Wall clock time and date at job start Mon Mar 30 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46988 * 2 1 4 4 C 1.52995 * 109.47037 * 119.99576 * 2 1 3 5 5 O 1.42898 * 109.47233 * 175.00122 * 4 2 1 6 6 N 1.41597 * 114.00233 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00081 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00101 * 359.97438 * 7 6 5 9 9 C 1.50709 * 120.00062 * 180.02562 * 7 6 5 10 10 H 1.09005 * 109.46715 * 59.99389 * 9 7 6 11 11 C 1.50702 * 109.46905 * 299.99796 * 9 7 6 12 12 H 1.07996 * 119.99688 * 124.61879 * 11 9 7 13 13 C 1.37872 * 120.00069 * 304.34171 * 11 9 7 14 14 N 1.31510 * 120.00069 * 6.38609 * 13 11 9 15 15 Si 1.86795 * 120.00120 * 186.38498 * 13 11 9 16 16 H 1.48504 * 109.47424 * 90.00040 * 15 13 11 17 17 H 1.48502 * 109.47181 * 209.99985 * 15 13 11 18 18 H 1.48502 * 109.47034 * 330.00050 * 15 13 11 19 19 C 1.50701 * 109.47170 * 179.97438 * 9 7 6 20 20 C 1.38231 * 119.99779 * 313.11294 * 19 9 7 21 21 C 1.38236 * 120.00018 * 179.81137 * 20 19 9 22 22 C 1.38237 * 119.99738 * 0.39907 * 21 20 19 23 23 C 1.38238 * 119.99920 * 359.84907 * 22 21 20 24 24 C 1.38226 * 119.99983 * 133.38633 * 19 9 7 25 25 H 1.08997 * 109.47493 * 300.00114 * 1 2 3 26 26 H 1.09005 * 109.47264 * 60.00351 * 1 2 3 27 27 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47493 * 239.99886 * 2 1 3 29 29 H 1.08997 * 109.47097 * 59.99643 * 3 2 1 30 30 H 1.09003 * 109.47131 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46864 * 299.99580 * 3 2 1 32 32 H 1.09007 * 109.46990 * 55.00656 * 4 2 1 33 33 H 1.09002 * 109.47711 * 295.00361 * 4 2 1 34 34 H 0.97002 * 119.99920 * 0.02562 * 6 5 4 35 35 H 0.97000 * 120.00092 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.00205 * 359.97438 * 20 19 9 37 37 H 1.07998 * 120.00319 * 180.22762 * 21 20 19 38 38 H 1.07999 * 120.00434 * 179.83562 * 22 21 20 39 39 H 1.08002 * 119.99971 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.99966 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 8 3.4641 -0.8237 1.1921 6 7 4.0396 -1.4794 2.3074 7 6 5.3756 -1.6420 2.3779 8 8 6.0850 -1.2272 1.4860 9 6 5.9881 -2.3404 3.5647 10 1 5.5953 -3.3550 3.6317 11 6 5.6463 -1.5854 4.8233 12 1 5.1574 -2.0930 5.6416 13 6 5.9628 -0.2479 4.9324 14 7 6.4476 0.3997 3.8955 15 14 5.7032 0.6442 6.5528 16 1 6.9338 0.5409 7.3776 17 1 5.4035 2.0744 6.2880 18 1 4.5659 0.0267 7.2812 19 6 7.4852 -2.3916 3.3999 20 6 8.0347 -2.7890 2.1954 21 6 9.4080 -2.8323 2.0429 22 6 10.2317 -2.4859 3.0977 23 6 9.6821 -2.0934 4.3039 24 6 8.3088 -2.0465 4.4550 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7515 -0.1582 2.1370 34 1 3.4722 -1.8115 3.0206 35 1 6.6700 1.3408 3.9721 36 1 7.3912 -3.0633 1.3726 37 1 9.8373 -3.1392 1.1007 38 1 11.3046 -2.5222 2.9795 39 1 10.3256 -1.8232 5.1280 40 1 7.8794 -1.7399 5.3973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001558956487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:01 Heat of formation + Delta-G solvation = -19.232136 kcal Electronic energy + Delta-G solvation = -21860.576718 eV Core-core repulsion = 18642.124408 eV Total energy + Delta-G solvation = -3218.452310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.85818 -37.74543 -36.75823 -34.59521 -33.60787 -30.96415 -30.56586 -29.71431 -27.19886 -27.08693 -25.57596 -23.87942 -21.30861 -20.83508 -20.26958 -19.15095 -17.40600 -16.78896 -15.67388 -15.58200 -15.23859 -14.84291 -14.35203 -14.03629 -13.83623 -13.65123 -13.39439 -12.80183 -12.62607 -12.31622 -12.21947 -12.12687 -12.02231 -11.96482 -11.36796 -11.08536 -11.02721 -10.97141 -10.78976 -10.64652 -10.48460 -10.18197 -10.06250 -9.71070 -9.41790 -8.76950 -8.29756 -7.74330 -7.70498 -7.45416 -6.17641 -4.33965 2.45722 2.56997 2.97084 3.19167 3.27683 3.28682 4.19428 4.37942 4.86442 4.90827 4.95258 5.01217 5.10902 5.42628 5.53313 5.59623 5.73585 5.77025 5.84088 5.88381 5.95431 5.97061 6.03158 6.07376 6.30055 6.35215 6.44598 6.48894 6.64923 6.73961 6.83990 7.09223 7.17161 7.52302 7.59653 7.66135 7.73001 7.93833 8.11184 8.22245 8.53581 8.75004 9.33389 9.78881 10.83746 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.005867 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.899683 B = 4770.919290 C = 5898.605967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.040 3.960 5 O -0.158 6.158 6 N -0.599 5.599 7 C 0.562 3.438 8 O -0.532 6.532 9 C 0.071 3.929 10 H 0.062 0.938 11 C -0.550 4.550 12 H 0.070 0.930 13 C 0.076 3.924 14 N -0.836 5.836 15 Si 0.888 3.112 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.018 4.018 20 C -0.098 4.098 21 C -0.142 4.142 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.072 4.072 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.400 0.600 35 H 0.267 0.733 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 -3.265 -2.488 7.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.038 4.038 5 O -0.161 6.161 6 N -0.303 5.303 7 C 0.352 3.648 8 O -0.405 6.405 9 C 0.049 3.951 10 H 0.080 0.920 11 C -0.588 4.588 12 H 0.088 0.912 13 C -0.133 4.133 14 N -0.468 5.468 15 Si 0.714 3.286 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.196 1.196 19 C -0.019 4.019 20 C -0.116 4.116 21 C -0.161 4.161 22 C -0.161 4.161 23 C -0.165 4.165 24 C -0.089 4.089 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.238 0.762 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.069 -2.669 -3.406 7.454 hybrid contribution -0.672 0.847 1.212 1.624 sum -6.741 -1.822 -2.195 7.320 Atomic orbital electron populations 1.21775 0.94287 1.01856 1.02133 1.21025 0.95309 0.97027 0.97468 1.21811 1.02606 0.94828 1.01145 1.22874 0.82915 0.99315 0.98705 1.90507 1.18359 1.77321 1.29892 1.47815 1.06346 1.60356 1.15822 1.21411 0.78026 0.78410 0.86975 1.90542 1.59546 1.49975 1.40476 1.17787 0.89439 0.95587 0.92284 0.92024 1.20717 1.43505 0.94675 0.99877 0.91167 1.25085 0.94298 0.97597 0.96363 1.70029 1.38578 1.10006 1.28141 0.86654 0.78868 0.79112 0.83917 1.20170 1.21222 1.19649 1.19765 0.95603 0.94167 0.92362 1.21033 0.94264 0.99255 0.97083 1.20850 0.94037 1.03268 0.97898 1.20806 0.98191 1.02874 0.94221 1.21003 0.95591 1.02858 0.97061 1.21179 0.91726 0.95903 1.00135 0.92466 0.92091 0.92552 0.90338 0.92839 0.91385 0.92948 0.93135 0.92805 0.76154 0.92224 0.87206 0.87902 0.88053 0.87870 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.19 37.16 0.34 -1.06 16 2 C -0.09 -1.14 3.16 -90.62 -0.29 -1.43 16 3 C -0.15 -2.01 9.09 37.16 0.34 -1.67 16 4 C 0.04 0.61 5.61 37.16 0.21 0.82 16 5 O -0.16 -3.31 10.64 -29.66 -0.32 -3.62 16 6 N -0.60 -12.96 6.29 31.22 0.20 -12.76 16 7 C 0.56 13.97 5.43 -10.98 -0.06 13.91 16 8 O -0.53 -15.12 14.27 -12.63 -0.18 -15.30 16 9 C 0.07 1.66 2.78 -94.07 -0.26 1.40 16 10 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 11 C -0.55 -13.25 7.11 -34.44 -0.24 -13.50 16 12 H 0.07 1.62 7.82 -52.49 -0.41 1.20 16 13 C 0.08 1.91 3.90 -17.82 -0.07 1.84 16 14 N -0.84 -23.12 11.12 55.43 0.62 -22.50 16 15 Si 0.89 19.69 29.54 -169.99 -5.02 14.66 16 16 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 19 C -0.02 -0.43 4.63 -104.63 -0.48 -0.91 16 20 C -0.10 -2.24 8.21 -39.58 -0.32 -2.56 16 21 C -0.14 -2.92 10.05 -39.58 -0.40 -3.32 16 22 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 23 C -0.15 -3.04 10.05 -39.58 -0.40 -3.43 16 24 C -0.07 -1.65 8.46 -39.59 -0.33 -1.99 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.14 7.82 -51.93 -0.41 0.73 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.40 7.48 8.43 -40.82 -0.34 7.14 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.11 2.50 6.99 -52.49 -0.37 2.14 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 39 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 40 H 0.13 3.04 6.05 -52.48 -0.32 2.72 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -30.91 333.75 -8.10 -39.01 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -6.05 Total: 10.58 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.37 Total: -15.10 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.81 Total: -35.26 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.50 Total: -18.92 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.91 -8.10 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558956487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.781 kcal (2) G-P(sol) polarization free energy of solvation -30.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds