6.8024 -2.5364 14 14 8.5439 -5.2244 -2.2978 15 1 8.9234 -5.1940 -0.8625 16 1 9.3055 -6.2958 -2.9886 17 1 8.8578 -3.9135 -2.9208 18 6 3.3372 -2.8326 -3.8623 19 6 4.4703 -1.8884 -4.1715 20 6 5.5758 -2.1901 -4.8760 21 6 6.3646 -1.0178 -4.9223 22 6 5.6939 -0.0696 -4.2438 23 8 4.5450 -0.6013 -3.7952 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.6902 1.3628 -0.8899 27 1 1.3551 2.1336 -0.0005 28 1 2.6901 1.3629 0.8900 29 1 1.4386 -2.0853 0.4352 30 1 2.9742 -1.1985 0.5901 31 1 3.0524 -0.9042 -1.8709 32 1 1.5168 -1.7909 -2.0257 33 1 4.0123 -5.3995 -1.7555 34 1 4.1467 -5.3225 -3.5287 35 1 6.9096 -7.5396 -2.5199 36 1 3.2462 -3.5657 -4.6638 37 1 2.4078 -2.2694 -3.7778 38 1 5.8144 -3.1445 -5.3217 39 1 7.3222 -0.9052 -5.4091 40 1 6.0217 0.9478 -4.0892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353553040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:54 Heat of formation + Delta-G solvation = -11.860899 kcal Electronic energy + Delta-G solvation = -21942.400429 eV Core-core repulsion = 18724.267760 eV Total energy + Delta-G solvation = -3218.132669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.10567 -39.12698 -36.35728 -35.13682 -32.73684 -32.51106 -30.97618 -29.97845 -27.55829 -27.19473 -25.39661 -24.36315 -22.17346 -21.28815 -20.30183 -18.43863 -18.32516 -17.13247 -16.58839 -16.22197 -15.45267 -15.27828 -15.14853 -14.50881 -14.31272 -14.19933 -13.58687 -13.36768 -12.94191 -12.51851 -12.42908 -12.35537 -12.21020 -11.93892 -11.85941 -11.66012 -11.43555 -11.18051 -10.95842 -10.86735 -10.65863 -10.57624 -10.19116 -9.67293 -9.38715 -9.12478 -8.81805 -8.41644 -8.10683 -7.73323 -6.02098 -4.04546 2.10705 2.25307 3.06418 3.28370 3.32230 3.38506 3.41802 3.54991 4.01357 4.47582 4.83811 4.96667 5.07935 5.18764 5.30699 5.33585 5.39144 5.45162 5.48274 5.56173 5.66074 5.66820 5.79469 5.90397 5.92518 5.95777 6.16029 6.24256 6.37309 6.45264 6.51093 6.67251 6.93531 6.95881 7.01475 7.41690 7.48557 7.59450 7.95152 8.25654 8.33336 8.92958 9.07941 9.59866 11.06422 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.006118 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.932548 B = 4575.317129 C = 5500.785731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.136 4.136 6 C 0.508 3.492 7 O -0.536 6.536 8 N -0.597 5.597 9 C 0.244 3.756 10 C -0.515 4.515 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.196 3.804 19 C -0.028 4.028 20 C -0.171 4.171 21 C -0.213 4.213 22 C -0.055 4.055 23 O -0.180 6.180 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 14.564 -3.497 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.117 4.117 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.176 4.176 6 C 0.296 3.704 7 O -0.413 6.413 8 N -0.328 5.328 9 C 0.125 3.875 10 C -0.554 4.554 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.537 5.537 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.198 1.198 18 C 0.071 3.929 19 C -0.079 4.079 20 C -0.191 4.191 21 C -0.232 4.232 22 C -0.123 4.123 23 O -0.076 6.076 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -7.956 14.170 -2.770 16.485 hybrid contribution 1.585 0.112 -0.150 1.596 sum -6.371 14.282 -2.920 15.909 Atomic orbital electron populations 1.23672 0.95163 1.01572 1.03780 1.21849 0.95442 0.95907 0.98498 1.20894 1.00198 0.94217 1.02429 1.20401 1.00719 0.93736 0.95991 1.21711 1.00891 0.96603 0.98440 1.20450 0.79737 0.86342 0.83911 1.90671 1.57371 1.62464 1.30767 1.48360 1.55562 1.24686 1.04224 1.19358 0.90919 0.78861 0.98344 1.21402 0.91032 0.93104 1.49818 0.92346 1.24888 0.98874 0.94926 0.95313 1.69931 1.34645 0.98262 1.50813 0.86581 0.85297 0.77848 0.78278 1.20695 1.21245 1.19844 1.19816 0.92072 0.92055 0.88924 1.22988 1.01060 0.82626 1.01235 1.21608 0.94180 0.99566 1.03705 1.21811 1.01973 0.93908 1.05514 1.23820 0.86614 0.99678 1.02183 1.83948 1.37500 1.24115 1.62083 0.88802 0.88538 0.91361 0.92307 0.91596 0.90666 0.90586 0.88959 0.89680 0.93663 0.94965 0.92846 0.87515 0.89999 0.83261 0.84124 0.78872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.22 13.90 29.01 0.40 -1.82 16 2 C -0.12 -1.41 5.31 -101.07 -0.54 -1.94 16 3 C -0.12 -1.26 10.12 36.01 0.36 -0.89 16 4 C -0.07 -1.04 4.67 -27.88 -0.13 -1.17 16 5 C -0.14 -2.11 4.23 -27.88 -0.12 -2.22 16 6 C 0.51 10.58 7.67 -10.99 -0.08 10.50 16 7 O -0.54 -13.49 15.56 5.55 0.09 -13.41 16 8 N -0.60 -12.40 2.44 -176.43 -0.43 -12.83 16 9 C 0.24 6.22 5.20 -5.20 -0.03 6.20 16 10 C -0.51 -14.34 9.13 -34.44 -0.31 -14.65 16 11 H 0.06 1.68 7.64 -52.49 -0.40 1.28 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 14 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 15 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 18 C 0.20 3.16 5.78 -5.19 -0.03 3.13 16 19 C -0.03 -0.48 6.85 -35.62 -0.24 -0.73 16 20 C -0.17 -3.04 10.39 -39.70 -0.41 -3.45 16 21 C -0.21 -3.35 10.91 -39.71 -0.43 -3.78 16 22 C -0.06 -0.79 12.09 29.41 0.36 -0.43 16 23 O -0.18 -2.90 9.56 5.68 0.05 -2.84 16 24 H 0.09 0.87 7.83 -52.49 -0.41 0.46 16 25 H 0.10 1.02 7.99 -52.49 -0.42 0.60 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.52 7.78 -51.93 -0.40 0.11 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16 30 H 0.08 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.09 1.40 6.93 -51.93 -0.36 1.04 16 32 H 0.08 1.11 7.40 -51.93 -0.38 0.73 16 33 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 34 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.11 1.56 7.89 -51.93 -0.41 1.15 16 37 H 0.08 1.05 6.44 -51.93 -0.33 0.72 16 38 H 0.15 2.73 8.06 -52.49 -0.42 2.31 16 39 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 40 H 0.19 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -33.08 343.47 -6.70 -39.79 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.00 Total: 2.38 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.30 Total: -9.62 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.31 Total: -38.55 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.14 Total: -16.25 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.08 -6.70 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353553040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.926 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds