Wall clock time and date at job start Mon Mar 30 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46824 * 2 1 4 4 C 1.50699 * 109.47408 * 240.00262 * 2 1 3 5 5 O 1.20822 * 119.99747 * 247.50233 * 4 2 1 6 6 O 1.34230 * 119.99852 * 67.50242 * 4 2 1 7 7 C 1.53001 * 109.47310 * 119.99555 * 2 1 3 8 8 H 1.09001 * 109.46365 * 65.05598 * 7 2 1 9 9 N 1.46899 * 109.47081 * 305.05911 * 7 2 1 10 10 C 1.46901 * 111.00230 * 104.71269 * 9 7 2 11 11 C 1.50696 * 109.47199 * 183.94376 * 10 9 7 12 12 H 1.08007 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99853 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00478 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99982 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46824 * 89.99996 * 15 13 11 17 17 H 1.48495 * 109.47428 * 209.99975 * 15 13 11 18 18 H 1.48499 * 109.47248 * 330.00281 * 15 13 11 19 19 C 1.50699 * 109.47031 * 185.05233 * 7 2 1 20 20 C 1.38234 * 120.00079 * 257.84317 * 19 7 2 21 21 C 1.38237 * 119.99840 * 180.02562 * 20 19 7 22 22 C 1.38233 * 120.00146 * 359.95675 * 21 20 19 23 23 C 1.38241 * 119.99655 * 0.02562 * 22 21 20 24 24 C 1.38227 * 120.00334 * 0.06647 * 23 22 21 25 25 H 1.09000 * 109.46971 * 300.28328 * 1 2 3 26 26 H 1.09000 * 109.47302 * 60.28700 * 1 2 3 27 27 H 1.09001 * 109.46943 * 180.28294 * 1 2 3 28 28 H 1.08999 * 109.46957 * 186.46937 * 3 2 1 29 29 H 1.09003 * 109.46785 * 306.47276 * 3 2 1 30 30 H 1.09002 * 109.46922 * 66.47266 * 3 2 1 31 31 H 0.96706 * 116.99669 * 180.02562 * 6 4 2 32 32 H 1.00896 * 111.00226 * 340.75294 * 9 7 2 33 33 H 1.09003 * 109.46915 * 303.94044 * 10 9 7 34 34 H 1.09003 * 109.47148 * 63.93765 * 10 9 7 35 35 H 0.97008 * 120.00515 * 180.02562 * 14 13 11 36 36 H 1.07996 * 119.99858 * 359.97438 * 20 19 7 37 37 H 1.08000 * 119.99903 * 179.97438 * 21 20 19 38 38 H 1.07994 * 120.00045 * 179.72081 * 22 21 20 39 39 H 1.08006 * 119.99404 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00040 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.6113 -1.7656 -1.1247 6 8 1.8368 -0.1707 -2.4438 7 6 2.0401 -0.7211 1.2493 8 1 1.7525 -1.7716 1.2051 9 7 1.4532 -0.1027 2.4456 10 6 0.3916 -0.9478 3.0083 11 6 -0.2506 -0.2390 4.1727 12 1 0.0956 0.7412 4.4658 13 6 -1.2794 -0.8421 4.8646 14 7 -1.7006 -2.0359 4.5081 15 14 -2.0750 0.0362 6.3086 16 1 -3.2141 0.8559 5.8226 17 1 -2.5683 -0.9661 7.2869 18 1 -1.0753 0.9173 6.9639 19 6 3.5418 -0.6137 1.3134 20 6 4.3281 -1.6892 0.9448 21 6 5.7057 -1.5907 1.0041 22 6 6.2970 -0.4165 1.4311 23 6 5.5106 0.6592 1.7994 24 6 4.1331 0.5601 1.7419 25 1 -0.3633 0.5182 0.8874 26 1 -0.3634 0.5094 -0.8925 27 1 -0.3633 -1.0277 0.0051 28 1 3.1238 1.4448 -0.1158 29 1 1.5851 1.9887 -0.8264 30 1 1.7743 1.9219 0.9423 31 1 2.1767 -0.6633 -3.2034 32 1 1.1084 0.8233 2.2417 33 1 -0.3598 -1.1446 2.2435 34 1 0.8197 -1.8909 3.3481 35 1 -2.4247 -2.4601 4.9947 36 1 3.8662 -2.6066 0.6113 37 1 6.3200 -2.4311 0.7165 38 1 7.3731 -0.3411 1.4817 39 1 5.9726 1.5765 2.1334 40 1 3.5188 1.4003 2.0300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609648646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:59 Heat of formation + Delta-G solvation = -68.309314 kcal Electronic energy + Delta-G solvation = -22359.099040 eV Core-core repulsion = 19138.518584 eV Total energy + Delta-G solvation = -3220.580456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.81502 -38.92508 -37.00250 -35.94169 -33.52748 -31.93149 -30.80273 -30.54252 -27.16598 -26.90028 -25.15799 -23.56375 -22.25245 -21.49895 -21.04059 -19.12906 -17.76338 -16.81451 -16.62215 -15.88700 -15.53743 -15.13925 -14.86700 -14.56033 -14.45424 -13.68119 -13.41689 -13.10109 -12.87178 -12.69679 -12.36921 -12.22133 -12.11734 -11.83845 -11.73154 -11.44360 -11.39970 -11.21843 -10.90916 -10.82605 -10.72493 -10.41781 -10.39127 -10.11786 -9.96314 -9.19902 -8.54275 -8.46989 -8.26124 -7.41314 -6.06242 -4.08628 1.74471 1.82159 2.37050 3.12095 3.29599 3.36590 3.40674 4.14600 4.40426 4.74658 4.87161 5.01515 5.19329 5.27455 5.30149 5.32334 5.38994 5.48310 5.65005 5.73590 5.86979 5.88617 5.95664 5.96305 6.07397 6.11347 6.28353 6.36612 6.43288 6.49326 6.57736 6.85065 6.87872 7.11034 7.22786 7.38581 7.40891 7.73133 8.00978 8.08200 8.29567 8.52978 9.00109 9.56487 11.04610 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.005666 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.260123 B = 4940.835920 C = 5761.190289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C -0.145 4.145 4 C 0.489 3.511 5 O -0.506 6.506 6 O -0.517 6.517 7 C 0.140 3.860 8 H 0.085 0.915 9 N -0.672 5.672 10 C 0.190 3.810 11 C -0.517 4.517 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.897 3.103 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.061 4.061 20 C -0.092 4.092 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.090 4.090 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.403 0.597 32 H 0.331 0.669 33 H -0.004 1.004 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.755 5.360 -12.227 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.202 4.202 4 C 0.330 3.670 5 O -0.392 6.392 6 O -0.329 6.329 7 C 0.029 3.971 8 H 0.103 0.897 9 N -0.304 5.304 10 C 0.064 3.936 11 C -0.555 4.555 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.725 3.275 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.062 4.062 20 C -0.111 4.111 21 C -0.152 4.152 22 C -0.148 4.148 23 C -0.154 4.154 24 C -0.108 4.108 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.261 0.739 32 H 0.151 0.849 33 H 0.014 0.986 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.089 4.899 -11.343 15.951 hybrid contribution -0.936 0.007 -0.320 0.989 sum 9.154 4.905 -11.662 15.616 Atomic orbital electron populations 1.21978 0.90928 1.03573 1.03771 1.21226 0.98151 0.97401 0.90355 1.22048 1.01846 0.93015 1.03291 1.23534 0.75475 0.83588 0.84372 1.90680 1.38813 1.22921 1.86830 1.84563 1.75969 1.55109 1.17219 1.20399 0.90732 0.98996 0.87017 0.89721 1.60884 1.38415 1.06056 1.25014 1.19746 0.86885 0.93062 0.93900 1.21152 1.16464 1.03654 1.14245 0.91991 1.24961 0.96867 0.94937 0.97612 1.69957 1.28131 1.14403 1.40974 0.86509 0.79452 0.79278 0.82230 1.20735 1.21271 1.19782 1.19864 0.95027 0.93626 0.97722 1.21141 0.93253 0.98809 0.97888 1.21031 0.94907 0.97683 1.01582 1.21015 0.99128 0.93859 1.00750 1.21065 0.94061 0.98611 1.01712 1.21048 0.94121 0.97983 0.97617 0.89576 0.91645 0.91740 0.91489 0.91557 0.90443 0.73937 0.84907 0.98636 0.95323 0.92875 0.85858 0.86889 0.87019 0.86749 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 7.17 37.16 0.27 -1.91 16 2 C -0.07 -1.02 0.50 -155.66 -0.08 -1.09 16 3 C -0.14 -1.83 6.78 37.16 0.25 -1.58 16 4 C 0.49 7.12 6.62 36.00 0.24 7.35 16 5 O -0.51 -8.46 13.76 -18.75 -0.26 -8.72 16 6 O -0.52 -5.85 13.21 -39.26 -0.52 -6.36 16 7 C 0.14 2.49 1.49 -68.86 -0.10 2.39 16 8 H 0.08 1.71 7.15 -51.93 -0.37 1.34 16 9 N -0.67 -13.50 5.38 -109.22 -0.59 -14.09 16 10 C 0.19 4.74 4.67 -4.98 -0.02 4.72 16 11 C -0.52 -14.04 9.28 -34.44 -0.32 -14.36 16 12 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 15 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.06 -1.04 4.12 -104.62 -0.43 -1.47 16 20 C -0.09 -1.54 8.09 -39.58 -0.32 -1.86 16 21 C -0.13 -1.96 10.05 -39.58 -0.40 -2.36 16 22 C -0.13 -1.76 10.05 -39.58 -0.40 -2.16 16 23 C -0.14 -1.91 10.05 -39.58 -0.40 -2.30 16 24 C -0.09 -1.39 7.04 -39.59 -0.28 -1.67 16 25 H 0.09 1.40 6.18 -51.93 -0.32 1.08 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.05 7.89 -51.93 -0.41 0.64 16 28 H 0.07 0.85 6.08 -51.93 -0.32 0.54 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.96 5.86 -51.93 -0.30 0.66 16 31 H 0.40 2.81 9.10 45.56 0.41 3.23 16 32 H 0.33 6.13 5.42 -39.29 -0.21 5.92 16 33 H 0.00 -0.11 6.42 -51.93 -0.33 -0.44 16 34 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.12 2.12 7.05 -52.49 -0.37 1.75 16 37 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.12 1.84 6.53 -52.49 -0.34 1.49 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -31.15 320.24 -7.56 -38.71 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.65 Total: 9.66 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -2.09 Total: -14.80 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.15 Total: -39.55 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.78 Total: -15.09 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.15 -7.56 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609648646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.602 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds