Wall clock time and date at job start Mon Mar 30 2020 01:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 C 1.52997 * 109.47125 * 119.99974 * 2 1 3 5 5 H 1.08997 * 109.47364 * 297.14136 * 4 2 1 6 6 C 1.53000 * 109.47166 * 177.14338 * 4 2 1 7 7 O 1.42900 * 109.46863 * 304.13599 * 6 4 2 8 8 N 1.46491 * 109.47221 * 57.14341 * 4 2 1 9 9 C 1.34780 * 120.00333 * 205.27439 * 8 4 2 10 10 O 1.21550 * 119.99648 * 359.72726 * 9 8 4 11 11 C 1.47883 * 120.00142 * 179.72205 * 9 8 4 12 12 C 1.39919 * 120.02887 * 359.72824 * 11 9 8 13 13 C 1.38323 * 120.35950 * 179.71798 * 12 11 9 14 14 C 1.37760 * 120.41171 * 0.55731 * 13 12 11 15 15 C 1.40749 * 120.03743 * 359.72178 * 14 13 12 16 16 C 1.41437 * 120.17604 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00006 * 26.94134 * 16 15 14 18 18 C 1.39933 * 120.00057 * 206.94069 * 16 15 14 19 19 N 1.30826 * 119.99803 * 12.83096 * 18 16 15 20 20 Si 1.86804 * 120.00109 * 192.82818 * 18 16 15 21 21 H 1.48496 * 109.46812 * 89.99898 * 20 18 16 22 22 H 1.48496 * 109.46918 * 210.00258 * 20 18 16 23 23 H 1.48504 * 109.46808 * 330.00130 * 20 18 16 24 24 C 1.38997 * 120.02116 * 180.02562 * 11 9 8 25 25 H 1.09006 * 109.46814 * 300.00033 * 1 2 3 26 26 H 1.08996 * 109.46790 * 59.99689 * 1 2 3 27 27 H 1.08993 * 109.47184 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47112 * 240.00073 * 2 1 3 29 29 H 1.09005 * 109.47205 * 66.38400 * 3 2 1 30 30 H 1.08996 * 109.47124 * 186.38747 * 3 2 1 31 31 H 1.09000 * 109.47364 * 306.38643 * 3 2 1 32 32 H 1.08999 * 109.47360 * 64.13444 * 6 4 2 33 33 H 1.08996 * 109.47059 * 184.14028 * 6 4 2 34 34 H 0.96705 * 114.00066 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00459 * 24.99377 * 8 4 2 36 36 H 1.07996 * 119.81522 * 359.97312 * 12 11 9 37 37 H 1.08001 * 119.79622 * 180.25798 * 13 12 11 38 38 H 1.08000 * 119.97702 * 179.74793 * 14 13 12 39 39 H 0.97003 * 119.99716 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.20978 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7192 -0.1787 2.1385 6 6 3.5683 -0.7838 1.2138 7 8 3.9914 -1.4100 0.0010 8 7 1.4964 -2.0811 1.2842 9 6 1.3632 -2.7236 2.4614 10 8 1.6989 -2.1766 3.4937 11 6 0.8086 -4.0941 2.4973 12 6 0.4166 -4.7221 1.3100 13 6 -0.0975 -6.0059 1.3349 14 6 -0.2403 -6.6768 2.5296 15 6 0.1431 -6.0591 3.7348 16 6 -0.0017 -6.7454 4.9629 17 1 0.0211 -7.8250 4.9842 18 6 -0.1745 -6.0257 6.1505 19 7 -0.4529 -4.7481 6.1065 20 14 -0.0079 -6.8891 7.7986 21 1 1.4040 -6.8193 8.2534 22 1 -0.8830 -6.2235 8.7968 23 1 -0.4123 -8.3108 7.6557 24 6 0.6706 -4.7569 3.7112 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.7730 1.9224 0.9416 30 1 3.1240 1.4447 -0.1143 31 1 1.5864 1.9883 -0.8273 32 1 3.9746 0.2265 1.2619 33 1 3.9282 -1.3611 2.0654 34 1 4.9514 -1.4835 -0.0897 35 1 1.2283 -2.5176 0.4605 36 1 0.5199 -4.2031 0.3685 37 1 -0.3934 -6.4836 0.4126 38 1 -0.6464 -7.6775 2.5414 39 1 -0.5730 -4.2493 6.9297 40 1 0.9678 -4.2745 4.6306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457380644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:58 Heat of formation + Delta-G solvation = -86.166414 kcal Electronic energy + Delta-G solvation = -21559.911146 eV Core-core repulsion = 18338.556349 eV Total energy + Delta-G solvation = -3221.354798 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.58835 -37.76337 -36.70017 -35.41873 -33.73412 -32.80112 -30.22798 -29.40764 -28.42698 -26.92804 -25.26482 -23.58316 -22.00606 -20.93850 -20.03578 -19.34664 -17.66223 -17.31585 -16.34466 -15.65703 -15.21148 -15.00427 -14.79616 -14.50983 -13.91534 -13.58246 -13.47116 -13.10863 -12.84581 -12.71774 -12.48251 -12.26007 -12.22155 -11.97461 -11.61580 -11.15290 -11.09660 -11.06453 -10.79377 -10.72694 -10.57733 -10.45787 -9.98542 -9.91675 -9.67104 -9.23292 -8.95968 -8.57662 -7.59786 -7.46496 -6.73206 -4.40470 2.23877 2.84094 3.09230 3.12347 3.16845 3.71068 3.88941 3.94804 4.35870 4.67102 4.68768 4.91219 5.05306 5.36660 5.39270 5.49137 5.59958 5.63118 5.66030 5.80151 5.82267 5.89749 5.95250 6.07226 6.12274 6.28695 6.31139 6.39209 6.74061 6.94565 7.02353 7.05404 7.25206 7.41318 7.62654 7.72993 7.79812 7.96120 8.15947 8.23646 8.53986 8.83900 8.86216 9.00667 10.20659 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.004388 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.126982 B = 6380.029598 C = 6808.838708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C -0.143 4.143 4 C 0.154 3.846 5 H 0.096 0.904 6 C 0.062 3.938 7 O -0.567 6.567 8 N -0.722 5.722 9 C 0.564 3.436 10 O -0.551 6.551 11 C -0.130 4.130 12 C -0.211 4.211 13 C -0.101 4.101 14 C -0.208 4.208 15 C 0.097 3.903 16 C -0.461 4.461 17 H 0.080 0.920 18 C 0.071 3.929 19 N -0.791 5.791 20 Si 0.913 3.087 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.088 4.088 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.374 0.626 35 H 0.400 0.600 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.283 0.717 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 8.612 -9.565 13.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.201 4.201 4 C 0.049 3.951 5 H 0.113 0.887 6 C -0.017 4.017 7 O -0.371 6.371 8 N -0.375 5.375 9 C 0.355 3.645 10 O -0.430 6.430 11 C -0.133 4.133 12 C -0.231 4.231 13 C -0.119 4.119 14 C -0.228 4.228 15 C 0.095 3.905 16 C -0.491 4.491 17 H 0.098 0.902 18 C -0.147 4.147 19 N -0.416 5.416 20 Si 0.737 3.263 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.109 4.109 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.236 0.764 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.300 9.188 -8.746 13.394 hybrid contribution 0.484 -0.465 0.461 0.814 sum 4.784 8.723 -8.285 12.947 Atomic orbital electron populations 1.21852 0.94795 1.02400 1.01548 1.21283 0.96036 0.96252 0.98302 1.21814 1.01023 0.95386 1.01869 1.20997 0.90743 0.84322 0.99059 0.88656 1.22689 0.95900 0.96160 0.86907 1.86466 1.27103 1.83042 1.40517 1.45891 1.66296 1.15555 1.09774 1.18855 0.76668 0.86446 0.82507 1.90680 1.50784 1.68302 1.33196 1.19501 1.05603 0.92800 0.95404 1.20382 1.10941 0.96751 0.95068 1.20443 1.00246 0.94645 0.96597 1.21143 1.08282 1.00511 0.92893 1.17615 0.88685 0.91660 0.92562 1.19586 1.44038 0.94707 0.90757 0.90186 1.25945 0.92393 0.94793 1.01524 1.69771 1.32918 1.08297 1.30589 0.86240 0.79172 0.80284 0.80604 1.19246 1.20241 1.18635 1.21707 0.97766 0.95475 0.95915 0.92639 0.92753 0.92157 0.89826 0.92617 0.92509 0.92446 0.93190 0.93017 0.78007 0.76368 0.89185 0.88896 0.88616 0.90570 0.84606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.00 37.16 0.33 -1.39 16 2 C -0.10 -1.15 2.40 -90.62 -0.22 -1.37 16 3 C -0.14 -1.36 8.73 37.16 0.32 -1.03 16 4 C 0.15 2.23 1.95 -67.94 -0.13 2.09 16 5 H 0.10 1.52 7.57 -51.93 -0.39 1.12 16 6 C 0.06 0.82 6.45 37.16 0.24 1.06 16 7 O -0.57 -6.88 12.70 -35.23 -0.45 -7.32 16 8 N -0.72 -12.40 4.23 -54.74 -0.23 -12.63 16 9 C 0.56 12.50 7.74 -12.31 -0.10 12.41 16 10 O -0.55 -13.79 15.99 5.32 0.09 -13.71 16 11 C -0.13 -3.12 5.87 -105.04 -0.62 -3.74 16 12 C -0.21 -4.54 9.55 -38.92 -0.37 -4.91 16 13 C -0.10 -2.19 10.01 -39.72 -0.40 -2.59 16 14 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 15 C 0.10 2.60 5.56 -106.87 -0.59 2.01 16 16 C -0.46 -12.27 9.06 -37.73 -0.34 -12.61 16 17 H 0.08 2.02 7.88 -52.48 -0.41 1.61 16 18 C 0.07 1.83 5.23 -17.35 -0.09 1.74 16 19 N -0.79 -21.22 10.83 55.55 0.60 -20.62 16 20 Si 0.91 19.02 29.58 -169.99 -5.03 13.99 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.09 -2.39 8.22 -38.44 -0.32 -2.71 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.76 7.26 -51.93 -0.38 0.39 16 28 H 0.08 1.00 7.48 -51.93 -0.39 0.61 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 6.94 -51.93 -0.36 0.15 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.53 6.87 -51.93 -0.36 0.17 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.37 2.95 9.12 45.56 0.42 3.36 16 35 H 0.40 6.34 6.23 -40.82 -0.25 6.08 16 36 H 0.09 1.63 6.38 -52.49 -0.33 1.30 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.28 6.99 8.30 -40.82 -0.34 6.66 16 40 H 0.14 3.97 5.73 -52.49 -0.30 3.67 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -30.51 330.77 -7.55 -38.05 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -4.86 Total: 13.68 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -2.65 Total: -16.43 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.37 Total: -33.25 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.36 Total: -21.03 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.51 -7.55 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457380644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.112 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds