Wall clock time and date at job start Mon Mar 30 2020 01:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52990 * 109.47205 * 2 1 4 4 C 1.50702 * 109.46791 * 240.00014 * 2 1 3 5 5 O 1.20819 * 120.00010 * 119.99833 * 4 2 1 6 6 O 1.34224 * 120.00128 * 300.00313 * 4 2 1 7 7 C 1.53000 * 109.47043 * 120.00426 * 2 1 3 8 8 H 1.09000 * 109.46838 * 183.19180 * 7 2 1 9 9 N 1.46901 * 109.47201 * 303.19572 * 7 2 1 10 10 C 1.46894 * 110.99971 * 204.27548 * 9 7 2 11 11 C 1.50703 * 109.47142 * 185.16136 * 10 9 7 12 12 H 1.07998 * 120.00130 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00001 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00035 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99968 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47160 * 59.99867 * 15 13 11 17 17 H 1.48500 * 109.47261 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47279 * 300.00238 * 15 13 11 19 19 C 1.50703 * 109.47078 * 63.19542 * 7 2 1 20 20 C 1.38237 * 120.00113 * 279.72529 * 19 7 2 21 21 C 1.38228 * 119.99902 * 179.81295 * 20 19 7 22 22 C 1.38233 * 120.00275 * 0.39401 * 21 20 19 23 23 C 1.38235 * 119.99659 * 359.86126 * 22 21 20 24 24 C 1.38229 * 119.99972 * 100.00087 * 19 7 2 25 25 H 1.09003 * 109.46844 * 299.99862 * 1 2 3 26 26 H 1.08994 * 109.47354 * 59.99494 * 1 2 3 27 27 H 1.08999 * 109.47424 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47201 * 173.75853 * 3 2 1 29 29 H 1.08994 * 109.47576 * 293.75964 * 3 2 1 30 30 H 1.09005 * 109.47325 * 53.76408 * 3 2 1 31 31 H 0.96701 * 117.00006 * 179.97438 * 6 4 2 32 32 H 1.00904 * 110.99460 * 328.22650 * 9 7 2 33 33 H 1.09002 * 109.47260 * 305.16053 * 10 9 7 34 34 H 1.09006 * 109.47243 * 65.15985 * 10 9 7 35 35 H 0.96995 * 119.99718 * 179.97438 * 14 13 11 36 36 H 1.07998 * 119.99586 * 359.97438 * 20 19 7 37 37 H 1.08009 * 119.99955 * 180.22776 * 21 20 19 38 38 H 1.07998 * 120.00553 * 179.83353 * 22 21 20 39 39 H 1.08000 * 119.99959 * 179.97438 * 23 22 21 40 40 H 1.08006 * 120.00307 * 359.97438 * 24 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7269 -0.1233 -2.0258 6 8 1.7080 -1.9954 -1.4430 7 6 2.0400 -0.7213 1.2492 8 1 3.1285 -0.6720 1.2782 9 7 1.4884 -0.0750 2.4474 10 6 2.3434 -0.3170 3.6171 11 6 1.6840 0.2507 4.8475 12 1 0.7254 0.7418 4.7686 13 6 2.3041 0.1422 6.0742 14 7 3.4713 -0.4562 6.1705 15 14 1.4871 0.8466 7.5993 16 1 0.1707 0.1904 7.8034 17 1 2.3515 0.6018 8.7817 18 1 1.2899 2.3081 7.4250 19 6 1.6034 -2.1632 1.2101 20 6 0.3180 -2.5065 1.5853 21 6 -0.0837 -3.8286 1.5457 22 6 0.8025 -4.8084 1.1388 23 6 2.0895 -4.4656 0.7687 24 6 2.4900 -3.1431 0.8045 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1243 1.4444 0.1117 29 1 1.7709 1.9230 -0.9405 30 1 1.5885 1.9875 0.8289 31 1 2.0534 -2.4084 -2.2463 32 1 1.3545 0.9136 2.2957 33 1 2.4890 -1.3897 3.7450 34 1 3.3094 0.1654 3.4671 35 1 3.9076 -0.5322 7.0334 36 1 -0.3732 -1.7415 1.9068 37 1 -1.0892 -4.0964 1.8353 38 1 0.4895 -5.8416 1.1104 39 1 2.7820 -5.2311 0.4511 40 1 3.4956 -2.8754 0.5153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609648648.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:02 Heat of formation + Delta-G solvation = -87.181348 kcal Electronic energy + Delta-G solvation = -22469.495777 eV Core-core repulsion = 19248.096968 eV Total energy + Delta-G solvation = -3221.398809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94112 -40.05605 -38.13604 -37.06110 -35.50856 -33.73609 -31.94645 -31.59248 -28.77288 -28.14145 -26.72979 -24.87801 -23.59608 -23.09941 -21.98354 -20.42431 -19.08902 -18.52102 -17.88909 -17.18540 -17.07928 -16.51694 -16.15051 -15.90529 -15.57584 -14.99100 -14.72985 -14.33846 -14.31087 -14.16952 -13.93200 -13.57876 -13.27138 -13.22217 -12.99761 -12.80290 -12.75485 -12.59127 -12.44629 -12.39495 -12.09227 -11.93287 -11.72991 -11.51761 -11.38550 -11.21393 -10.62203 -9.54116 -9.37324 -9.19042 -8.18714 -6.29285 0.66064 0.74681 1.16738 1.43503 1.46556 1.54203 2.12096 2.42459 3.06975 3.15207 3.42107 3.53673 3.82877 3.90307 4.16436 4.20945 4.35356 4.43399 4.44425 4.53994 4.69527 4.78114 4.83783 4.89142 4.94628 4.98386 5.11256 5.14893 5.25011 5.29123 5.37412 5.41167 5.60269 5.63133 5.74728 5.81668 5.92775 6.07739 6.33931 6.43812 6.70959 6.90985 7.02277 7.41348 8.92544 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017283 B = 0.005996 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.721367 B = 4668.483744 C = 5556.634080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.048 4.048 3 C -0.137 4.137 4 C 0.499 3.501 5 O -0.548 6.548 6 O -0.490 6.490 7 C 0.138 3.862 8 H 0.021 0.979 9 N -0.661 5.661 10 C 0.218 3.782 11 C -0.527 4.527 12 H 0.070 0.930 13 C 0.001 3.999 14 N -0.936 5.936 15 Si 0.970 3.030 16 H -0.268 1.268 17 H -0.287 1.287 18 H -0.265 1.265 19 C -0.070 4.070 20 C -0.090 4.090 21 C -0.137 4.137 22 C -0.125 4.125 23 C -0.128 4.128 24 C -0.113 4.113 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.418 0.582 32 H 0.340 0.660 33 H -0.003 1.003 34 H -0.044 1.044 35 H 0.263 0.737 36 H 0.124 0.876 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.136 0.864 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -4.508 -14.344 16.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.049 4.049 3 C -0.194 4.194 4 C 0.342 3.658 5 O -0.440 6.440 6 O -0.301 6.301 7 C 0.028 3.972 8 H 0.039 0.961 9 N -0.293 5.293 10 C 0.090 3.910 11 C -0.565 4.565 12 H 0.088 0.912 13 C -0.197 4.197 14 N -0.576 5.576 15 Si 0.795 3.205 16 H -0.193 1.193 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.071 4.071 20 C -0.108 4.108 21 C -0.155 4.155 22 C -0.143 4.143 23 C -0.146 4.146 24 C -0.132 4.132 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.278 0.722 32 H 0.160 0.840 33 H 0.015 0.985 34 H -0.026 1.026 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.209 -4.728 -13.934 16.386 hybrid contribution 1.406 0.595 0.264 1.550 sum -5.803 -4.133 -13.670 15.415 Atomic orbital electron populations 1.21924 0.89391 1.04199 1.03579 1.20671 1.00095 0.95239 0.88921 1.21836 1.01033 0.92663 1.03908 1.23282 0.75702 0.80293 0.86477 1.90668 1.37445 1.67976 1.47862 1.84757 1.71364 1.25459 1.48529 1.20288 0.95124 0.92212 0.89596 0.96067 1.60628 1.49779 1.17222 1.01697 1.19130 0.89237 0.94536 0.88099 1.21482 1.05707 1.36805 0.92556 0.91195 1.25927 0.95434 0.95722 1.02631 1.70100 1.17002 1.44649 1.25868 0.85423 0.78256 0.79142 0.77698 1.19290 1.21303 1.18996 1.19614 0.94807 0.93611 0.99058 1.21061 0.95782 0.96725 0.97274 1.21386 1.00651 0.92882 1.00608 1.21337 0.93672 0.99955 0.99346 1.21178 0.96927 0.95487 1.01033 1.20910 0.98314 0.93742 1.00197 0.89822 0.91133 0.90670 0.93376 0.90247 0.89778 0.72189 0.83963 0.98535 1.02618 0.92836 0.85759 0.84775 0.84189 0.84619 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 7.29 71.98 0.52 -2.69 16 2 C -0.05 -1.34 0.53 -52.93 -0.03 -1.37 16 3 C -0.14 -3.69 7.52 71.98 0.54 -3.15 16 4 C 0.50 13.83 6.78 71.24 0.48 14.31 16 5 O -0.55 -17.66 16.65 21.98 0.37 -17.29 16 6 O -0.49 -11.00 9.85 -51.36 -0.51 -11.51 16 7 C 0.14 4.83 1.59 44.17 0.07 4.90 16 8 H 0.02 0.85 7.73 -2.39 -0.02 0.83 16 9 N -0.66 -26.33 4.71 -499.46 -2.35 -28.69 16 10 C 0.22 11.37 5.21 85.56 0.45 11.82 16 11 C -0.53 -29.19 9.36 25.60 0.24 -28.95 16 12 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 13 C 0.00 0.05 5.46 84.65 0.46 0.51 16 14 N -0.94 -56.59 13.29 21.45 0.28 -56.30 16 15 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 C -0.07 -2.35 3.07 -19.87 -0.06 -2.41 16 20 C -0.09 -2.89 7.23 22.27 0.16 -2.73 16 21 C -0.14 -3.78 10.05 22.27 0.22 -3.56 16 22 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 23 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 24 C -0.11 -3.50 7.57 22.27 0.17 -3.33 16 25 H 0.08 2.04 7.30 -2.39 -0.02 2.02 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.07 1.85 5.57 -2.39 -0.01 1.84 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.93 7.91 -2.39 -0.02 1.91 16 30 H 0.08 2.10 6.58 -2.38 -0.02 2.09 16 31 H 0.42 5.77 9.10 -74.06 -0.67 5.10 16 32 H 0.34 12.51 6.20 -89.69 -0.56 11.96 16 33 H 0.00 -0.21 7.89 -2.39 -0.02 -0.22 16 34 H -0.04 -2.51 8.14 -2.38 -0.02 -2.53 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.12 4.05 6.85 -2.91 -0.02 4.03 16 37 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 38 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.10 3.14 8.04 -2.91 -0.02 3.12 16 Total: -1.00 -68.43 324.98 3.32 -65.11 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: -0.18 Total: 25.57 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 3.68 Total: -22.69 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -2.07 Total: -84.99 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.14 Total: -28.80 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -68.43 3.32 -65.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609648648.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.075 kcal (2) G-P(sol) polarization free energy of solvation -68.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds