Wall clock time and date at job start Mon Mar 30 2020 02:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47290 * 2 1 4 4 H 1.08995 * 109.47299 * 179.47889 * 3 2 1 5 5 C 1.50699 * 109.47305 * 59.47567 * 3 2 1 6 6 H 1.07996 * 120.00229 * 240.00376 * 5 3 2 7 7 C 1.37876 * 119.99534 * 60.00017 * 5 3 2 8 8 N 1.31514 * 119.99749 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 120.00449 * 0.02562 * 7 5 3 10 10 H 1.48499 * 109.47135 * 269.99770 * 9 7 5 11 11 H 1.48507 * 109.46715 * 29.99727 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99535 * 9 7 5 13 13 N 1.46905 * 109.46934 * 299.47828 * 3 2 1 14 14 C 1.46895 * 111.00151 * 274.50475 * 13 3 2 15 15 C 1.50701 * 109.47186 * 174.90486 * 14 13 3 16 16 C 1.38384 * 119.84699 * 89.99909 * 15 14 13 17 17 C 1.37923 * 120.15139 * 179.97438 * 16 15 14 18 18 C 1.39645 * 119.84539 * 0.02562 * 17 16 15 19 19 C 1.47736 * 120.15015 * 179.97438 * 18 17 16 20 20 O 1.21465 * 119.99718 * 174.09125 * 19 18 17 21 21 O 1.34709 * 119.99754 * 354.09355 * 19 18 17 22 22 C 1.39610 * 119.70431 * 359.97438 * 18 17 16 23 23 C 1.50702 * 120.07784 * 180.02562 * 22 18 17 24 24 C 1.37969 * 119.84206 * 359.73492 * 22 18 17 25 25 H 1.08998 * 109.47221 * 183.41715 * 1 2 3 26 26 H 1.08999 * 109.47573 * 303.42152 * 1 2 3 27 27 H 1.09006 * 109.46974 * 63.41773 * 1 2 3 28 28 H 1.09003 * 109.47128 * 239.99872 * 2 1 3 29 29 H 1.09000 * 109.47014 * 119.99807 * 2 1 3 30 30 H 0.97002 * 120.00098 * 180.02562 * 8 7 5 31 31 H 1.00902 * 110.99938 * 150.54516 * 13 3 2 32 32 H 1.09001 * 109.47319 * 294.90548 * 14 13 3 33 33 H 1.09001 * 109.47045 * 54.90202 * 14 13 3 34 34 H 1.08007 * 119.92711 * 0.02562 * 16 15 14 35 35 H 1.07997 * 120.07987 * 179.97438 * 17 16 15 36 36 H 0.96703 * 116.99669 * 179.97438 * 21 19 18 37 37 H 1.09006 * 109.46680 * 83.40040 * 23 22 18 38 38 H 1.08999 * 109.47097 * 203.39278 * 23 22 18 39 39 H 1.08991 * 109.47268 * 323.39961 * 23 22 18 40 40 H 1.07996 * 119.92110 * 180.29472 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0093 5 6 1.5272 2.1567 1.2239 6 1 0.9072 3.0345 1.1168 7 6 1.8495 1.6894 2.4804 8 7 1.4023 2.3130 3.5485 9 14 2.9224 0.1716 2.6657 10 1 2.0639 -1.0394 2.7072 11 1 3.8529 0.0794 1.5120 12 1 3.7034 0.2682 3.9250 13 7 1.5607 2.1314 -1.2057 14 6 2.4605 1.8916 -2.3419 15 6 1.8736 2.5070 -3.5860 16 6 2.1790 3.8155 -3.9170 17 6 1.6459 4.3849 -5.0545 18 6 0.7957 3.6379 -5.8726 19 6 0.2204 4.2412 -7.0923 20 8 -0.4309 3.5593 -7.8579 21 8 0.4182 5.5475 -7.3552 22 6 0.4917 2.3183 -5.5327 23 6 -0.4244 1.5043 -6.4097 24 6 1.0368 1.7594 -4.3951 25 1 -0.3633 -1.0258 0.0613 26 1 -0.3634 0.5660 0.8577 27 1 -0.3633 0.4599 -0.9191 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6294 1.9845 4.4325 31 1 1.4471 3.1196 -1.0366 32 1 3.4319 2.3418 -2.1373 33 1 2.5812 0.8184 -2.4895 34 1 2.8371 4.3920 -3.2837 35 1 1.8847 5.4063 -5.3116 36 1 0.0225 5.8970 -8.1654 37 1 0.1470 1.0761 -7.2333 38 1 -0.8718 0.7025 -5.8224 39 1 -1.2107 2.1455 -6.8078 40 1 0.8064 0.7373 -4.1335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030603.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:28 Heat of formation + Delta-G solvation = -88.806730 kcal Electronic energy + Delta-G solvation = -21148.598327 eV Core-core repulsion = 17927.129037 eV Total energy + Delta-G solvation = -3221.469290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57092 -39.98276 -38.21395 -37.14674 -35.02829 -33.80496 -33.19368 -31.79200 -28.90270 -28.17104 -26.53684 -24.94327 -23.75249 -23.16598 -21.39540 -20.99887 -19.10430 -18.62407 -18.20469 -17.45944 -16.77433 -16.43212 -16.08178 -15.60971 -15.56078 -15.32558 -14.97690 -14.70450 -14.43626 -14.27210 -14.07468 -13.85757 -13.41506 -13.21727 -13.06097 -12.86033 -12.67309 -12.48567 -12.47184 -12.20773 -12.07038 -11.94166 -11.76139 -11.22417 -11.14849 -10.92993 -10.67410 -9.89408 -9.70907 -9.08980 -8.27314 -6.29542 -0.31827 0.40302 1.32980 1.36089 1.45714 1.52479 2.10861 2.33129 2.71945 3.09139 3.58703 3.73455 3.86597 3.96516 4.10581 4.35120 4.35647 4.43638 4.50023 4.57875 4.68756 4.76691 4.77883 4.81249 4.84753 4.99461 5.05432 5.18577 5.19704 5.26691 5.37469 5.42502 5.52127 5.60519 5.65676 5.67477 5.79540 5.89534 6.01517 6.51772 6.66717 6.85162 7.00479 7.35772 8.88984 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032930 B = 0.003672 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.080367 B = 7624.331791 C = 7974.173353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 C 0.190 3.810 4 H -0.002 1.002 5 C -0.508 4.508 6 H 0.041 0.959 7 C 0.019 3.981 8 N -0.946 5.946 9 Si 0.943 3.057 10 H -0.268 1.268 11 H -0.249 1.249 12 H -0.302 1.302 13 N -0.669 5.669 14 C 0.090 3.910 15 C -0.032 4.032 16 C -0.140 4.140 17 C -0.052 4.052 18 C -0.158 4.158 19 C 0.532 3.468 20 O -0.536 6.536 21 O -0.506 6.506 22 C -0.027 4.027 23 C -0.118 4.118 24 C -0.120 4.120 25 H 0.043 0.957 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.337 0.663 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.432 0.568 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.459 1.168 -21.285 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C 0.081 3.919 4 H 0.015 0.985 5 C -0.546 4.546 6 H 0.059 0.941 7 C -0.179 4.179 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.173 1.173 12 H -0.230 1.230 13 N -0.300 5.300 14 C -0.039 4.039 15 C -0.033 4.033 16 C -0.158 4.158 17 C -0.070 4.070 18 C -0.159 4.159 19 C 0.378 3.622 20 O -0.428 6.428 21 O -0.320 6.320 22 C -0.028 4.028 23 C -0.174 4.174 24 C -0.138 4.138 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.155 0.845 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.159 0.841 35 H 0.172 0.828 36 H 0.294 0.706 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.029 0.342 -21.130 21.158 hybrid contribution 0.784 0.370 0.550 1.027 sum 1.813 0.711 -20.580 20.672 Atomic orbital electron populations 1.21373 0.95173 0.99226 1.01732 1.21738 0.97754 0.97091 0.98695 1.19423 0.92546 0.92130 0.87800 0.98490 1.21243 1.30938 1.12090 0.90337 0.94105 1.25668 0.96974 0.99744 0.95522 1.70031 1.47505 1.42546 0.98605 0.85937 0.79534 0.80367 0.77078 1.19466 1.17295 1.23011 1.60458 1.48889 1.16099 1.04519 1.21040 0.93628 1.00920 0.88312 1.20194 0.94508 0.94130 0.94444 1.21259 1.01942 0.94838 0.97798 1.21541 0.92979 1.00125 0.92357 1.19048 1.05266 0.95262 0.96355 1.20858 0.76267 0.80123 0.84930 1.90828 1.39599 1.62901 1.49470 1.84527 1.73063 1.25060 1.49373 1.20173 0.95209 0.92474 0.94928 1.21062 0.98565 0.99378 0.98372 1.21011 0.97734 1.01179 0.93918 0.93748 0.94967 0.91872 0.91955 0.95180 0.92662 0.84514 0.94112 0.89840 0.84143 0.82763 0.70575 0.90354 0.90734 0.90210 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.65 9.52 71.98 0.69 -3.96 16 2 C -0.11 -4.62 5.28 30.60 0.16 -4.46 16 3 C 0.19 8.27 1.89 44.17 0.08 8.36 16 4 H 0.00 -0.11 6.91 -2.39 -0.02 -0.12 16 5 C -0.51 -27.36 7.83 25.60 0.20 -27.16 16 6 H 0.04 2.45 7.85 -2.91 -0.02 2.43 16 7 C 0.02 1.05 5.45 84.65 0.46 1.51 16 8 N -0.95 -57.76 13.96 21.45 0.30 -57.46 16 9 Si 0.94 43.90 24.37 68.60 1.67 45.57 16 10 H -0.27 -12.06 6.87 99.48 0.68 -11.37 16 11 H -0.25 -10.68 6.53 99.48 0.65 -10.03 16 12 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 13 N -0.67 -24.45 5.58 -499.46 -2.79 -27.24 16 14 C 0.09 2.58 5.58 85.56 0.48 3.06 16 15 C -0.03 -0.82 5.44 -19.80 -0.11 -0.93 16 16 C -0.14 -3.20 9.68 22.23 0.22 -2.98 16 17 C -0.05 -1.10 9.62 22.53 0.22 -0.88 16 18 C -0.16 -3.67 5.87 -20.10 -0.12 -3.79 16 19 C 0.53 11.46 8.21 70.33 0.58 12.04 16 20 O -0.54 -13.62 14.12 19.95 0.28 -13.34 16 21 O -0.51 -7.46 12.70 -56.19 -0.71 -8.17 16 22 C -0.03 -0.66 5.92 -19.60 -0.12 -0.78 16 23 C -0.12 -2.55 8.74 71.24 0.62 -1.92 16 24 C -0.12 -2.95 9.31 22.23 0.21 -2.74 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.03 1.48 7.08 -2.39 -0.02 1.46 16 27 H 0.06 2.36 7.73 -2.38 -0.02 2.34 16 28 H 0.06 2.13 7.41 -2.39 -0.02 2.11 16 29 H 0.03 1.28 3.28 -2.39 -0.01 1.27 16 30 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.34 12.85 8.26 -89.69 -0.74 12.11 16 32 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 33 H 0.08 2.29 7.30 -2.39 -0.02 2.28 16 34 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 35 H 0.15 2.56 7.63 -2.91 -0.02 2.54 16 36 H 0.43 2.25 9.11 -74.06 -0.67 1.58 16 37 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 39 H 0.08 1.91 5.85 -2.39 -0.01 1.90 16 40 H 0.14 3.16 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -66.12 324.80 1.89 -64.23 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.42 Total: 21.05 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: 3.57 Total: -24.64 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -2.49 Total: -84.70 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.43 Total: -21.51 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.67 Total: 45.57 kcal Total: -66.12 1.89 -64.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030603.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.581 kcal (2) G-P(sol) polarization free energy of solvation -66.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds