Wall clock time and date at job start Mon Mar 30 2020 01:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 C 1.52997 * 109.47125 * 119.99974 * 2 1 3 5 5 H 1.08997 * 109.47364 * 297.14136 * 4 2 1 6 6 C 1.53000 * 109.47166 * 177.14338 * 4 2 1 7 7 O 1.42900 * 109.46863 * 304.13599 * 6 4 2 8 8 N 1.46491 * 109.47221 * 57.14341 * 4 2 1 9 9 C 1.34780 * 120.00333 * 205.27439 * 8 4 2 10 10 O 1.21550 * 119.99648 * 359.72726 * 9 8 4 11 11 C 1.47883 * 120.00142 * 179.72205 * 9 8 4 12 12 C 1.39919 * 120.02887 * 359.72824 * 11 9 8 13 13 C 1.38323 * 120.35950 * 179.71798 * 12 11 9 14 14 C 1.37760 * 120.41171 * 0.55731 * 13 12 11 15 15 C 1.40749 * 120.03743 * 359.72178 * 14 13 12 16 16 C 1.41437 * 120.17604 * 180.02562 * 15 14 13 17 17 H 1.08007 * 120.00006 * 26.94134 * 16 15 14 18 18 C 1.39933 * 120.00057 * 206.94069 * 16 15 14 19 19 N 1.30826 * 119.99803 * 12.83096 * 18 16 15 20 20 Si 1.86804 * 120.00109 * 192.82818 * 18 16 15 21 21 H 1.48496 * 109.46812 * 89.99898 * 20 18 16 22 22 H 1.48496 * 109.46918 * 210.00258 * 20 18 16 23 23 H 1.48504 * 109.46808 * 330.00130 * 20 18 16 24 24 C 1.38997 * 120.02116 * 180.02562 * 11 9 8 25 25 H 1.09006 * 109.46814 * 300.00033 * 1 2 3 26 26 H 1.08996 * 109.46790 * 59.99689 * 1 2 3 27 27 H 1.08993 * 109.47184 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47112 * 240.00073 * 2 1 3 29 29 H 1.09005 * 109.47205 * 66.38400 * 3 2 1 30 30 H 1.08996 * 109.47124 * 186.38747 * 3 2 1 31 31 H 1.09000 * 109.47364 * 306.38643 * 3 2 1 32 32 H 1.08999 * 109.47360 * 64.13444 * 6 4 2 33 33 H 1.08996 * 109.47059 * 184.14028 * 6 4 2 34 34 H 0.96705 * 114.00066 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00459 * 24.99377 * 8 4 2 36 36 H 1.07996 * 119.81522 * 359.97312 * 12 11 9 37 37 H 1.08001 * 119.79622 * 180.25798 * 13 12 11 38 38 H 1.08000 * 119.97702 * 179.74793 * 14 13 12 39 39 H 0.97003 * 119.99716 * 179.97438 * 19 18 16 40 40 H 1.07994 * 120.20978 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7192 -0.1787 2.1385 6 6 3.5683 -0.7838 1.2138 7 8 3.9914 -1.4100 0.0010 8 7 1.4964 -2.0811 1.2842 9 6 1.3632 -2.7236 2.4614 10 8 1.6989 -2.1766 3.4937 11 6 0.8086 -4.0941 2.4973 12 6 0.4166 -4.7221 1.3100 13 6 -0.0975 -6.0059 1.3349 14 6 -0.2403 -6.6768 2.5296 15 6 0.1431 -6.0591 3.7348 16 6 -0.0017 -6.7454 4.9629 17 1 0.0211 -7.8250 4.9842 18 6 -0.1745 -6.0257 6.1505 19 7 -0.4529 -4.7481 6.1065 20 14 -0.0079 -6.8891 7.7986 21 1 1.4040 -6.8193 8.2534 22 1 -0.8830 -6.2235 8.7968 23 1 -0.4123 -8.3108 7.6557 24 6 0.6706 -4.7569 3.7112 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.7730 1.9224 0.9416 30 1 3.1240 1.4447 -0.1143 31 1 1.5864 1.9883 -0.8273 32 1 3.9746 0.2265 1.2619 33 1 3.9282 -1.3611 2.0654 34 1 4.9514 -1.4835 -0.0897 35 1 1.2283 -2.5176 0.4605 36 1 0.5199 -4.2031 0.3685 37 1 -0.3934 -6.4836 0.4126 38 1 -0.6464 -7.6775 2.5414 39 1 -0.5730 -4.2493 6.9297 40 1 0.9678 -4.2745 4.6306 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001457380644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:57 Heat of formation + Delta-G solvation = -107.125871 kcal Electronic energy + Delta-G solvation = -21560.820017 eV Core-core repulsion = 18338.556349 eV Total energy + Delta-G solvation = -3222.263668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.14851 -39.25969 -38.31615 -36.45172 -35.60955 -34.23789 -31.98781 -31.27631 -29.60507 -27.87456 -27.15061 -24.95868 -23.46113 -22.78733 -21.32011 -20.90296 -19.42670 -18.37615 -17.94566 -17.18305 -16.89854 -16.46900 -16.22274 -15.83300 -15.49349 -15.07309 -15.05229 -14.48863 -14.32399 -14.27112 -13.79418 -13.48401 -13.39310 -13.11214 -12.93448 -12.89259 -12.81666 -12.53277 -12.18519 -12.02315 -11.88619 -11.74448 -11.58556 -11.49581 -11.11777 -10.98967 -10.68454 -10.07810 -9.45982 -9.36945 -8.62424 -6.40425 0.37823 1.00673 1.36264 1.47319 1.50949 2.10807 2.19908 2.25468 2.80470 3.38544 3.65064 3.69294 3.94510 4.04941 4.13097 4.36590 4.41449 4.42540 4.56785 4.59295 4.66654 4.80071 4.85544 4.91735 5.00780 5.03799 5.08920 5.18626 5.22246 5.32221 5.38221 5.44006 5.51540 5.59906 5.86397 5.92090 6.05873 6.28335 6.52386 6.69951 6.86420 6.88421 6.94396 7.32953 8.33378 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.004388 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.126982 B = 6380.029598 C = 6808.838708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 C -0.140 4.140 4 C 0.145 3.855 5 H 0.076 0.924 6 C 0.070 3.930 7 O -0.574 6.574 8 N -0.700 5.700 9 C 0.561 3.439 10 O -0.590 6.590 11 C -0.141 4.141 12 C -0.194 4.194 13 C -0.098 4.098 14 C -0.214 4.214 15 C 0.066 3.934 16 C -0.498 4.498 17 H 0.084 0.916 18 C 0.027 3.973 19 N -0.832 5.832 20 Si 0.986 3.014 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.251 1.251 24 C -0.127 4.127 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.021 0.979 34 H 0.394 0.606 35 H 0.410 0.590 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.110 0.890 39 H 0.285 0.715 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.017 8.909 -12.158 15.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.198 4.198 4 C 0.040 3.960 5 H 0.094 0.906 6 C -0.009 4.009 7 O -0.381 6.381 8 N -0.351 5.351 9 C 0.351 3.649 10 O -0.472 6.472 11 C -0.144 4.144 12 C -0.214 4.214 13 C -0.116 4.116 14 C -0.233 4.233 15 C 0.064 3.936 16 C -0.528 4.528 17 H 0.102 0.898 18 C -0.187 4.187 19 N -0.459 5.459 20 Si 0.806 3.194 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.174 1.174 24 C -0.147 4.147 25 H 0.064 0.936 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.243 0.757 35 H 0.247 0.753 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.128 0.872 39 H 0.096 0.904 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.553 9.491 -11.410 15.523 hybrid contribution 0.438 -0.498 1.028 1.224 sum 4.991 8.993 -10.381 14.613 Atomic orbital electron populations 1.21873 0.94867 1.01742 1.02214 1.21236 0.95879 0.97258 0.96399 1.21808 1.01680 0.93774 1.02549 1.21290 0.92005 0.82600 1.00079 0.90571 1.22494 0.94689 0.97373 0.86305 1.86403 1.29229 1.83025 1.39472 1.45729 1.64704 1.16368 1.08343 1.18723 0.76705 0.86126 0.83381 1.90654 1.52649 1.69006 1.34915 1.19821 1.05301 0.93823 0.95485 1.20849 1.08179 0.96736 0.95590 1.20924 0.98723 0.94475 0.97440 1.21449 1.07684 1.01225 0.92977 1.17963 0.89582 0.92067 0.94009 1.19880 1.46000 0.95044 0.91868 0.89829 1.26859 0.91366 0.95282 1.05182 1.69887 1.34483 1.09983 1.31521 0.85145 0.79093 0.79470 0.75654 1.19063 1.19438 1.17398 1.21509 1.00695 0.96532 0.96010 0.93637 0.90473 0.93464 0.89344 0.92803 0.91617 0.90730 0.90149 0.96108 0.75671 0.75279 0.85017 0.84348 0.87226 0.90438 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.00 71.98 0.65 -2.50 16 2 C -0.09 -1.83 2.40 -10.79 -0.03 -1.85 16 3 C -0.14 -2.23 8.73 71.98 0.63 -1.60 16 4 C 0.14 4.03 1.95 44.99 0.09 4.12 16 5 H 0.08 2.45 7.57 -2.39 -0.02 2.43 16 6 C 0.07 1.74 6.45 71.98 0.46 2.21 16 7 O -0.57 -12.41 12.70 -148.98 -1.89 -14.30 16 8 N -0.70 -23.43 4.23 -445.39 -1.88 -25.32 16 9 C 0.56 25.39 7.74 86.80 0.67 26.06 16 10 O -0.59 -31.12 15.99 -3.87 -0.06 -31.18 16 11 C -0.14 -6.88 5.87 -20.13 -0.12 -7.00 16 12 C -0.19 -7.91 9.55 22.70 0.22 -7.69 16 13 C -0.10 -3.97 10.01 22.18 0.22 -3.75 16 14 C -0.21 -10.16 9.78 22.77 0.22 -9.94 16 15 C 0.07 3.66 5.56 -21.32 -0.12 3.54 16 16 C -0.50 -27.59 9.06 23.47 0.21 -27.37 16 17 H 0.08 4.36 7.88 -2.91 -0.02 4.33 16 18 C 0.03 1.43 5.23 85.25 0.45 1.87 16 19 N -0.83 -47.35 10.83 21.82 0.24 -47.11 16 20 Si 0.99 40.26 29.58 68.60 2.03 42.29 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 24 C -0.13 -7.21 8.22 23.01 0.19 -7.02 16 25 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.10 7.26 -2.39 -0.02 1.08 16 28 H 0.09 1.79 7.48 -2.39 -0.02 1.78 16 29 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.06 0.94 6.94 -2.39 -0.02 0.92 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.52 6.87 -2.39 -0.02 1.50 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.39 5.12 9.12 -74.05 -0.68 4.45 16 35 H 0.41 11.99 6.23 -92.71 -0.58 11.42 16 36 H 0.13 4.22 6.38 -2.91 -0.02 4.20 16 37 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 40 H 0.10 6.40 5.73 -2.91 -0.02 6.38 16 Total: -1.00 -70.74 330.77 1.98 -68.75 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: -0.19 Total: 37.79 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 3.75 Total: -30.92 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -1.65 Total: -72.43 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -1.95 Total: -45.48 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -70.74 1.98 -68.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457380644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.372 kcal (2) G-P(sol) polarization free energy of solvation -70.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds