Wall clock time and date at job start Mon Mar 30 2020 01:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.50698 * 109.46644 * 240.00429 * 2 1 3 5 5 H 1.08010 * 119.99765 * 239.99771 * 4 2 1 6 6 C 1.37872 * 120.00736 * 59.99818 * 4 2 1 7 7 N 1.31523 * 119.99548 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00627 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47183 * 59.99833 * 8 6 4 10 10 H 1.48504 * 109.47670 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47006 * 300.00098 * 8 6 4 12 12 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 13 13 N 1.46905 * 109.47039 * 299.99787 * 12 2 1 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 C 1.38371 * 119.84306 * 269.72380 * 15 14 13 17 17 C 1.37953 * 120.14380 * 179.72427 * 16 15 14 18 18 C 1.39622 * 119.85135 * 0.57288 * 17 16 15 19 19 C 1.47723 * 120.15278 * 179.68522 * 18 17 16 20 20 O 1.21467 * 119.99911 * 180.02562 * 19 18 17 21 21 O 1.34718 * 119.99665 * 0.02562 * 19 18 17 22 22 C 1.39629 * 119.70091 * 359.70079 * 18 17 16 23 23 C 1.37957 * 119.84501 * 0.02562 * 22 18 17 24 24 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 25 25 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 26 26 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 29 29 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 30 30 H 0.97002 * 119.99722 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47393 * 180.02562 * 12 2 1 32 32 H 1.08998 * 109.47408 * 59.99713 * 12 2 1 33 33 H 1.00901 * 110.99869 * 56.04956 * 13 12 2 34 34 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 35 35 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 36 36 H 1.07993 * 119.92568 * 359.97438 * 16 15 14 37 37 H 1.07998 * 120.07187 * 180.27401 * 17 16 15 38 38 H 0.96704 * 116.99398 * 180.02562 * 21 19 18 39 39 H 1.07995 * 120.08207 * 179.97438 * 22 18 17 40 40 H 1.07996 * 119.91963 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3222 -1.1194 -4.0080 9 1 1.8278 -2.5197 -4.0083 10 1 1.8276 -0.4191 -5.2206 11 1 3.8073 -1.1188 -4.0079 12 6 2.0400 -0.7213 1.2491 13 7 1.5504 -0.0288 2.4486 14 6 2.0219 -0.6946 3.6702 15 6 1.5003 0.0419 4.8771 16 6 2.2441 1.0683 5.4319 17 6 1.7700 1.7505 6.5332 18 6 0.5422 1.3952 7.0952 19 6 0.0313 2.1166 8.2788 20 8 -1.0369 1.8050 8.7657 21 8 0.7503 3.1202 8.8180 22 6 -0.2005 0.3547 6.5336 23 6 0.2829 -0.3153 5.4288 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7079 1.1609 -3.4844 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.5438 0.0412 2.4402 34 1 1.6587 -1.7223 3.6872 35 1 3.1117 -0.6941 3.6868 36 1 3.1961 1.3386 4.9994 37 1 2.3494 2.5543 6.9627 38 1 0.3752 3.5623 9.5920 39 1 -1.1508 0.0746 6.9635 40 1 -0.2904 -1.1206 4.9938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588754981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:56 Heat of formation + Delta-G solvation = -74.507454 kcal Electronic energy + Delta-G solvation = -20761.088031 eV Core-core repulsion = 17540.238803 eV Total energy + Delta-G solvation = -3220.849227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59307 -39.06135 -36.90697 -36.31660 -34.30298 -31.89753 -31.15508 -30.30685 -26.52627 -25.58460 -25.21788 -23.83166 -22.98755 -22.37958 -20.85656 -18.50112 -18.35655 -17.64326 -16.16386 -15.83835 -15.64991 -15.44796 -14.90968 -14.58361 -14.30385 -14.04040 -13.69310 -13.44916 -12.97978 -12.75873 -12.35446 -12.20872 -11.96667 -11.79228 -11.51006 -11.17038 -11.10916 -10.99610 -10.82182 -10.66534 -10.60677 -10.20045 -10.08168 -9.41145 -9.21111 -9.13462 -8.96355 -8.64944 -8.30537 -7.79905 -5.92791 -4.03612 0.51893 1.24723 2.35462 2.78601 3.31464 3.36609 3.38859 3.62030 4.42183 4.58973 4.69411 4.80999 4.87796 5.07410 5.22501 5.27103 5.32637 5.57676 5.62841 5.82810 5.90141 6.07211 6.16762 6.23412 6.27652 6.32482 6.50550 6.68280 6.71009 6.86005 7.04465 7.14016 7.35452 7.42724 7.64520 7.65074 7.73791 7.80315 7.87960 8.18648 8.32264 8.53321 8.97618 9.61552 11.07702 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.002960 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.937051 B = 9458.461878 C = 9504.148730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.070 3.930 3 C -0.119 4.119 4 C -0.509 4.509 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.075 3.925 13 N -0.680 5.680 14 C 0.087 3.913 15 C -0.030 4.030 16 C -0.113 4.113 17 C -0.061 4.061 18 C -0.140 4.140 19 C 0.529 3.471 20 O -0.519 6.519 21 O -0.513 6.513 22 C -0.053 4.053 23 C -0.129 4.129 24 H 0.010 0.990 25 H 0.084 0.916 26 H 0.019 0.981 27 H 0.018 0.982 28 H 0.074 0.926 29 H 0.020 0.980 30 H 0.259 0.741 31 H 0.058 0.942 32 H 0.015 0.985 33 H 0.340 0.660 34 H 0.036 0.964 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.413 0.587 39 H 0.135 0.865 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.629 1.305 18.816 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.069 3.931 3 C -0.177 4.177 4 C -0.547 4.547 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.204 1.204 12 C -0.053 4.053 13 N -0.312 5.312 14 C -0.042 4.042 15 C -0.031 4.031 16 C -0.132 4.132 17 C -0.079 4.079 18 C -0.142 4.142 19 C 0.375 3.625 20 O -0.409 6.409 21 O -0.324 6.324 22 C -0.071 4.071 23 C -0.147 4.147 24 H 0.029 0.971 25 H 0.102 0.898 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.093 0.907 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.159 0.841 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.271 0.729 39 H 0.153 0.847 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.942 1.596 18.434 18.527 hybrid contribution -0.496 -0.994 -0.357 1.167 sum 0.446 0.603 18.077 18.093 Atomic orbital electron populations 1.21844 0.98517 0.98373 1.00347 1.18083 0.92106 0.93072 0.89834 1.21642 0.97775 0.98168 1.00125 1.21068 1.31313 1.11874 0.90488 0.93034 1.24884 0.95027 0.94935 0.98699 1.69827 1.36694 1.22730 1.23068 0.86714 0.79188 0.79739 0.82626 1.20471 1.21350 1.20391 1.22204 0.99064 0.94472 0.89602 1.60682 1.16639 1.53395 1.00500 1.21021 1.00656 0.94440 0.88113 1.20310 0.93504 0.94461 0.94814 1.21103 1.00962 0.95477 0.95614 1.21448 0.93874 0.97981 0.94593 1.18980 0.98046 1.00370 0.96786 1.20988 0.81567 0.77190 0.82794 1.90877 1.22654 1.65509 1.61874 1.84574 1.52877 1.47082 1.47896 1.21197 0.98880 0.92675 0.94374 1.21069 0.96181 1.01082 0.96395 0.97061 0.89776 0.96204 0.96290 0.90742 0.96096 0.93098 0.92363 0.96684 0.84105 0.94585 0.90134 0.84756 0.84570 0.72892 0.84692 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 7.92 37.16 0.29 -2.79 16 2 C 0.07 1.64 0.57 -155.66 -0.09 1.55 16 3 C -0.12 -2.86 8.09 37.16 0.30 -2.56 16 4 C -0.51 -13.47 8.01 -34.44 -0.28 -13.75 16 5 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.88 -24.29 9.35 55.43 0.52 -23.77 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.07 1.49 4.59 -3.82 -0.02 1.47 16 13 N -0.68 -11.43 5.70 -115.06 -0.66 -12.08 16 14 C 0.09 1.16 5.81 -4.98 -0.03 1.13 16 15 C -0.03 -0.37 5.40 -104.53 -0.56 -0.93 16 16 C -0.11 -1.28 9.68 -39.64 -0.38 -1.66 16 17 C -0.06 -0.64 9.62 -39.17 -0.38 -1.02 16 18 C -0.14 -1.61 5.87 -104.99 -0.62 -2.23 16 19 C 0.53 5.95 8.27 34.61 0.29 6.23 16 20 O -0.52 -7.15 17.13 -19.24 -0.33 -7.48 16 21 O -0.51 -4.14 12.68 -40.54 -0.51 -4.65 16 22 C -0.05 -0.60 9.60 -39.17 -0.38 -0.98 16 23 C -0.13 -1.46 9.68 -39.64 -0.38 -1.84 16 24 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 25 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 29 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.34 5.75 6.76 -39.29 -0.27 5.49 16 34 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.14 1.20 7.61 -52.49 -0.40 0.80 16 38 H 0.41 1.43 9.11 45.56 0.42 1.85 16 39 H 0.14 1.44 7.65 -52.49 -0.40 1.03 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -29.86 332.33 -8.25 -38.11 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -4.94 Total: 4.71 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -2.32 Total: -15.71 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: -0.14 Total: -35.86 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.84 Total: -12.13 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.86 -8.25 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.395 kcal (2) G-P(sol) polarization free energy of solvation -29.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds