Wall clock time and date at job start Mon Mar 30 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47290 * 2 1 4 4 H 1.08995 * 109.47299 * 179.47889 * 3 2 1 5 5 C 1.50699 * 109.47305 * 59.47567 * 3 2 1 6 6 H 1.07996 * 120.00229 * 240.00376 * 5 3 2 7 7 C 1.37876 * 119.99534 * 60.00017 * 5 3 2 8 8 N 1.31514 * 119.99749 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00449 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47135 * 269.99770 * 9 7 5 11 11 H 1.48507 * 109.46715 * 29.99727 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99535 * 9 7 5 13 13 N 1.46905 * 109.46934 * 299.47828 * 3 2 1 14 14 C 1.46895 * 111.00151 * 274.50475 * 13 3 2 15 15 C 1.50701 * 109.47186 * 174.90486 * 14 13 3 16 16 C 1.38384 * 119.84699 * 89.99909 * 15 14 13 17 17 C 1.37923 * 120.15139 * 179.97438 * 16 15 14 18 18 C 1.39645 * 119.84539 * 0.02562 * 17 16 15 19 19 C 1.47736 * 120.15015 * 179.97438 * 18 17 16 20 20 O 1.21465 * 119.99718 * 174.09125 * 19 18 17 21 21 O 1.34709 * 119.99754 * 354.09355 * 19 18 17 22 22 C 1.39610 * 119.70431 * 359.97438 * 18 17 16 23 23 C 1.50702 * 120.07784 * 180.02562 * 22 18 17 24 24 C 1.37969 * 119.84206 * 359.73492 * 22 18 17 25 25 H 1.08998 * 109.47221 * 183.41715 * 1 2 3 26 26 H 1.08999 * 109.47573 * 303.42152 * 1 2 3 27 27 H 1.09006 * 109.46974 * 63.41773 * 1 2 3 28 28 H 1.09003 * 109.47128 * 239.99872 * 2 1 3 29 29 H 1.09000 * 109.47014 * 119.99807 * 2 1 3 30 30 H 0.97002 * 120.00098 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99938 * 150.54516 * 13 3 2 32 32 H 1.09001 * 109.47319 * 294.90548 * 14 13 3 33 33 H 1.09001 * 109.47045 * 54.90202 * 14 13 3 34 34 H 1.08007 * 119.92711 * 0.02562 * 16 15 14 35 35 H 1.07997 * 120.07987 * 179.97438 * 17 16 15 36 36 H 0.96703 * 116.99669 * 179.97438 * 21 19 18 37 37 H 1.09006 * 109.46680 * 83.40040 * 23 22 18 38 38 H 1.08999 * 109.47097 * 203.39278 * 23 22 18 39 39 H 1.08991 * 109.47268 * 323.39961 * 23 22 18 40 40 H 1.07996 * 119.92110 * 180.29472 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0093 5 6 1.5272 2.1567 1.2239 6 1 0.9072 3.0345 1.1168 7 6 1.8495 1.6894 2.4804 8 7 1.4023 2.3130 3.5485 9 14 2.9224 0.1716 2.6657 10 1 2.0639 -1.0394 2.7072 11 1 3.8529 0.0794 1.5120 12 1 3.7034 0.2682 3.9250 13 7 1.5607 2.1314 -1.2057 14 6 2.4605 1.8916 -2.3419 15 6 1.8736 2.5070 -3.5860 16 6 2.1790 3.8155 -3.9170 17 6 1.6459 4.3849 -5.0545 18 6 0.7957 3.6379 -5.8726 19 6 0.2204 4.2412 -7.0923 20 8 -0.4309 3.5593 -7.8579 21 8 0.4182 5.5475 -7.3552 22 6 0.4917 2.3183 -5.5327 23 6 -0.4244 1.5043 -6.4097 24 6 1.0368 1.7594 -4.3951 25 1 -0.3633 -1.0258 0.0613 26 1 -0.3634 0.5660 0.8577 27 1 -0.3633 0.4599 -0.9191 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6294 1.9845 4.4325 31 1 1.4471 3.1196 -1.0366 32 1 3.4319 2.3418 -2.1373 33 1 2.5812 0.8184 -2.4895 34 1 2.8371 4.3920 -3.2837 35 1 1.8847 5.4063 -5.3116 36 1 0.0225 5.8970 -8.1654 37 1 0.1470 1.0761 -7.2333 38 1 -0.8718 0.7025 -5.8224 39 1 -1.2107 2.1455 -6.8078 40 1 0.8064 0.7373 -4.1335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:28 Heat of formation + Delta-G solvation = -68.345516 kcal Electronic energy + Delta-G solvation = -21147.711062 eV Core-core repulsion = 17927.129037 eV Total energy + Delta-G solvation = -3220.582026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.67644 -39.01236 -36.68599 -36.27785 -33.59990 -32.39766 -31.73983 -30.46215 -27.34850 -27.12099 -25.15538 -23.15424 -22.69822 -22.23677 -20.27361 -19.36526 -18.26054 -17.33658 -16.71204 -15.93368 -15.77683 -15.31098 -14.81852 -14.51011 -14.13804 -13.84513 -13.46875 -13.41084 -13.23170 -13.09768 -12.79436 -12.44040 -12.25333 -12.04949 -11.88072 -11.67402 -11.46389 -11.14491 -10.95599 -10.65798 -10.57471 -10.30132 -10.18567 -10.01079 -9.38447 -9.05253 -8.84644 -8.74526 -8.61586 -7.57073 -6.13752 -4.13038 0.64613 1.34991 2.44919 2.88169 3.24191 3.32873 3.35097 3.69764 4.34788 4.67270 4.76133 4.81346 4.98427 5.17328 5.26948 5.31458 5.41965 5.54717 5.68310 5.70874 5.75842 5.93881 6.00897 6.07859 6.12506 6.17803 6.22989 6.34251 6.43020 6.49758 6.63325 6.68004 6.84702 6.87483 7.06963 7.18422 7.45387 7.55799 7.73961 7.83038 8.24854 8.54679 8.90592 9.48242 10.98968 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032930 B = 0.003672 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.080367 B = 7624.331791 C = 7974.173353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.185 3.815 4 H 0.002 0.998 5 C -0.515 4.515 6 H 0.079 0.921 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.298 1.298 13 N -0.668 5.668 14 C 0.086 3.914 15 C -0.020 4.020 16 C -0.137 4.137 17 C -0.056 4.056 18 C -0.148 4.148 19 C 0.528 3.472 20 O -0.514 6.514 21 O -0.514 6.514 22 C -0.018 4.018 23 C -0.123 4.123 24 C -0.116 4.116 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.265 0.735 31 H 0.342 0.658 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.411 0.589 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 1.985 -19.291 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.077 3.923 4 H 0.019 0.981 5 C -0.553 4.553 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.225 1.225 13 N -0.300 5.300 14 C -0.044 4.044 15 C -0.020 4.020 16 C -0.156 4.156 17 C -0.075 4.075 18 C -0.149 4.149 19 C 0.374 3.626 20 O -0.405 6.405 21 O -0.326 6.326 22 C -0.018 4.018 23 C -0.179 4.179 24 C -0.134 4.134 25 H 0.039 0.961 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.160 0.840 32 H 0.054 0.946 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.152 0.848 36 H 0.269 0.731 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.108 0.892 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.213 1.142 -19.087 19.122 hybrid contribution 1.093 -0.035 0.043 1.094 sum 1.306 1.107 -19.044 19.121 Atomic orbital electron populations 1.21476 0.95483 0.98289 1.03030 1.21750 0.97467 0.98070 0.97803 1.19599 0.93099 0.91424 0.88203 0.98092 1.20994 1.32568 1.13306 0.88415 0.90309 1.24886 0.95431 0.96721 0.95790 1.69884 1.45188 1.40357 0.98017 0.86870 0.80874 0.83788 0.76786 1.20351 1.19423 1.22546 1.60523 1.47881 1.16658 1.04904 1.21044 0.94013 1.00244 0.89074 1.20318 0.93509 0.93419 0.94791 1.21090 1.01887 0.95176 0.97407 1.21344 0.93758 0.99346 0.93017 1.18794 1.05227 0.95061 0.95821 1.20998 0.76766 0.79424 0.85431 1.90829 1.38673 1.62145 1.48844 1.84583 1.73284 1.26737 1.47987 1.19998 0.94958 0.92012 0.94820 1.21105 0.99024 0.99433 0.98311 1.20923 0.97822 1.00828 0.93833 0.96112 0.91337 0.92671 0.95063 0.94079 0.92557 0.83979 0.94642 0.90501 0.85230 0.84769 0.73069 0.90765 0.91788 0.89179 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 9.52 37.16 0.35 -2.23 16 2 C -0.11 -2.41 5.28 -26.73 -0.14 -2.55 16 3 C 0.19 4.14 1.89 -68.86 -0.13 4.01 16 4 H 0.00 0.04 6.91 -51.93 -0.36 -0.32 16 5 C -0.51 -13.65 7.83 -34.44 -0.27 -13.92 16 6 H 0.08 2.27 7.85 -52.49 -0.41 1.86 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.58 13.96 55.43 0.77 -25.80 16 9 Si 0.89 21.48 24.37 -169.99 -4.14 17.34 16 10 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 11 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 12 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 13 N -0.67 -12.59 5.58 -109.22 -0.61 -13.20 16 14 C 0.09 1.32 5.58 -4.98 -0.03 1.29 16 15 C -0.02 -0.27 5.44 -104.53 -0.57 -0.84 16 16 C -0.14 -1.70 9.68 -39.64 -0.38 -2.08 16 17 C -0.06 -0.66 9.62 -39.17 -0.38 -1.03 16 18 C -0.15 -1.85 5.87 -104.98 -0.62 -2.46 16 19 C 0.53 6.18 8.21 34.61 0.28 6.46 16 20 O -0.51 -6.90 14.12 -19.24 -0.27 -7.17 16 21 O -0.51 -4.44 12.70 -40.52 -0.51 -4.96 16 22 C -0.02 -0.22 5.92 -104.21 -0.62 -0.84 16 23 C -0.12 -1.41 8.74 36.01 0.31 -1.10 16 24 C -0.12 -1.52 9.31 -39.64 -0.37 -1.89 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 1.59 7.08 -51.93 -0.37 1.22 16 27 H 0.05 1.08 7.73 -51.93 -0.40 0.68 16 28 H 0.03 0.59 7.41 -51.93 -0.38 0.21 16 29 H 0.04 0.93 3.28 -51.93 -0.17 0.76 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.34 6.54 8.26 -39.29 -0.32 6.22 16 32 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 33 H 0.08 1.17 7.30 -51.93 -0.38 0.79 16 34 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 35 H 0.13 1.30 7.63 -52.49 -0.40 0.90 16 36 H 0.41 1.62 9.11 45.56 0.42 2.04 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 39 H 0.09 1.13 5.85 -51.93 -0.30 0.82 16 40 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 324.80 15.07 4.89 4.89 Total: -1.00 -30.59 324.80 -7.31 -37.90 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.80 Total: 6.22 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -2.64 Total: -15.22 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.16 Total: -39.00 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.79 Total: -12.13 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.14 Total: 17.34 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.59 -7.31 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.446 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds