Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.46887 * 2 1 4 4 H 1.08998 * 109.47355 * 54.95323 * 3 2 1 5 5 C 1.50702 * 109.47020 * 174.95082 * 3 2 1 6 6 H 1.08009 * 120.00154 * 119.99745 * 5 3 2 7 7 C 1.37870 * 120.00159 * 299.99991 * 5 3 2 8 8 N 1.31517 * 120.00225 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00228 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47401 * 59.99674 * 9 7 5 11 11 H 1.48502 * 109.47298 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46843 * 299.99535 * 9 7 5 13 13 N 1.46897 * 109.47306 * 294.94881 * 3 2 1 14 14 C 1.46893 * 111.00396 * 153.72506 * 13 3 2 15 15 C 1.50699 * 109.47323 * 185.15894 * 14 13 3 16 16 C 1.38386 * 119.85302 * 89.99788 * 15 14 13 17 17 C 1.37923 * 120.15006 * 180.02562 * 16 15 14 18 18 C 1.39647 * 119.85138 * 359.97438 * 17 16 15 19 19 C 1.47721 * 120.14798 * 179.97438 * 18 17 16 20 20 O 1.21476 * 119.99709 * 173.72286 * 19 18 17 21 21 O 1.34709 * 120.00493 * 353.70971 * 19 18 17 22 22 C 1.39610 * 119.69934 * 0.02562 * 18 17 16 23 23 C 1.50700 * 120.07528 * 180.02562 * 22 18 17 24 24 C 1.37969 * 119.84429 * 359.71640 * 22 18 17 25 25 H 1.09002 * 109.47337 * 185.08362 * 1 2 3 26 26 H 1.09004 * 109.47574 * 305.08154 * 1 2 3 27 27 H 1.08998 * 109.47776 * 65.08549 * 1 2 3 28 28 H 1.08992 * 109.47582 * 239.99712 * 2 1 3 29 29 H 1.09007 * 109.47163 * 119.99284 * 2 1 3 30 30 H 0.97002 * 120.00214 * 179.97438 * 8 7 5 31 31 H 1.00909 * 110.99974 * 277.68406 * 13 3 2 32 32 H 1.08997 * 109.47152 * 305.15604 * 14 13 3 33 33 H 1.09001 * 109.47379 * 65.15693 * 14 13 3 34 34 H 1.07997 * 119.92312 * 0.02562 * 16 15 14 35 35 H 1.08000 * 120.07206 * 179.97438 * 17 16 15 36 36 H 0.96698 * 117.00435 * 180.02562 * 21 19 18 37 37 H 1.08995 * 109.47358 * 83.43839 * 23 22 18 38 38 H 1.09000 * 109.46940 * 203.44523 * 23 22 18 39 39 H 1.08996 * 109.46807 * 323.44038 * 23 22 18 40 40 H 1.08001 * 119.92132 * 180.29595 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 1 1.6046 1.9818 0.8413 5 6 3.5417 1.4444 0.1250 6 1 4.1477 1.8887 -0.6508 7 6 4.1422 0.8788 1.2298 8 7 3.4044 0.3381 2.1747 9 14 6.0037 0.8818 1.3851 10 1 6.4983 2.2820 1.3854 11 1 6.3956 0.2176 2.6542 12 1 6.5972 0.1474 0.2389 13 7 1.6523 2.0989 -1.2557 14 6 1.5438 3.5530 -1.0781 15 6 1.0238 4.1768 -2.3475 16 6 -0.3392 4.3296 -2.5317 17 6 -0.8219 4.8993 -3.6914 18 6 0.0681 5.3227 -4.6806 19 6 -0.4417 5.9332 -5.9254 20 8 0.3341 6.4039 -6.7330 21 8 -1.7669 5.9677 -6.1651 22 6 1.4420 5.1656 -4.4882 23 6 2.4101 5.6201 -5.5498 24 6 1.9114 4.5990 -3.3210 25 1 -0.3634 -1.0236 0.0911 26 1 -0.3634 0.5906 0.8410 27 1 -0.3634 0.4329 -0.9320 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8269 -0.0601 2.9518 31 1 2.2987 1.8723 -1.9967 32 1 0.8573 3.7688 -0.2595 33 1 2.5261 3.9651 -0.8467 34 1 -1.0265 4.0021 -1.7657 35 1 -1.8859 5.0175 -3.8340 36 1 -2.0527 6.3770 -6.9932 37 1 2.5982 6.6877 -5.4370 38 1 3.3470 5.0729 -5.4454 39 1 1.9853 5.4282 -6.5351 40 1 2.9741 4.4812 -3.1689 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -97.439799 kcal Electronic energy + Delta-G solvation = -21026.765736 eV Core-core repulsion = 17804.922088 eV Total energy + Delta-G solvation = -3221.843648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56296 -39.95167 -37.93113 -37.12616 -34.95441 -33.65690 -33.17505 -31.72215 -28.64740 -28.16684 -26.56924 -24.56313 -23.46437 -23.10113 -21.51422 -21.11946 -19.10282 -18.69560 -18.19258 -16.84000 -16.75305 -16.46362 -16.29672 -15.77385 -15.46618 -15.12490 -14.61023 -14.50395 -14.19615 -14.08584 -13.83716 -13.68837 -13.24660 -13.13749 -13.07998 -12.84464 -12.73918 -12.53749 -12.47025 -12.41177 -12.09988 -11.94050 -11.49641 -11.41719 -11.13634 -10.99736 -10.44936 -9.91561 -9.68598 -9.05866 -8.04931 -6.26754 -0.30668 0.40279 1.40287 1.41507 1.48267 1.53539 2.11290 2.40960 2.73751 3.15677 3.64564 3.82113 3.86822 4.02210 4.15991 4.34016 4.44187 4.60421 4.66684 4.73513 4.78551 4.79119 4.81061 4.93172 4.96496 5.04024 5.19698 5.20230 5.27758 5.45019 5.50723 5.52723 5.63088 5.65951 5.67927 5.78373 5.90259 6.10842 6.20192 6.36771 6.78322 7.00270 7.01791 7.44774 8.91642 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024765 B = 0.003833 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.352868 B = 7303.304311 C = 8159.948119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.562 4.562 6 H 0.051 0.949 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.671 5.671 14 C 0.101 3.899 15 C -0.030 4.030 16 C -0.126 4.126 17 C -0.050 4.050 18 C -0.158 4.158 19 C 0.533 3.467 20 O -0.536 6.536 21 O -0.505 6.505 22 C -0.025 4.025 23 C -0.118 4.118 24 C -0.137 4.137 25 H 0.042 0.958 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.061 0.939 30 H 0.262 0.738 31 H 0.330 0.670 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.141 0.859 35 H 0.158 0.842 36 H 0.432 0.568 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 9.893 -13.143 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.601 4.601 6 H 0.069 0.931 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.300 5.300 14 C -0.029 4.029 15 C -0.030 4.030 16 C -0.144 4.144 17 C -0.068 4.068 18 C -0.159 4.159 19 C 0.380 3.620 20 O -0.429 6.429 21 O -0.319 6.319 22 C -0.025 4.025 23 C -0.174 4.174 24 C -0.155 4.155 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.294 0.706 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.116 9.633 -12.707 18.368 hybrid contribution 1.979 0.317 0.085 2.006 sum -7.137 9.950 -12.623 17.586 Atomic orbital electron populations 1.21548 0.96312 0.99539 1.00713 1.21360 0.94484 0.98322 0.99972 1.18958 0.91621 0.91574 0.86470 0.97758 1.22156 0.94097 1.38243 1.05579 0.93063 1.25625 1.01886 0.94766 0.95532 1.69991 1.36417 1.38693 1.09756 0.85777 0.81281 0.78209 0.77338 1.19998 1.21042 1.19834 1.60871 1.54289 1.06192 1.08664 1.20794 0.98886 0.89228 0.93962 1.20246 0.94289 0.93539 0.94953 1.21185 0.94706 0.99949 0.98571 1.21583 1.00616 0.93160 0.91396 1.19021 0.93718 1.08620 0.94555 1.20803 0.80436 0.75272 0.85496 1.90830 1.57825 1.45574 1.48640 1.84523 1.23790 1.75829 1.47735 1.20104 0.92955 0.94261 0.95216 1.21061 0.97331 1.01656 0.97305 1.21022 1.00372 1.00996 0.93152 0.93914 0.94854 0.92345 0.95461 0.92086 0.92881 0.85375 0.91042 0.95466 0.84087 0.82422 0.70554 0.90478 0.90962 0.89902 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 9.74 71.98 0.70 -4.13 16 2 C -0.10 -4.81 5.45 30.59 0.17 -4.64 16 3 C 0.22 10.66 1.98 44.17 0.09 10.75 16 4 H 0.00 0.24 7.70 -2.39 -0.02 0.22 16 5 C -0.56 -29.50 8.49 25.60 0.22 -29.28 16 6 H 0.05 2.65 7.72 -2.91 -0.02 2.62 16 7 C 0.02 1.19 5.29 84.65 0.45 1.64 16 8 N -0.91 -50.96 11.29 21.45 0.24 -50.72 16 9 Si 0.95 42.52 29.54 68.60 2.03 44.55 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.67 -26.52 5.76 -499.49 -2.88 -29.40 16 14 C 0.10 3.50 5.63 85.56 0.48 3.98 16 15 C -0.03 -0.86 5.44 -19.80 -0.11 -0.97 16 16 C -0.13 -3.16 9.68 22.23 0.22 -2.94 16 17 C -0.05 -1.10 9.62 22.54 0.22 -0.88 16 18 C -0.16 -3.82 5.87 -20.10 -0.12 -3.94 16 19 C 0.53 11.74 8.20 70.33 0.58 12.31 16 20 O -0.54 -13.92 14.13 19.91 0.28 -13.63 16 21 O -0.50 -7.47 12.70 -56.19 -0.71 -8.19 16 22 C -0.02 -0.64 5.92 -19.60 -0.12 -0.76 16 23 C -0.12 -2.72 8.73 71.24 0.62 -2.09 16 24 C -0.14 -3.76 9.31 22.23 0.21 -3.55 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.06 2.13 7.90 -2.39 -0.02 2.11 16 28 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 3.24 5.95 -2.38 -0.01 3.22 16 30 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 31 H 0.33 13.09 8.44 -89.69 -0.76 12.33 16 32 H 0.07 2.50 7.87 -2.39 -0.02 2.48 16 33 H 0.03 1.02 8.06 -2.39 -0.02 1.00 16 34 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.16 2.68 7.63 -2.91 -0.02 2.66 16 36 H 0.43 2.25 9.11 -74.06 -0.67 1.57 16 37 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 39 H 0.08 2.05 5.85 -2.39 -0.01 2.03 16 40 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -61.26 335.35 2.19 -59.08 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -0.37 Total: 22.80 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.60 Total: -24.50 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -2.63 Total: -80.11 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.43 Total: -21.82 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -61.26 2.19 -59.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.363 kcal (2) G-P(sol) polarization free energy of solvation -61.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds