Wall clock time and date at job start Mon Mar 30 2020 01:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 119.99610 * 2 1 4 4 C 1.50700 * 120.00204 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.46733 * 95.00139 * 4 2 1 6 6 C 1.50702 * 109.47266 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99578 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00755 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00646 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46897 * 89.99800 * 14 12 10 16 16 H 1.48496 * 109.47501 * 210.00050 * 14 12 10 17 17 H 1.48501 * 109.46824 * 330.00136 * 14 12 10 18 18 C 1.46505 * 119.99455 * 0.02562 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 1.07991 * 120.00362 * 0.02562 * 1 2 3 25 25 H 1.07999 * 120.00015 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46768 * 239.99297 * 3 2 1 27 27 H 1.09000 * 109.47406 * 359.97438 * 3 2 1 28 28 H 1.09004 * 109.46919 * 120.00206 * 3 2 1 29 29 H 1.09006 * 109.47040 * 335.00684 * 4 2 1 30 30 H 1.09002 * 109.47098 * 215.00411 * 4 2 1 31 31 H 1.09004 * 109.47424 * 60.00476 * 5 4 2 32 32 H 1.09002 * 109.47551 * 299.99995 * 5 4 2 33 33 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 34 34 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 35 35 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 37 37 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 38 38 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 39 39 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4274 -1.6844 -1.4363 6 6 3.1815 -2.9892 -1.4358 7 8 3.4054 -3.5597 -0.3891 8 7 3.6072 -3.5221 -2.5982 9 6 4.3407 -4.7902 -2.5976 10 6 5.8174 -4.5163 -2.4737 11 1 6.1739 -3.4993 -2.4029 12 6 6.7134 -5.5640 -2.4507 13 7 6.2792 -6.8024 -2.5364 14 14 8.5439 -5.2244 -2.2978 15 1 8.9234 -5.1940 -0.8625 16 1 9.3055 -6.2958 -2.9886 17 1 8.8578 -3.9135 -2.9208 18 6 3.3372 -2.8326 -3.8623 19 6 4.4703 -1.8884 -4.1715 20 6 5.5758 -2.1901 -4.8760 21 6 6.3646 -1.0178 -4.9223 22 6 5.6939 -0.0696 -4.2438 23 8 4.5450 -0.6013 -3.7952 24 1 -0.5400 0.9352 -0.0004 25 1 -0.5400 -0.9353 -0.0004 26 1 2.6902 1.3628 -0.8899 27 1 1.3551 2.1336 -0.0005 28 1 2.6901 1.3629 0.8900 29 1 1.4386 -2.0853 0.4352 30 1 2.9742 -1.1985 0.5901 31 1 3.0524 -0.9042 -1.8709 32 1 1.5168 -1.7909 -2.0257 33 1 4.0123 -5.3995 -1.7555 34 1 4.1467 -5.3225 -3.5287 35 1 6.9096 -7.5396 -2.5199 36 1 3.2462 -3.5657 -4.6638 37 1 2.4078 -2.2694 -3.7778 38 1 5.8144 -3.1445 -5.3217 39 1 7.3222 -0.9052 -5.4091 40 1 6.0217 0.9478 -4.0892 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353553040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:54 Heat of formation + Delta-G solvation = -31.078475 kcal Electronic energy + Delta-G solvation = -21943.233765 eV Core-core repulsion = 18724.267760 eV Total energy + Delta-G solvation = -3218.966005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.34086 -40.75892 -37.45413 -36.78119 -34.82569 -33.76706 -32.28999 -31.38838 -29.36353 -28.04689 -26.74263 -25.99949 -23.92581 -22.53788 -21.59641 -19.98164 -19.31107 -18.77476 -18.25510 -17.74646 -17.12583 -16.64167 -16.55000 -16.17211 -15.59260 -15.41446 -14.84232 -14.59183 -14.30113 -14.06625 -13.91979 -13.67556 -13.51706 -13.40265 -13.31572 -13.00500 -12.88799 -12.72006 -12.50921 -12.45289 -12.23008 -11.93480 -11.80051 -11.72378 -10.70577 -10.65600 -10.61841 -9.88490 -9.66805 -9.24452 -8.20644 -6.30651 0.85694 1.33112 1.35359 1.36523 1.45116 1.71070 1.85422 2.23903 2.34445 2.51251 3.10369 3.63341 3.88354 3.98379 4.09260 4.09909 4.24162 4.29466 4.36801 4.44982 4.54233 4.68348 4.76630 4.88793 4.96669 5.02276 5.03673 5.10909 5.15676 5.17747 5.22139 5.25526 5.32957 5.55962 5.70564 5.78318 5.82156 6.04845 6.09677 6.31584 6.65695 6.77632 7.29974 7.45013 8.87114 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.006118 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.932548 B = 4575.317129 C = 5500.785731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.132 4.132 3 C -0.119 4.119 4 C -0.067 4.067 5 C -0.119 4.119 6 C 0.498 3.502 7 O -0.591 6.591 8 N -0.599 5.599 9 C 0.259 3.741 10 C -0.518 4.518 11 H 0.047 0.953 12 C 0.011 3.989 13 N -0.928 5.928 14 Si 0.953 3.047 15 H -0.284 1.284 16 H -0.275 1.275 17 H -0.265 1.265 18 C 0.191 3.809 19 C -0.041 4.041 20 C -0.195 4.195 21 C -0.236 4.236 22 C -0.038 4.038 23 O -0.181 6.181 24 H 0.117 0.883 25 H 0.096 0.904 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.001 0.999 34 H 0.029 0.971 35 H 0.265 0.735 36 H 0.117 0.883 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.158 0.842 40 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.338 17.548 -4.265 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.132 4.132 3 C -0.175 4.175 4 C -0.105 4.105 5 C -0.158 4.158 6 C 0.288 3.712 7 O -0.472 6.472 8 N -0.330 5.330 9 C 0.138 3.862 10 C -0.556 4.556 11 H 0.065 0.935 12 C -0.187 4.187 13 N -0.569 5.569 14 Si 0.778 3.222 15 H -0.210 1.210 16 H -0.200 1.200 17 H -0.190 1.190 18 C 0.069 3.931 19 C -0.092 4.092 20 C -0.215 4.215 21 C -0.255 4.255 22 C -0.105 4.105 23 O -0.078 6.078 24 H 0.135 0.865 25 H 0.114 0.886 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.019 0.981 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.151 0.849 39 H 0.175 0.825 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -8.400 17.185 -3.579 19.460 hybrid contribution 1.680 -0.799 0.076 1.862 sum -6.720 16.386 -3.503 18.053 Atomic orbital electron populations 1.23883 0.94707 1.02692 1.01291 1.21736 0.95801 0.95039 1.00670 1.20900 1.00500 0.93868 1.02282 1.20311 0.99908 0.95238 0.95035 1.21672 1.01362 0.93114 0.99679 1.21487 0.79220 0.87596 0.82885 1.90639 1.59536 1.64315 1.32745 1.48320 1.54727 1.23556 1.06355 1.18839 0.90461 0.80834 0.96112 1.21530 0.92267 0.92465 1.49379 0.93479 1.25674 1.03188 0.94771 0.95073 1.70033 1.36120 0.99044 1.51675 0.85627 0.80295 0.78289 0.77956 1.21045 1.20009 1.18969 1.20138 0.93612 0.92416 0.86953 1.22948 1.01181 0.83360 1.01732 1.21734 0.95375 0.99895 1.04505 1.22097 1.03005 0.93573 1.06856 1.24693 0.85086 1.00999 0.99715 1.83950 1.38325 1.23483 1.62026 0.86531 0.88563 0.91384 0.90305 0.91951 0.91996 0.92891 0.87898 0.86460 0.98130 0.95257 0.92625 0.86456 0.85939 0.84921 0.82474 0.74360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.49 13.90 67.78 0.94 -2.55 16 2 C -0.13 -2.88 5.31 -16.49 -0.09 -2.96 16 3 C -0.12 -2.15 10.12 71.24 0.72 -1.43 16 4 C -0.07 -1.93 4.67 29.85 0.14 -1.79 16 5 C -0.12 -3.48 4.23 29.85 0.13 -3.36 16 6 C 0.50 21.00 7.67 87.66 0.67 21.67 16 7 O -0.59 -31.15 15.56 -3.05 -0.05 -31.19 16 8 N -0.60 -25.20 2.44 -830.50 -2.03 -27.23 16 9 C 0.26 13.74 5.20 85.63 0.45 14.19 16 10 C -0.52 -29.62 9.13 25.60 0.23 -29.39 16 11 H 0.05 2.76 7.64 -2.91 -0.02 2.73 16 12 C 0.01 0.66 5.46 84.65 0.46 1.13 16 13 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 14 Si 0.95 45.84 29.54 68.60 2.03 47.86 16 15 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 18 C 0.19 5.95 5.78 85.63 0.50 6.44 16 19 C -0.04 -1.37 6.85 24.83 0.17 -1.20 16 20 C -0.19 -6.86 10.39 22.19 0.23 -6.63 16 21 C -0.24 -7.00 10.91 22.19 0.24 -6.76 16 22 C -0.04 -0.95 12.09 66.97 0.81 -0.14 16 23 O -0.18 -5.35 9.56 -2.58 -0.02 -5.37 16 24 H 0.12 1.66 7.83 -2.92 -0.02 1.63 16 25 H 0.10 1.78 7.99 -2.91 -0.02 1.76 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.10 7.78 -2.39 -0.02 1.08 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 1.91 7.95 -2.38 -0.02 1.89 16 30 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 31 H 0.10 2.86 6.93 -2.38 -0.02 2.85 16 32 H 0.12 2.69 7.40 -2.39 -0.02 2.68 16 33 H 0.00 0.04 7.42 -2.38 -0.02 0.02 16 34 H 0.03 1.56 7.89 -2.39 -0.02 1.54 16 35 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.12 3.35 7.89 -2.39 -0.02 3.33 16 37 H 0.12 2.77 6.44 -2.39 -0.02 2.76 16 38 H 0.13 5.00 8.06 -2.91 -0.02 4.98 16 39 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.24 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -74.80 343.47 6.83 -67.98 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 1.01 Total: 16.56 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.60 Total: -12.78 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -1.74 Total: -83.06 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.07 Total: -36.57 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -74.80 6.83 -67.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353553040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.899 kcal (2) G-P(sol) polarization free energy of solvation -74.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds