Wall clock time and date at job start Mon Mar 30 2020 02:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46988 * 2 1 4 4 C 1.52995 * 109.47037 * 119.99576 * 2 1 3 5 5 O 1.42898 * 109.47233 * 175.00122 * 4 2 1 6 6 N 1.41597 * 114.00233 * 180.02562 * 5 4 2 7 7 C 1.34778 * 120.00081 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00101 * 359.97438 * 7 6 5 9 9 C 1.50709 * 120.00062 * 180.02562 * 7 6 5 10 10 H 1.09005 * 109.46715 * 59.99389 * 9 7 6 11 11 C 1.50702 * 109.46905 * 299.99796 * 9 7 6 12 12 H 1.07996 * 119.99688 * 124.61879 * 11 9 7 13 13 C 1.37872 * 120.00069 * 304.34171 * 11 9 7 14 14 N 1.31510 * 120.00069 * 6.38609 * 13 11 9 15 15 Si 1.86795 * 120.00120 * 186.38498 * 13 11 9 16 16 H 1.48504 * 109.47424 * 90.00040 * 15 13 11 17 17 H 1.48502 * 109.47181 * 209.99985 * 15 13 11 18 18 H 1.48502 * 109.47034 * 330.00050 * 15 13 11 19 19 C 1.50701 * 109.47170 * 179.97438 * 9 7 6 20 20 C 1.38231 * 119.99779 * 313.11294 * 19 9 7 21 21 C 1.38236 * 120.00018 * 179.81137 * 20 19 9 22 22 C 1.38237 * 119.99738 * 0.39907 * 21 20 19 23 23 C 1.38238 * 119.99920 * 359.84907 * 22 21 20 24 24 C 1.38226 * 119.99983 * 133.38633 * 19 9 7 25 25 H 1.08997 * 109.47493 * 300.00114 * 1 2 3 26 26 H 1.09005 * 109.47264 * 60.00351 * 1 2 3 27 27 H 1.08997 * 109.47107 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47493 * 239.99886 * 2 1 3 29 29 H 1.08997 * 109.47097 * 59.99643 * 3 2 1 30 30 H 1.09003 * 109.47131 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46864 * 299.99580 * 3 2 1 32 32 H 1.09007 * 109.46990 * 55.00656 * 4 2 1 33 33 H 1.09002 * 109.47711 * 295.00361 * 4 2 1 34 34 H 0.97002 * 119.99920 * 0.02562 * 6 5 4 35 35 H 0.97000 * 120.00092 * 179.97438 * 14 13 11 36 36 H 1.07999 * 120.00205 * 359.97438 * 20 19 9 37 37 H 1.07998 * 120.00319 * 180.22762 * 21 20 19 38 38 H 1.07999 * 120.00434 * 179.83562 * 22 21 20 39 39 H 1.08002 * 119.99971 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.99966 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 8 3.4641 -0.8237 1.1921 6 7 4.0396 -1.4794 2.3074 7 6 5.3756 -1.6420 2.3779 8 8 6.0850 -1.2272 1.4860 9 6 5.9881 -2.3404 3.5647 10 1 5.5953 -3.3550 3.6317 11 6 5.6463 -1.5854 4.8233 12 1 5.1574 -2.0930 5.6416 13 6 5.9628 -0.2479 4.9324 14 7 6.4476 0.3997 3.8955 15 14 5.7032 0.6442 6.5528 16 1 6.9338 0.5409 7.3776 17 1 5.4035 2.0744 6.2880 18 1 4.5659 0.0267 7.2812 19 6 7.4852 -2.3916 3.3999 20 6 8.0347 -2.7890 2.1954 21 6 9.4080 -2.8323 2.0429 22 6 10.2317 -2.4859 3.0977 23 6 9.6821 -2.0934 4.3039 24 6 8.3088 -2.0465 4.4550 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7515 -0.1582 2.1370 34 1 3.4722 -1.8115 3.0206 35 1 6.6700 1.3408 3.9721 36 1 7.3912 -3.0633 1.3726 37 1 9.8373 -3.1392 1.1007 38 1 11.3046 -2.5222 2.9795 39 1 10.3256 -1.8232 5.1280 40 1 7.8794 -1.7399 5.3973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001558956487.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:00 Heat of formation + Delta-G solvation = -36.410284 kcal Electronic energy + Delta-G solvation = -21861.321618 eV Core-core repulsion = 18642.124408 eV Total energy + Delta-G solvation = -3219.197210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63731 -39.30833 -38.33013 -35.92498 -35.50083 -32.82079 -32.23775 -31.38106 -28.91323 -28.08970 -26.85526 -25.72286 -22.99273 -22.52746 -21.53980 -20.80041 -19.03731 -18.61018 -17.33479 -17.02799 -16.91342 -16.61994 -15.92457 -15.47666 -15.36348 -15.18482 -14.88059 -14.38238 -14.10150 -14.00725 -13.77933 -13.67956 -13.41632 -13.05596 -13.00369 -12.74189 -12.53704 -12.32401 -12.20447 -12.11675 -11.78412 -11.74519 -11.55527 -11.42052 -11.20630 -10.70428 -10.22262 -9.48224 -9.40048 -9.14294 -8.10913 -6.30703 0.80865 0.89111 1.37073 1.44481 1.46405 1.53761 2.33453 2.50112 3.17426 3.28938 3.75740 3.84254 3.89860 4.22224 4.31418 4.35150 4.44007 4.48454 4.55178 4.57222 4.66798 4.70965 4.77058 4.92846 4.96027 4.98746 5.02734 5.12747 5.14803 5.33888 5.38518 5.42691 5.51377 5.68866 5.87706 5.89328 5.94625 6.27787 6.37966 6.50518 6.70601 6.94027 7.39411 7.95569 8.89274 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016905 B = 0.005867 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.899683 B = 4770.919290 C = 5898.605967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.145 4.145 4 C 0.032 3.968 5 O -0.186 6.186 6 N -0.592 5.592 7 C 0.560 3.440 8 O -0.577 6.577 9 C 0.062 3.938 10 H 0.080 0.920 11 C -0.541 4.541 12 H 0.081 0.919 13 C 0.039 3.961 14 N -0.874 5.874 15 Si 0.943 3.057 16 H -0.273 1.273 17 H -0.299 1.299 18 H -0.257 1.257 19 C -0.040 4.040 20 C -0.118 4.118 21 C -0.145 4.145 22 C -0.138 4.138 23 C -0.150 4.150 24 C -0.093 4.093 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.412 0.588 35 H 0.257 0.743 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.130 0.870 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 -3.756 -1.913 8.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 C -0.202 4.202 4 C -0.045 4.045 5 O -0.190 6.190 6 N -0.296 5.296 7 C 0.350 3.650 8 O -0.454 6.454 9 C 0.041 3.959 10 H 0.098 0.902 11 C -0.578 4.578 12 H 0.099 0.901 13 C -0.167 4.167 14 N -0.508 5.508 15 Si 0.769 3.231 16 H -0.199 1.199 17 H -0.226 1.226 18 H -0.180 1.180 19 C -0.041 4.041 20 C -0.136 4.136 21 C -0.163 4.163 22 C -0.156 4.156 23 C -0.168 4.168 24 C -0.111 4.111 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.148 0.852 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.708 -3.196 -2.792 7.938 hybrid contribution -0.539 0.956 0.987 1.476 sum -7.248 -2.240 -1.805 7.798 Atomic orbital electron populations 1.21733 0.91174 1.03091 1.03223 1.21099 0.97633 0.95837 0.96009 1.21796 0.99977 0.96021 1.02444 1.23262 0.80099 1.01063 1.00116 1.90497 1.21772 1.77273 1.29460 1.47545 1.06069 1.59561 1.16383 1.21604 0.78673 0.78011 0.86711 1.90499 1.60881 1.51937 1.42082 1.17936 0.89975 0.96370 0.91665 0.90178 1.20972 1.42206 0.94540 1.00103 0.90053 1.25673 0.94057 0.98364 0.98560 1.70216 1.40944 1.09491 1.30159 0.85775 0.79206 0.77289 0.80836 1.19894 1.22562 1.18048 1.19872 0.95772 0.95290 0.93154 1.21080 0.95508 1.00463 0.96585 1.21217 0.93214 1.02379 0.99500 1.21223 1.00120 1.01105 0.93182 1.21351 0.94950 1.01957 0.98516 1.21195 0.93051 0.97236 0.99594 0.91914 0.90479 0.91274 0.90791 0.92619 0.95367 0.90606 0.90849 0.92550 0.74686 0.93393 0.88354 0.85168 0.84161 0.85182 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 9.19 71.98 0.66 -1.61 16 2 C -0.09 -2.13 3.16 -10.79 -0.03 -2.16 16 3 C -0.15 -3.94 9.09 71.98 0.65 -3.28 16 4 C 0.03 0.94 5.61 71.98 0.40 1.34 16 5 O -0.19 -7.94 10.64 -21.38 -0.23 -8.16 16 6 N -0.59 -25.99 6.29 -173.53 -1.09 -27.09 16 7 C 0.56 28.52 5.43 87.66 0.48 28.99 16 8 O -0.58 -34.05 14.27 14.37 0.21 -33.84 16 9 C 0.06 2.96 2.78 -13.03 -0.04 2.92 16 10 H 0.08 3.38 8.14 -2.38 -0.02 3.36 16 11 C -0.54 -25.96 7.11 25.60 0.18 -25.78 16 12 H 0.08 3.65 7.82 -2.91 -0.02 3.63 16 13 C 0.04 1.95 3.90 84.65 0.33 2.28 16 14 N -0.87 -49.52 11.12 21.44 0.24 -49.29 16 15 Si 0.94 40.36 29.54 68.60 2.03 42.39 16 16 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.30 -13.33 7.11 99.48 0.71 -12.63 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 C -0.04 -1.92 4.63 -19.87 -0.09 -2.02 16 20 C -0.12 -5.45 8.21 22.27 0.18 -5.27 16 21 C -0.15 -5.77 10.05 22.27 0.22 -5.54 16 22 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 23 C -0.15 -5.95 10.05 22.27 0.22 -5.73 16 24 C -0.09 -4.28 8.46 22.27 0.19 -4.09 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.03 0.97 7.82 -2.39 -0.02 0.95 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.41 15.40 8.43 -92.71 -0.78 14.61 16 35 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.10 4.65 6.99 -2.91 -0.02 4.63 16 37 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 38 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 39 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 40 H 0.12 5.55 6.05 -2.91 -0.02 5.53 16 Total: -1.00 -68.21 333.75 4.98 -63.22 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: 0.24 Total: 37.58 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 3.59 Total: -24.81 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -0.85 Total: -76.37 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -0.02 Total: -42.01 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -68.21 4.98 -63.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001558956487.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.813 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds