Wall clock time and date at job start Mon Mar 30 2020 01:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46824 * 2 1 4 4 C 1.50699 * 109.47408 * 240.00262 * 2 1 3 5 5 O 1.20822 * 119.99747 * 247.50233 * 4 2 1 6 6 O 1.34230 * 119.99852 * 67.50242 * 4 2 1 7 7 C 1.53001 * 109.47310 * 119.99555 * 2 1 3 8 8 H 1.09001 * 109.46365 * 65.05598 * 7 2 1 9 9 N 1.46899 * 109.47081 * 305.05911 * 7 2 1 10 10 C 1.46901 * 111.00230 * 104.71269 * 9 7 2 11 11 C 1.50696 * 109.47199 * 183.94376 * 10 9 7 12 12 H 1.08007 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99853 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00478 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 119.99982 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46824 * 89.99996 * 15 13 11 17 17 H 1.48495 * 109.47428 * 209.99975 * 15 13 11 18 18 H 1.48499 * 109.47248 * 330.00281 * 15 13 11 19 19 C 1.50699 * 109.47031 * 185.05233 * 7 2 1 20 20 C 1.38234 * 120.00079 * 257.84317 * 19 7 2 21 21 C 1.38237 * 119.99840 * 180.02562 * 20 19 7 22 22 C 1.38233 * 120.00146 * 359.95675 * 21 20 19 23 23 C 1.38241 * 119.99655 * 0.02562 * 22 21 20 24 24 C 1.38227 * 120.00334 * 0.06647 * 23 22 21 25 25 H 1.09000 * 109.46971 * 300.28328 * 1 2 3 26 26 H 1.09000 * 109.47302 * 60.28700 * 1 2 3 27 27 H 1.09001 * 109.46943 * 180.28294 * 1 2 3 28 28 H 1.08999 * 109.46957 * 186.46937 * 3 2 1 29 29 H 1.09003 * 109.46785 * 306.47276 * 3 2 1 30 30 H 1.09002 * 109.46922 * 66.47266 * 3 2 1 31 31 H 0.96706 * 116.99669 * 180.02562 * 6 4 2 32 32 H 1.00896 * 111.00226 * 340.75294 * 9 7 2 33 33 H 1.09003 * 109.46915 * 303.94044 * 10 9 7 34 34 H 1.09003 * 109.47148 * 63.93765 * 10 9 7 35 35 H 0.97008 * 120.00515 * 180.02562 * 14 13 11 36 36 H 1.07996 * 119.99858 * 359.97438 * 20 19 7 37 37 H 1.08000 * 119.99903 * 179.97438 * 21 20 19 38 38 H 1.07994 * 120.00045 * 179.72081 * 22 21 20 39 39 H 1.08006 * 119.99404 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00040 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.6113 -1.7656 -1.1247 6 8 1.8368 -0.1707 -2.4438 7 6 2.0401 -0.7211 1.2493 8 1 1.7525 -1.7716 1.2051 9 7 1.4532 -0.1027 2.4456 10 6 0.3916 -0.9478 3.0083 11 6 -0.2506 -0.2390 4.1727 12 1 0.0956 0.7412 4.4658 13 6 -1.2794 -0.8421 4.8646 14 7 -1.7006 -2.0359 4.5081 15 14 -2.0750 0.0362 6.3086 16 1 -3.2141 0.8559 5.8226 17 1 -2.5683 -0.9661 7.2869 18 1 -1.0753 0.9173 6.9639 19 6 3.5418 -0.6137 1.3134 20 6 4.3281 -1.6892 0.9448 21 6 5.7057 -1.5907 1.0041 22 6 6.2970 -0.4165 1.4311 23 6 5.5106 0.6592 1.7994 24 6 4.1331 0.5601 1.7419 25 1 -0.3633 0.5182 0.8874 26 1 -0.3634 0.5094 -0.8925 27 1 -0.3633 -1.0277 0.0051 28 1 3.1238 1.4448 -0.1158 29 1 1.5851 1.9887 -0.8264 30 1 1.7743 1.9219 0.9423 31 1 2.1767 -0.6633 -3.2034 32 1 1.1084 0.8233 2.2417 33 1 -0.3598 -1.1446 2.2435 34 1 0.8197 -1.8909 3.3481 35 1 -2.4247 -2.4601 4.9947 36 1 3.8662 -2.6066 0.6113 37 1 6.3200 -2.4311 0.7165 38 1 7.3731 -0.3411 1.4817 39 1 5.9726 1.5765 2.1334 40 1 3.5188 1.4003 2.0300 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609648646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:59 Heat of formation + Delta-G solvation = -88.622254 kcal Electronic energy + Delta-G solvation = -22359.979875 eV Core-core repulsion = 19138.518584 eV Total energy + Delta-G solvation = -3221.461291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.02465 -40.10336 -38.30996 -37.05496 -35.39530 -33.62998 -32.15714 -31.70587 -28.72580 -28.29073 -26.60068 -24.93933 -23.73945 -22.99958 -22.27199 -20.41958 -18.87540 -18.62286 -17.86141 -17.40088 -16.68016 -16.55526 -16.45081 -15.97246 -15.80056 -14.89499 -14.75698 -14.36022 -14.33342 -14.18594 -13.90787 -13.74764 -13.36439 -13.15594 -13.00494 -12.93002 -12.67997 -12.63448 -12.51974 -12.39337 -12.12885 -11.97762 -11.71796 -11.61614 -11.36157 -11.14036 -10.65559 -9.64347 -9.46577 -9.14549 -8.20010 -6.30764 0.57036 0.64893 1.21288 1.42822 1.44684 1.55907 2.04856 2.41893 2.96342 3.14227 3.42688 3.61544 3.77605 3.85054 4.14014 4.22747 4.27237 4.38080 4.43658 4.49517 4.64146 4.72221 4.79051 4.83408 4.87754 4.91797 5.09696 5.21737 5.22948 5.24053 5.30411 5.33635 5.57247 5.62176 5.72057 5.73135 5.90091 6.04257 6.25530 6.42971 6.72130 6.92437 7.00715 7.40107 8.91504 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.005666 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.260123 B = 4940.835920 C = 5761.190289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.137 4.137 4 C 0.494 3.506 5 O -0.533 6.533 6 O -0.504 6.504 7 C 0.144 3.856 8 H 0.045 0.955 9 N -0.667 5.667 10 C 0.209 3.791 11 C -0.531 4.531 12 H 0.068 0.932 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.970 3.030 16 H -0.269 1.269 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.079 4.079 20 C -0.114 4.114 21 C -0.138 4.138 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.099 4.099 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.425 0.575 32 H 0.342 0.658 33 H -0.020 1.020 34 H -0.014 1.014 35 H 0.264 0.736 36 H 0.104 0.896 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.054 7.880 -12.521 18.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.194 4.194 4 C 0.336 3.664 5 O -0.423 6.423 6 O -0.317 6.317 7 C 0.034 3.966 8 H 0.064 0.936 9 N -0.299 5.299 10 C 0.082 3.918 11 C -0.569 4.569 12 H 0.086 0.914 13 C -0.195 4.195 14 N -0.575 5.575 15 Si 0.795 3.205 16 H -0.195 1.195 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.080 4.080 20 C -0.133 4.133 21 C -0.156 4.156 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.117 4.117 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.286 0.714 32 H 0.163 0.837 33 H -0.002 1.002 34 H 0.004 0.996 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.150 0.850 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.402 7.443 -11.681 17.940 hybrid contribution -1.266 -0.818 -0.326 1.542 sum 10.137 6.625 -12.006 17.053 Atomic orbital electron populations 1.21911 0.91245 1.02160 1.04376 1.21074 0.97733 0.98654 0.89491 1.22020 1.02026 0.91106 1.04289 1.23312 0.74919 0.82988 0.85183 1.90687 1.40158 1.24054 1.87366 1.84485 1.75526 1.54866 1.16858 1.20228 0.91791 0.96930 0.87692 0.93627 1.60710 1.36409 1.05909 1.26832 1.19316 0.87223 0.91933 0.93375 1.21519 1.16650 1.03953 1.14787 0.91376 1.25906 0.97498 0.95600 1.00542 1.70101 1.28798 1.16101 1.42456 0.85369 0.78672 0.78072 0.78399 1.19467 1.21278 1.18859 1.19788 0.94028 0.94748 0.99438 1.21131 0.94555 0.98250 0.99365 1.21303 0.94044 0.99098 1.01172 1.21414 1.00887 0.92912 0.99076 1.21441 0.93316 0.99913 1.00508 1.21168 0.95278 0.97436 0.97812 0.91061 0.88803 0.94176 0.91267 0.89373 0.90283 0.71416 0.83706 1.00222 0.99607 0.92771 0.87805 0.84950 0.83676 0.83720 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 7.17 71.98 0.52 -3.75 16 2 C -0.07 -1.99 0.50 -52.92 -0.03 -2.02 16 3 C -0.14 -3.24 6.78 71.99 0.49 -2.75 16 4 C 0.49 14.26 6.62 71.24 0.47 14.73 16 5 O -0.53 -18.41 13.76 21.98 0.30 -18.11 16 6 O -0.50 -10.39 13.21 -51.42 -0.68 -11.07 16 7 C 0.14 5.40 1.49 44.17 0.07 5.46 16 8 H 0.05 2.03 7.15 -2.39 -0.02 2.01 16 9 N -0.67 -27.74 5.38 -499.46 -2.69 -30.43 16 10 C 0.21 11.01 4.67 85.56 0.40 11.41 16 11 C -0.53 -29.46 9.28 25.60 0.24 -29.22 16 12 H 0.07 3.62 7.81 -2.91 -0.02 3.60 16 13 C 0.00 0.16 5.46 84.65 0.46 0.62 16 14 N -0.93 -56.31 13.29 21.44 0.28 -56.02 16 15 Si 0.97 43.73 29.54 68.60 2.03 45.75 16 16 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 19 C -0.08 -2.73 4.12 -19.87 -0.08 -2.81 16 20 C -0.11 -3.92 8.09 22.27 0.18 -3.74 16 21 C -0.14 -3.88 10.05 22.27 0.22 -3.66 16 22 C -0.13 -3.03 10.05 22.27 0.22 -2.81 16 23 C -0.13 -3.35 10.05 22.27 0.22 -3.13 16 24 C -0.10 -2.94 7.04 22.27 0.16 -2.78 16 25 H 0.07 2.38 6.18 -2.39 -0.01 2.36 16 26 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.04 1.39 7.89 -2.39 -0.02 1.37 16 28 H 0.07 1.62 6.08 -2.39 -0.01 1.61 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.83 5.86 -2.39 -0.01 1.82 16 31 H 0.42 4.98 9.10 -74.05 -0.67 4.31 16 32 H 0.34 12.80 5.42 -89.70 -0.49 12.32 16 33 H -0.02 -1.09 6.42 -2.39 -0.02 -1.11 16 34 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 35 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 36 H 0.10 3.86 7.05 -2.91 -0.02 3.84 16 37 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.13 3.63 6.53 -2.91 -0.02 3.61 16 Total: -1.00 -69.48 320.24 2.69 -66.79 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -0.10 Total: 27.53 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 3.54 Total: -24.44 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -2.40 Total: -86.45 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.38 Total: -29.18 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -69.48 2.69 -66.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609648646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.833 kcal (2) G-P(sol) polarization free energy of solvation -69.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds