Wall clock time and date at job start Mon Mar 30 2020 01:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.50698 * 109.46644 * 240.00429 * 2 1 3 5 5 H 1.08010 * 119.99765 * 239.99771 * 4 2 1 6 6 C 1.37872 * 120.00736 * 59.99818 * 4 2 1 7 7 N 1.31523 * 119.99548 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00627 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47183 * 59.99833 * 8 6 4 10 10 H 1.48504 * 109.47670 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47006 * 300.00098 * 8 6 4 12 12 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 13 13 N 1.46905 * 109.47039 * 299.99787 * 12 2 1 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 C 1.38371 * 119.84306 * 269.72380 * 15 14 13 17 17 C 1.37953 * 120.14380 * 179.72427 * 16 15 14 18 18 C 1.39622 * 119.85135 * 0.57288 * 17 16 15 19 19 C 1.47723 * 120.15278 * 179.68522 * 18 17 16 20 20 O 1.21467 * 119.99911 * 180.02562 * 19 18 17 21 21 O 1.34718 * 119.99665 * 0.02562 * 19 18 17 22 22 C 1.39629 * 119.70091 * 359.70079 * 18 17 16 23 23 C 1.37957 * 119.84501 * 0.02562 * 22 18 17 24 24 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 25 25 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 26 26 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 29 29 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 30 30 H 0.97002 * 119.99722 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47393 * 180.02562 * 12 2 1 32 32 H 1.08998 * 109.47408 * 59.99713 * 12 2 1 33 33 H 1.00901 * 110.99869 * 56.04956 * 13 12 2 34 34 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 35 35 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 36 36 H 1.07993 * 119.92568 * 359.97438 * 16 15 14 37 37 H 1.07998 * 120.07187 * 180.27401 * 17 16 15 38 38 H 0.96704 * 116.99398 * 180.02562 * 21 19 18 39 39 H 1.07995 * 120.08207 * 179.97438 * 22 18 17 40 40 H 1.07996 * 119.91963 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3222 -1.1194 -4.0080 9 1 1.8278 -2.5197 -4.0083 10 1 1.8276 -0.4191 -5.2206 11 1 3.8073 -1.1188 -4.0079 12 6 2.0400 -0.7213 1.2491 13 7 1.5504 -0.0288 2.4486 14 6 2.0219 -0.6946 3.6702 15 6 1.5003 0.0419 4.8771 16 6 2.2441 1.0683 5.4319 17 6 1.7700 1.7505 6.5332 18 6 0.5422 1.3952 7.0952 19 6 0.0313 2.1166 8.2788 20 8 -1.0369 1.8050 8.7657 21 8 0.7503 3.1202 8.8180 22 6 -0.2005 0.3547 6.5336 23 6 0.2829 -0.3153 5.4288 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7079 1.1609 -3.4844 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.5438 0.0412 2.4402 34 1 1.6587 -1.7223 3.6872 35 1 3.1117 -0.6941 3.6868 36 1 3.1961 1.3386 4.9994 37 1 2.3494 2.5543 6.9627 38 1 0.3752 3.5623 9.5920 39 1 -1.1508 0.0746 6.9635 40 1 -0.2904 -1.1206 4.9938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588754981.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:56 Heat of formation + Delta-G solvation = -92.340369 kcal Electronic energy + Delta-G solvation = -20761.861324 eV Core-core repulsion = 17540.238803 eV Total energy + Delta-G solvation = -3221.622521 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43198 -39.96413 -38.49207 -37.11333 -35.76613 -33.44027 -32.00180 -31.74259 -27.69979 -27.48340 -27.20685 -25.17818 -23.94459 -23.38713 -21.72909 -20.32050 -19.16066 -18.49243 -17.90699 -17.13138 -16.67211 -16.50286 -16.29499 -15.80166 -15.54890 -15.24986 -14.87564 -14.46494 -14.32704 -14.07435 -13.88332 -13.46121 -13.35435 -13.00815 -12.86890 -12.65937 -12.59296 -12.50552 -12.28726 -12.11309 -12.05940 -11.95759 -11.70432 -11.28318 -10.94373 -10.58634 -10.32331 -9.97841 -9.93539 -9.14984 -7.94968 -6.11975 -0.36025 0.40520 1.44827 1.45750 1.48871 1.52339 2.06447 2.47800 2.74154 3.27308 3.55253 3.80730 3.84640 4.00322 4.13724 4.36463 4.40815 4.56676 4.61362 4.72781 4.74845 4.87323 4.91071 5.05712 5.07510 5.19540 5.24518 5.31446 5.33832 5.45663 5.54494 5.56545 5.61402 5.71939 5.79532 5.85813 6.16981 6.25926 6.36325 6.50422 6.62808 6.95114 6.98217 7.55850 9.02890 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.002960 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.937051 B = 9458.461878 C = 9504.148730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.060 3.940 3 C -0.106 4.106 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.943 3.057 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.089 3.911 13 N -0.683 5.683 14 C 0.091 3.909 15 C -0.041 4.041 16 C -0.117 4.117 17 C -0.056 4.056 18 C -0.151 4.151 19 C 0.535 3.465 20 O -0.551 6.551 21 O -0.503 6.503 22 C -0.061 4.061 23 C -0.129 4.129 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.017 0.983 27 H 0.012 0.988 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.257 0.743 31 H 0.054 0.946 32 H 0.013 0.987 33 H 0.339 0.661 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.433 0.567 39 H 0.138 0.862 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 1.231 19.966 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.059 3.941 3 C -0.163 4.163 4 C -0.566 4.566 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.039 4.039 13 N -0.315 5.315 14 C -0.038 4.038 15 C -0.041 4.041 16 C -0.136 4.136 17 C -0.074 4.074 18 C -0.152 4.152 19 C 0.381 3.619 20 O -0.443 6.443 21 O -0.317 6.317 22 C -0.079 4.079 23 C -0.148 4.148 24 H 0.051 0.949 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.031 0.969 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.031 0.969 33 H 0.158 0.842 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.295 0.705 39 H 0.156 0.844 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.523 1.537 19.612 19.731 hybrid contribution -0.654 -0.915 -0.628 1.288 sum 0.870 0.623 18.984 19.014 Atomic orbital electron populations 1.21677 0.98318 0.98080 0.99923 1.18136 0.92292 0.92872 0.90777 1.21469 0.97147 0.98428 0.99303 1.21438 1.31241 1.11949 0.91941 0.93502 1.25536 0.95369 0.95624 1.01190 1.69970 1.37427 1.23650 1.23295 0.85850 0.78687 0.78800 0.79644 1.20083 1.21298 1.20076 1.21846 0.98615 0.94001 0.89470 1.60578 1.16556 1.53626 1.00706 1.21017 1.01003 0.94802 0.86954 1.20241 0.94091 0.95088 0.94730 1.21275 1.01311 0.95209 0.95780 1.21620 0.93557 0.98107 0.94128 1.19180 0.98460 1.00516 0.97081 1.20943 0.81079 0.77332 0.82518 1.90868 1.24018 1.66615 1.62836 1.84524 1.52284 1.46084 1.48794 1.21311 0.99169 0.92886 0.94512 1.21195 0.96015 1.01280 0.96272 0.94850 0.92731 0.96338 0.96920 0.93539 0.94729 0.93383 0.92772 0.96874 0.84167 0.93693 0.89555 0.83817 0.82689 0.70473 0.84407 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 7.92 71.98 0.57 -5.04 16 2 C 0.06 2.79 0.57 -52.93 -0.03 2.76 16 3 C -0.11 -5.03 8.09 71.98 0.58 -4.45 16 4 C -0.53 -27.85 8.01 25.60 0.21 -27.65 16 5 H 0.05 2.46 7.74 -2.91 -0.02 2.43 16 6 C 0.02 1.17 5.15 84.65 0.44 1.60 16 7 N -0.90 -50.16 9.35 21.45 0.20 -49.96 16 8 Si 0.94 42.80 29.54 68.60 2.03 44.83 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 10 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.09 3.46 4.59 86.30 0.40 3.85 16 13 N -0.68 -21.72 5.70 -517.93 -2.95 -24.67 16 14 C 0.09 2.24 5.81 85.56 0.50 2.73 16 15 C -0.04 -0.91 5.40 -19.80 -0.11 -1.02 16 16 C -0.12 -2.40 9.68 22.23 0.22 -2.18 16 17 C -0.06 -1.06 9.62 22.54 0.22 -0.85 16 18 C -0.15 -3.21 5.87 -20.10 -0.12 -3.33 16 19 C 0.53 11.16 8.27 70.33 0.58 11.74 16 20 O -0.55 -14.64 17.13 19.94 0.34 -14.30 16 21 O -0.50 -6.91 12.68 -56.28 -0.71 -7.63 16 22 C -0.06 -1.30 9.60 22.54 0.22 -1.08 16 23 C -0.13 -2.71 9.68 22.23 0.22 -2.49 16 24 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 25 H 0.05 2.84 6.07 -2.38 -0.01 2.82 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 2.47 6.07 -2.38 -0.01 2.45 16 29 H 0.03 1.50 7.60 -2.39 -0.02 1.48 16 30 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 31 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.34 10.84 6.76 -89.69 -0.61 10.24 16 34 H 0.04 1.05 8.08 -2.39 -0.02 1.03 16 35 H 0.09 2.03 8.08 -2.39 -0.02 2.02 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.16 2.28 7.61 -2.91 -0.02 2.26 16 38 H 0.43 1.94 9.11 -74.05 -0.67 1.27 16 39 H 0.14 2.82 7.65 -2.91 -0.02 2.80 16 40 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -62.78 332.33 2.55 -60.23 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -0.22 Total: 16.89 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 3.88 Total: -25.39 kcal Atomic # 7 Polarization: -71.88 SS G_CDS: -2.75 Total: -74.63 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.37 Total: -21.93 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -62.78 2.55 -60.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754981.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.112 kcal (2) G-P(sol) polarization free energy of solvation -62.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds