Wall clock time and date at job start Mon Mar 30 2020 01:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47012 * 2 1 4 4 N 1.46900 * 109.47215 * 239.99712 * 2 1 3 5 5 C 1.53007 * 109.47222 * 119.99809 * 2 1 3 6 6 C 1.50697 * 109.46987 * 179.97438 * 5 2 1 7 7 O 1.20826 * 120.00427 * 0.02562 * 6 5 2 8 8 O 1.34236 * 119.99623 * 179.97438 * 6 5 2 9 9 C 1.45202 * 116.99861 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47010 * 180.02562 * 9 8 6 11 11 C 1.38634 * 119.74914 * 269.72756 * 10 9 8 12 12 C 1.37619 * 120.24942 * 179.72155 * 11 10 9 13 13 C 1.40717 * 119.73953 * 0.57349 * 12 11 10 14 14 C 1.41400 * 120.23665 * 179.68462 * 13 12 11 15 15 H 1.08007 * 119.99684 * 155.31480 * 14 13 12 16 16 C 1.39939 * 120.00333 * 335.30310 * 14 13 12 17 17 N 1.30826 * 120.00025 * 342.23859 * 16 14 13 18 18 Si 1.86800 * 120.00117 * 162.23840 * 16 14 13 19 19 H 1.48494 * 109.47119 * 94.66408 * 18 16 14 20 20 H 1.48501 * 109.47377 * 214.66748 * 18 16 14 21 21 H 1.48501 * 109.47174 * 334.66670 * 18 16 14 22 22 C 1.40711 * 119.51509 * 359.69926 * 13 12 11 23 23 C 1.37617 * 119.74404 * 0.02562 * 22 13 12 24 24 H 1.08996 * 109.47578 * 299.99815 * 1 2 3 25 25 H 1.09001 * 109.47236 * 60.00151 * 1 2 3 26 26 H 1.08998 * 109.46854 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47004 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47120 * 299.99464 * 3 2 1 29 29 H 1.08997 * 109.47384 * 60.00192 * 3 2 1 30 30 H 1.00896 * 111.00235 * 300.00169 * 4 2 1 31 31 H 1.00898 * 111.00266 * 63.95652 * 4 2 1 32 32 H 1.09000 * 109.46802 * 59.99848 * 5 2 1 33 33 H 1.09003 * 109.47034 * 300.00236 * 5 2 1 34 34 H 1.08994 * 109.46999 * 300.00667 * 9 8 6 35 35 H 1.08996 * 109.46818 * 60.00402 * 9 8 6 36 36 H 1.08008 * 119.87481 * 359.97438 * 11 10 9 37 37 H 1.07995 * 120.12746 * 180.27730 * 12 11 10 38 38 H 0.97003 * 119.99697 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.12552 * 179.97438 * 22 13 12 40 40 H 1.07995 * 119.87428 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0400 -0.7212 1.2493 6 6 3.5470 -0.7218 1.2489 7 8 4.1511 -0.1986 0.3428 8 8 4.2181 -1.3026 2.2559 9 6 5.6682 -1.2647 2.1901 10 6 6.2441 -1.9611 3.3961 11 6 6.5124 -1.2355 4.5465 12 6 7.0331 -1.8621 5.6557 13 6 7.3044 -3.2422 5.6148 14 6 7.8456 -3.8954 6.7461 15 1 7.6915 -4.9556 6.8827 16 6 8.5812 -3.1681 7.6886 17 7 9.0657 -1.9939 7.3757 18 14 8.8713 -3.8740 9.3936 19 1 10.1814 -4.5724 9.4239 20 1 8.8737 -2.7739 10.3911 21 1 7.7894 -4.8370 9.7214 22 6 7.0334 -3.9675 4.4398 23 6 6.5074 -3.3212 3.3446 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6961 -1.6480 -1.2227 31 1 1.7503 -0.1991 -2.0372 32 1 1.6766 -1.7489 1.2493 33 1 1.6766 -0.2074 2.1393 34 1 6.0040 -1.7696 1.2844 35 1 6.0041 -0.2279 2.1739 36 1 6.3082 -0.1753 4.5738 37 1 7.2371 -1.2958 6.5523 38 1 9.5753 -1.4897 8.0292 39 1 7.2382 -5.0270 4.3974 40 1 6.2990 -3.8757 2.4416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573484721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:47 Heat of formation + Delta-G solvation = -96.297909 kcal Electronic energy + Delta-G solvation = -20772.769191 eV Core-core repulsion = 17550.975059 eV Total energy + Delta-G solvation = -3221.794132 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.43668 -39.55827 -38.47023 -36.87238 -35.65745 -32.63684 -31.24334 -30.94677 -29.71814 -28.54456 -28.11111 -25.54258 -22.95754 -22.50313 -21.75456 -20.21322 -19.26611 -18.46566 -17.60097 -17.44382 -17.08244 -16.55167 -16.12006 -15.72435 -15.61086 -15.28399 -14.69570 -14.31590 -14.02745 -13.94851 -13.85789 -13.52662 -13.18392 -13.05479 -13.04246 -12.82651 -12.78470 -12.68901 -12.39904 -12.19756 -12.18953 -11.80778 -11.53950 -11.51350 -11.26468 -11.04854 -10.98224 -9.45879 -9.42097 -9.31947 -8.68594 -6.38920 0.76291 1.10979 1.38869 1.44818 1.46381 1.54610 2.07232 2.20246 2.73815 3.54048 3.69455 3.72457 3.91719 4.13396 4.14087 4.15870 4.27192 4.48814 4.55085 4.57385 4.61696 4.64717 4.76672 4.95285 4.95795 5.00396 5.08519 5.12449 5.25063 5.30643 5.39665 5.43354 5.65501 5.78378 5.91796 6.05804 6.15289 6.32204 6.38342 6.64463 6.69131 6.88970 6.97262 7.04537 8.28635 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042686 B = 0.002954 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.793209 B = 9476.082525 C = 9531.137461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.128 3.872 3 C -0.155 4.155 4 N -0.844 5.844 5 C -0.103 4.103 6 C 0.450 3.550 7 O -0.509 6.509 8 O -0.371 6.371 9 C 0.145 3.855 10 C -0.229 4.229 11 C -0.082 4.082 12 C -0.192 4.192 13 C 0.087 3.913 14 C -0.494 4.494 15 H 0.080 0.920 16 C 0.035 3.965 17 N -0.820 5.820 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.265 1.265 21 H -0.258 1.258 22 C -0.244 4.244 23 C -0.067 4.067 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.343 0.657 31 H 0.347 0.653 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.290 0.710 39 H 0.103 0.897 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.775 3.709 -9.435 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.035 3.965 3 C -0.212 4.212 4 N -0.376 5.376 5 C -0.141 4.141 6 C 0.293 3.707 7 O -0.397 6.397 8 O -0.289 6.289 9 C 0.072 3.928 10 C -0.230 4.230 11 C -0.100 4.100 12 C -0.212 4.212 13 C 0.085 3.915 14 C -0.523 4.523 15 H 0.098 0.902 16 C -0.181 4.181 17 N -0.445 5.445 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.181 1.181 22 C -0.264 4.264 23 C -0.085 4.085 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.156 0.844 31 H 0.161 0.839 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.665 4.204 -9.332 17.073 hybrid contribution -0.302 -0.241 0.405 0.559 sum -13.967 3.963 -8.927 17.043 Atomic orbital electron populations 1.22543 0.94108 1.03016 1.03452 1.20573 0.93001 0.93861 0.89052 1.22069 1.02598 0.94496 1.02036 1.58756 1.68321 1.06363 1.04164 1.21677 0.85906 1.05169 1.01314 1.24233 0.92850 0.74702 0.78898 1.90587 1.70993 1.42133 1.35996 1.86662 1.22795 1.71855 1.47619 1.21383 0.75801 0.99470 0.96102 1.19027 1.13033 0.94523 0.96396 1.20770 0.97945 0.98248 0.93061 1.21260 1.05718 0.95837 0.98351 1.18041 0.88521 0.92668 0.92303 1.19914 1.29932 0.96866 1.05561 0.90225 1.26832 0.92599 0.94614 1.04052 1.69876 1.24703 1.13016 1.36932 0.85156 0.79582 0.79040 0.75733 1.18633 1.18964 1.18120 1.21165 1.11808 0.99294 0.94119 1.20692 0.96886 0.93518 0.97387 0.91045 0.91460 0.91488 0.92428 0.91974 0.91774 0.84398 0.83852 0.86600 0.86069 0.91585 0.92010 0.87676 0.87799 0.89892 0.87889 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 8.76 71.98 0.63 -1.28 16 2 C 0.13 2.20 0.82 3.53 0.00 2.20 16 3 C -0.15 -3.06 8.41 71.98 0.61 -2.45 16 4 N -0.84 -15.47 7.67 -151.56 -1.16 -16.63 16 5 C -0.10 -2.07 5.03 29.85 0.15 -1.92 16 6 C 0.45 13.68 7.50 71.23 0.53 14.21 16 7 O -0.51 -17.68 12.63 21.96 0.28 -17.41 16 8 O -0.37 -13.32 10.20 -51.47 -0.53 -13.84 16 9 C 0.15 5.55 5.58 71.24 0.40 5.95 16 10 C -0.23 -10.20 5.54 -19.68 -0.11 -10.31 16 11 C -0.08 -3.91 9.67 22.22 0.21 -3.69 16 12 C -0.19 -10.26 8.70 22.73 0.20 -10.07 16 13 C 0.09 4.75 5.57 -21.29 -0.12 4.63 16 14 C -0.49 -26.55 9.05 23.46 0.21 -26.34 16 15 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 16 C 0.03 1.74 5.14 85.25 0.44 2.18 16 17 N -0.82 -42.65 10.97 21.82 0.24 -42.41 16 18 Si 0.98 37.58 29.59 68.60 2.03 39.61 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 20 H -0.27 -9.62 7.11 99.48 0.71 -8.92 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 22 C -0.24 -12.15 9.80 22.73 0.22 -11.92 16 23 C -0.07 -3.00 9.67 22.22 0.21 -2.79 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 1.56 5.52 -2.39 -0.01 1.55 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.34 5.25 9.00 -89.70 -0.81 4.44 16 31 H 0.35 5.29 8.98 -89.70 -0.81 4.49 16 32 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 35 H 0.06 2.31 8.07 -2.39 -0.02 2.29 16 36 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 37 H 0.10 5.75 6.18 -2.91 -0.02 5.73 16 38 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 39 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -63.33 334.82 3.89 -59.44 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.56 Total: 32.84 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 3.59 Total: -41.60 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -0.92 Total: -59.04 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.25 Total: -31.25 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -63.33 3.89 -59.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573484721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.861 kcal (2) G-P(sol) polarization free energy of solvation -63.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds