Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.46887 * 2 1 4 4 H 1.08998 * 109.47355 * 54.95323 * 3 2 1 5 5 C 1.50702 * 109.47020 * 174.95082 * 3 2 1 6 6 H 1.08009 * 120.00154 * 119.99745 * 5 3 2 7 7 C 1.37870 * 120.00159 * 299.99991 * 5 3 2 8 8 N 1.31517 * 120.00225 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00228 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47401 * 59.99674 * 9 7 5 11 11 H 1.48502 * 109.47298 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46843 * 299.99535 * 9 7 5 13 13 N 1.46897 * 109.47306 * 294.94881 * 3 2 1 14 14 C 1.46893 * 111.00396 * 153.72506 * 13 3 2 15 15 C 1.50699 * 109.47323 * 185.15894 * 14 13 3 16 16 C 1.38386 * 119.85302 * 89.99788 * 15 14 13 17 17 C 1.37923 * 120.15006 * 180.02562 * 16 15 14 18 18 C 1.39647 * 119.85138 * 359.97438 * 17 16 15 19 19 C 1.47721 * 120.14798 * 179.97438 * 18 17 16 20 20 O 1.21476 * 119.99709 * 173.72286 * 19 18 17 21 21 O 1.34709 * 120.00493 * 353.70971 * 19 18 17 22 22 C 1.39610 * 119.69934 * 0.02562 * 18 17 16 23 23 C 1.50700 * 120.07528 * 180.02562 * 22 18 17 24 24 C 1.37969 * 119.84429 * 359.71640 * 22 18 17 25 25 H 1.09002 * 109.47337 * 185.08362 * 1 2 3 26 26 H 1.09004 * 109.47574 * 305.08154 * 1 2 3 27 27 H 1.08998 * 109.47776 * 65.08549 * 1 2 3 28 28 H 1.08992 * 109.47582 * 239.99712 * 2 1 3 29 29 H 1.09007 * 109.47163 * 119.99284 * 2 1 3 30 30 H 0.97002 * 120.00214 * 179.97438 * 8 7 5 31 31 H 1.00909 * 110.99974 * 277.68406 * 13 3 2 32 32 H 1.08997 * 109.47152 * 305.15604 * 14 13 3 33 33 H 1.09001 * 109.47379 * 65.15693 * 14 13 3 34 34 H 1.07997 * 119.92312 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.07206 * 179.97438 * 17 16 15 36 36 H 0.96698 * 117.00435 * 180.02562 * 21 19 18 37 37 H 1.08995 * 109.47358 * 83.43839 * 23 22 18 38 38 H 1.09000 * 109.46940 * 203.44523 * 23 22 18 39 39 H 1.08996 * 109.46807 * 323.44038 * 23 22 18 40 40 H 1.08001 * 119.92132 * 180.29595 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6046 1.9818 0.8413 5 6 3.5417 1.4444 0.1250 6 1 4.1477 1.8887 -0.6508 7 6 4.1422 0.8788 1.2298 8 7 3.4044 0.3381 2.1747 9 14 6.0037 0.8818 1.3851 10 1 6.4983 2.2820 1.3854 11 1 6.3956 0.2176 2.6542 12 1 6.5972 0.1474 0.2389 13 7 1.6523 2.0989 -1.2557 14 6 1.5438 3.5530 -1.0781 15 6 1.0238 4.1768 -2.3475 16 6 -0.3392 4.3296 -2.5317 17 6 -0.8219 4.8993 -3.6914 18 6 0.0681 5.3227 -4.6806 19 6 -0.4417 5.9332 -5.9254 20 8 0.3341 6.4039 -6.7330 21 8 -1.7669 5.9677 -6.1651 22 6 1.4420 5.1656 -4.4882 23 6 2.4101 5.6201 -5.5498 24 6 1.9114 4.5990 -3.3210 25 1 -0.3634 -1.0236 0.0911 26 1 -0.3634 0.5906 0.8410 27 1 -0.3634 0.4329 -0.9320 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8269 -0.0601 2.9518 31 1 2.2987 1.8723 -1.9967 32 1 0.8573 3.7688 -0.2595 33 1 2.5261 3.9651 -0.8467 34 1 -1.0265 4.0021 -1.7657 35 1 -1.8859 5.0175 -3.8340 36 1 -2.0527 6.3770 -6.9932 37 1 2.5982 6.6877 -5.4370 38 1 3.3470 5.0729 -5.4454 39 1 1.9853 5.4282 -6.5351 40 1 2.9741 4.4812 -3.1689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -80.335061 kcal Electronic energy + Delta-G solvation = -21026.024019 eV Core-core repulsion = 17804.922088 eV Total energy + Delta-G solvation = -3221.101931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61565 -38.91283 -36.41636 -36.10854 -33.44626 -32.34211 -31.61610 -30.30014 -27.20808 -26.91322 -25.05717 -22.97416 -22.30655 -21.95755 -20.20024 -19.49221 -18.21163 -17.26501 -16.74581 -15.84601 -15.36150 -15.08368 -14.86879 -14.49046 -14.09181 -13.63521 -13.47380 -13.20764 -13.04787 -12.75828 -12.48394 -12.38530 -11.97826 -11.71284 -11.62707 -11.48404 -11.21768 -11.05382 -11.03486 -10.85556 -10.68003 -10.23538 -10.16454 -9.64285 -9.59023 -9.13291 -8.80802 -8.63747 -8.42657 -7.35082 -6.04754 -4.18185 0.72947 1.43421 2.51463 2.93164 3.25005 3.30692 3.32808 3.79163 4.35342 4.75943 4.83119 4.96966 5.06651 5.21056 5.40136 5.48470 5.53664 5.71366 5.73992 5.81928 5.88613 6.07364 6.18536 6.30729 6.34840 6.38009 6.40633 6.47971 6.56017 6.67995 6.78380 6.95161 7.08143 7.13968 7.37582 7.52975 7.72373 7.78534 8.01989 8.06475 8.25062 8.56565 8.93247 9.49824 10.95513 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.003833 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.352868 B = 7303.304311 C = 8159.948119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.549 4.549 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.681 5.681 14 C 0.094 3.906 15 C -0.017 4.017 16 C -0.124 4.124 17 C -0.059 4.059 18 C -0.151 4.151 19 C 0.528 3.472 20 O -0.516 6.516 21 O -0.514 6.514 22 C -0.017 4.017 23 C -0.122 4.122 24 C -0.132 4.132 25 H 0.024 0.976 26 H 0.036 0.964 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.262 0.738 31 H 0.330 0.670 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.410 0.590 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.955 9.292 -11.802 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.588 4.588 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.036 4.036 15 C -0.017 4.017 16 C -0.142 4.142 17 C -0.077 4.077 18 C -0.152 4.152 19 C 0.374 3.626 20 O -0.406 6.406 21 O -0.326 6.326 22 C -0.017 4.017 23 C -0.178 4.178 24 C -0.151 4.151 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.146 0.854 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.268 0.732 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.284 9.017 -11.340 16.689 hybrid contribution 1.811 0.448 -0.271 1.885 sum -6.473 9.465 -11.611 16.319 Atomic orbital electron populations 1.21691 0.98960 0.98365 1.00342 1.21494 0.92129 0.99084 1.01731 1.19187 0.92923 0.91287 0.85813 0.94889 1.21815 0.92668 1.38652 1.05664 0.92879 1.24921 0.97961 0.94876 0.95646 1.69863 1.34971 1.37988 1.09383 0.86712 0.85965 0.78213 0.77422 1.20376 1.21202 1.20256 1.60961 1.54941 1.04641 1.10514 1.20891 0.99564 0.90764 0.92349 1.20493 0.93354 0.92089 0.95790 1.21059 0.95305 1.00030 0.97821 1.21377 0.99499 0.94421 0.92395 1.18764 0.93631 1.09008 0.93797 1.21019 0.79658 0.75767 0.86141 1.90829 1.57010 1.44676 1.48130 1.84584 1.25790 1.76046 1.46183 1.19949 0.92226 0.94320 0.95242 1.21096 0.97218 1.01384 0.98138 1.21000 1.00332 1.00784 0.92953 0.95643 0.94438 0.93476 0.95056 0.89099 0.92750 0.85400 0.90744 0.93975 0.85038 0.84876 0.73156 0.90767 0.91909 0.89265 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.74 37.15 0.36 -2.36 16 2 C -0.11 -2.46 5.45 -26.74 -0.15 -2.60 16 3 C 0.22 5.08 1.98 -68.87 -0.14 4.95 16 4 H 0.03 0.86 7.70 -51.93 -0.40 0.46 16 5 C -0.55 -14.23 8.49 -34.44 -0.29 -14.53 16 6 H 0.05 1.36 7.72 -52.48 -0.41 0.96 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.34 11.29 55.43 0.63 -23.71 16 9 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.68 -13.45 5.76 -109.23 -0.63 -14.08 16 14 C 0.09 1.62 5.63 -4.98 -0.03 1.60 16 15 C -0.02 -0.25 5.44 -104.53 -0.57 -0.81 16 16 C -0.12 -1.66 9.68 -39.64 -0.38 -2.04 16 17 C -0.06 -0.72 9.62 -39.17 -0.38 -1.10 16 18 C -0.15 -1.98 5.87 -104.98 -0.62 -2.59 16 19 C 0.53 6.43 8.20 34.61 0.28 6.71 16 20 O -0.52 -7.15 14.13 -19.25 -0.27 -7.42 16 21 O -0.51 -4.63 12.70 -40.52 -0.51 -5.15 16 22 C -0.02 -0.23 5.92 -104.21 -0.62 -0.85 16 23 C -0.12 -1.48 8.73 36.01 0.31 -1.17 16 24 C -0.13 -1.86 9.31 -39.64 -0.37 -2.23 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.90 7.90 -51.93 -0.41 0.49 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 2.37 5.95 -51.92 -0.31 2.06 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.33 6.55 8.44 -39.29 -0.33 6.22 16 32 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 33 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 34 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.13 1.37 7.63 -52.49 -0.40 0.97 16 36 H 0.41 1.75 9.11 45.56 0.42 2.16 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 39 H 0.09 1.15 5.85 -51.93 -0.30 0.85 16 40 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -28.86 335.35 -8.49 -37.34 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.06 Total: 7.65 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -2.67 Total: -15.30 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.00 Total: -37.79 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.79 Total: -12.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.86 -8.49 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.991 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds