Wall clock time and date at job start Mon Mar 30 2020 01:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 N 1.46900 * 109.47215 * 239.99712 * 2 1 3 5 5 C 1.53007 * 109.47222 * 119.99809 * 2 1 3 6 6 C 1.50697 * 109.46987 * 179.97438 * 5 2 1 7 7 O 1.20826 * 120.00427 * 0.02562 * 6 5 2 8 8 O 1.34236 * 119.99623 * 179.97438 * 6 5 2 9 9 C 1.45202 * 116.99861 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.38634 * 119.74914 * 269.72756 * 10 9 8 12 12 C 1.37619 * 120.24942 * 179.72155 * 11 10 9 13 13 C 1.40717 * 119.73953 * 0.57349 * 12 11 10 14 14 C 1.41400 * 120.23665 * 179.68462 * 13 12 11 15 15 H 1.08007 * 119.99684 * 155.31480 * 14 13 12 16 16 C 1.39939 * 120.00333 * 335.30310 * 14 13 12 17 17 N 1.30826 * 120.00025 * 342.23859 * 16 14 13 18 18 Si 1.86800 * 120.00117 * 162.23840 * 16 14 13 19 19 H 1.48494 * 109.47119 * 94.66408 * 18 16 14 20 20 H 1.48501 * 109.47377 * 214.66748 * 18 16 14 21 21 H 1.48501 * 109.47174 * 334.66670 * 18 16 14 22 22 C 1.40711 * 119.51509 * 359.69926 * 13 12 11 23 23 C 1.37617 * 119.74404 * 0.02562 * 22 13 12 24 24 H 1.08996 * 109.47578 * 299.99815 * 1 2 3 25 25 H 1.09001 * 109.47236 * 60.00151 * 1 2 3 26 26 H 1.08998 * 109.46854 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47004 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47120 * 299.99464 * 3 2 1 29 29 H 1.08997 * 109.47384 * 60.00192 * 3 2 1 30 30 H 1.00896 * 111.00235 * 300.00169 * 4 2 1 31 31 H 1.00898 * 111.00266 * 63.95652 * 4 2 1 32 32 H 1.09000 * 109.46802 * 59.99848 * 5 2 1 33 33 H 1.09003 * 109.47034 * 300.00236 * 5 2 1 34 34 H 1.08994 * 109.46999 * 300.00667 * 9 8 6 35 35 H 1.08996 * 109.46818 * 60.00402 * 9 8 6 36 36 H 1.08008 * 119.87481 * 359.97438 * 11 10 9 37 37 H 1.07995 * 120.12746 * 180.27730 * 12 11 10 38 38 H 0.97003 * 119.99697 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.12552 * 179.97438 * 22 13 12 40 40 H 1.07995 * 119.87428 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 6 3.5470 -0.7218 1.2489 7 8 4.1511 -0.1986 0.3428 8 8 4.2181 -1.3026 2.2559 9 6 5.6682 -1.2647 2.1901 10 6 6.2441 -1.9611 3.3961 11 6 6.5124 -1.2355 4.5465 12 6 7.0331 -1.8621 5.6557 13 6 7.3044 -3.2422 5.6148 14 6 7.8456 -3.8954 6.7461 15 1 7.6915 -4.9556 6.8827 16 6 8.5812 -3.1681 7.6886 17 7 9.0657 -1.9939 7.3757 18 14 8.8713 -3.8740 9.3936 19 1 10.1814 -4.5724 9.4239 20 1 8.8737 -2.7739 10.3911 21 1 7.7894 -4.8370 9.7214 22 6 7.0334 -3.9675 4.4398 23 6 6.5074 -3.3212 3.3446 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6961 -1.6480 -1.2227 31 1 1.7503 -0.1991 -2.0372 32 1 1.6766 -1.7489 1.2493 33 1 1.6766 -0.2074 2.1393 34 1 6.0040 -1.7696 1.2844 35 1 6.0041 -0.2279 2.1739 36 1 6.3082 -0.1753 4.5738 37 1 7.2371 -1.2958 6.5523 38 1 9.5753 -1.4897 8.0292 39 1 7.2382 -5.0270 4.3974 40 1 6.2990 -3.8757 2.4416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573484721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:48 Heat of formation + Delta-G solvation = -80.107845 kcal Electronic energy + Delta-G solvation = -20772.067137 eV Core-core repulsion = 17550.975059 eV Total energy + Delta-G solvation = -3221.092078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16284 -37.94079 -37.25883 -35.54972 -33.82298 -30.89098 -30.03965 -29.33816 -28.70124 -27.42334 -26.91122 -23.79898 -21.25823 -21.03406 -19.98053 -19.33506 -17.36602 -17.20038 -16.31491 -16.18241 -15.67495 -15.28816 -14.90873 -14.31698 -13.97721 -13.71279 -13.59679 -13.10507 -12.77278 -12.57192 -12.32212 -12.15748 -12.00088 -11.96980 -11.88532 -11.51083 -11.33360 -11.19291 -11.10563 -11.01500 -10.57781 -10.54713 -9.99451 -9.83958 -9.60492 -9.43554 -9.18330 -8.71878 -7.52512 -7.41543 -6.84211 -4.43163 2.51915 2.70583 2.99088 3.02975 3.04788 3.09816 3.48461 3.87829 4.28928 4.49107 4.55355 4.75997 4.92133 5.24378 5.28413 5.43832 5.46221 5.63636 5.66664 5.70741 5.76977 5.78872 5.79929 5.88575 6.18000 6.30164 6.34821 6.36502 6.89782 7.00396 7.04968 7.12793 7.22118 7.29981 7.33909 7.55085 7.78124 7.98853 8.05015 8.22538 8.34274 8.56951 8.81746 8.90121 10.10089 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042686 B = 0.002954 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.793209 B = 9476.082525 C = 9531.137461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.155 4.155 4 N -0.826 5.826 5 C -0.106 4.106 6 C 0.454 3.546 7 O -0.489 6.489 8 O -0.359 6.359 9 C 0.138 3.862 10 C -0.233 4.233 11 C -0.076 4.076 12 C -0.170 4.170 13 C 0.118 3.882 14 C -0.458 4.458 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.787 5.787 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.230 4.230 23 C -0.065 4.065 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.335 0.665 31 H 0.340 0.660 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.282 0.718 39 H 0.094 0.906 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.134 3.813 -9.097 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.033 3.967 3 C -0.212 4.212 4 N -0.356 5.356 5 C -0.144 4.144 6 C 0.296 3.704 7 O -0.377 6.377 8 O -0.276 6.276 9 C 0.066 3.934 10 C -0.234 4.234 11 C -0.095 4.095 12 C -0.189 4.189 13 C 0.115 3.885 14 C -0.487 4.487 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.412 5.412 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.250 4.250 23 C -0.083 4.083 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.153 0.847 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.006 4.302 -8.965 15.589 hybrid contribution -0.759 -0.347 0.471 0.958 sum -12.765 3.955 -8.494 15.835 Atomic orbital electron populations 1.22653 0.96631 1.02083 1.02661 1.20569 0.91300 0.94930 0.89857 1.22103 1.04909 0.93267 1.00945 1.58777 1.67577 1.05637 1.03609 1.21459 0.89801 1.03509 0.99630 1.23297 0.91221 0.75848 0.80045 1.90580 1.70218 1.41450 1.35414 1.86686 1.23815 1.71002 1.46139 1.21624 0.74667 0.99670 0.97441 1.18708 1.14244 0.94436 0.96009 1.20541 0.98516 0.97250 0.93203 1.21289 1.04032 0.95692 0.97913 1.17680 0.87560 0.92016 0.91203 1.19655 1.28337 0.96479 1.04196 0.90230 1.25961 0.93532 0.94418 1.00407 1.69830 1.24238 1.11783 1.35367 0.86288 0.79595 0.79707 0.81112 1.19494 1.19953 1.18331 1.20950 1.11351 0.98689 0.93975 1.20387 0.97838 0.93149 0.96936 0.91758 0.92297 0.92477 0.89008 0.93067 0.92760 0.85204 0.84706 0.88382 0.87843 0.92248 0.92275 0.89363 0.86320 0.90701 0.88759 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 8.76 37.16 0.33 -0.98 16 2 C 0.13 1.24 0.82 -131.60 -0.11 1.13 16 3 C -0.15 -1.66 8.41 37.16 0.31 -1.35 16 4 N -0.83 -8.36 7.67 0.74 0.01 -8.36 16 5 C -0.11 -1.20 5.03 -27.88 -0.14 -1.34 16 6 C 0.45 7.24 7.50 36.00 0.27 7.51 16 7 O -0.49 -8.71 12.63 -18.75 -0.24 -8.95 16 8 O -0.36 -6.69 10.20 -39.27 -0.40 -7.09 16 9 C 0.14 2.72 5.58 36.01 0.20 2.92 16 10 C -0.23 -5.26 5.54 -104.33 -0.58 -5.84 16 11 C -0.08 -1.81 9.67 -39.66 -0.38 -2.20 16 12 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 13 C 0.12 3.13 5.57 -106.82 -0.60 2.54 16 14 C -0.46 -11.98 9.05 -37.74 -0.34 -12.32 16 15 H 0.08 1.99 7.91 -52.48 -0.41 1.58 16 16 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 17 N -0.79 -20.05 10.97 55.55 0.61 -19.44 16 18 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 19 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 C -0.23 -5.66 9.80 -38.88 -0.38 -6.04 16 23 C -0.06 -1.48 9.67 -39.66 -0.38 -1.86 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 1.28 5.52 -51.93 -0.29 0.99 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.34 2.93 9.00 -39.29 -0.35 2.58 16 31 H 0.34 2.90 8.98 -39.29 -0.35 2.54 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 35 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 36 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 37 H 0.12 3.15 6.18 -52.49 -0.32 2.83 16 38 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -28.95 334.82 -8.17 -37.12 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.93 Total: 9.23 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.23 Total: -20.79 kcal Atomic # 7 Polarization: -28.41 SS G_CDS: 0.61 Total: -27.79 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.64 Total: -16.04 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.95 -8.17 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573484721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.992 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds