Wall clock time and date at job start Mon Mar 30 2020 01:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47227 * 2 1 4 4 C 1.52999 * 109.47379 * 120.00363 * 2 1 3 5 5 H 1.09001 * 109.46901 * 299.99784 * 4 2 1 6 6 C 1.52996 * 109.47379 * 180.02562 * 4 2 1 7 7 O 1.42902 * 109.47125 * 304.99855 * 6 4 2 8 8 N 1.46496 * 109.47281 * 59.99833 * 4 2 1 9 9 C 1.34774 * 120.00535 * 205.00327 * 8 4 2 10 10 O 1.21611 * 119.99409 * 359.97438 * 9 8 4 11 11 C 1.47428 * 120.00489 * 179.72247 * 9 8 4 12 12 C 1.39221 * 120.28211 * 355.56161 * 11 9 8 13 13 C 1.38217 * 120.09622 * 180.02562 * 12 11 9 14 14 C 1.38830 * 120.67340 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.57090 * 0.02562 * 14 13 12 16 16 C 1.40706 * 119.87971 * 359.67159 * 15 14 13 17 17 C 1.40885 * 120.32862 * 180.29706 * 16 15 14 18 18 H 1.08005 * 119.99495 * 141.63633 * 17 16 15 19 19 C 1.40275 * 120.00426 * 321.64199 * 17 16 15 20 20 N 1.30629 * 120.00248 * 174.14463 * 19 17 16 21 21 Si 1.86794 * 119.99592 * 354.14804 * 19 17 16 22 22 H 1.48505 * 109.47379 * 89.43820 * 21 19 17 23 23 H 1.48501 * 109.46990 * 209.43704 * 21 19 17 24 24 H 1.48502 * 109.47181 * 329.43592 * 21 19 17 25 25 H 1.09006 * 109.47065 * 59.99934 * 1 2 3 26 26 H 1.08997 * 109.46953 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47249 * 299.99919 * 1 2 3 28 28 H 1.09010 * 109.47512 * 240.00266 * 2 1 3 29 29 H 1.09000 * 109.47265 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46804 * 300.00307 * 3 2 1 31 31 H 1.09004 * 109.46558 * 60.00199 * 3 2 1 32 32 H 1.09001 * 109.47038 * 64.99560 * 6 4 2 33 33 H 1.09002 * 109.47422 * 184.99639 * 6 4 2 34 34 H 0.96702 * 113.99922 * 179.97438 * 7 6 4 35 35 H 0.97007 * 119.99839 * 25.00150 * 8 4 2 36 36 H 1.08004 * 119.95259 * 0.02562 * 12 11 9 37 37 H 1.08002 * 119.66698 * 180.02562 * 13 12 11 38 38 H 1.07999 * 119.71751 * 179.97438 * 14 13 12 39 39 H 1.07995 * 120.05728 * 179.97438 * 15 14 13 40 40 H 0.96989 * 119.99833 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7208 1.2495 7 8 4.0468 -1.2897 0.0284 8 7 1.5517 -2.1025 1.2492 9 6 1.4230 -2.7719 2.4118 10 8 1.7126 -2.2293 3.4610 11 6 0.9258 -4.1598 2.4123 12 6 0.5005 -4.7536 1.2271 13 6 0.0346 -6.0549 1.2321 14 6 -0.0164 -6.7843 2.4122 15 6 0.3959 -6.2243 3.5996 16 6 0.8805 -4.9034 3.6206 17 6 1.3110 -4.3228 4.8299 18 1 2.1753 -3.6752 4.8404 19 6 0.6172 -4.5858 6.0204 20 7 1.0806 -4.1420 7.1582 21 14 -0.9694 -5.5708 5.9785 22 1 -0.6586 -7.0163 6.1180 23 1 -1.8472 -5.1431 7.0974 24 1 -1.6638 -5.3361 4.6870 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 3.9329 0.3031 1.3393 33 1 3.9334 -1.3102 2.0913 34 1 5.0108 -1.3213 -0.0407 35 1 1.3210 -2.5354 0.4122 36 1 0.5348 -4.1967 0.3024 37 1 -0.2932 -6.5088 0.3086 38 1 -0.3837 -7.7999 2.3984 39 1 0.3523 -6.7991 4.5127 40 1 0.6007 -4.3236 7.9812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001637853231.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:01 Heat of formation + Delta-G solvation = -76.828189 kcal Electronic energy + Delta-G solvation = -22018.533242 eV Core-core repulsion = 18797.583380 eV Total energy + Delta-G solvation = -3220.949862 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.42306 -37.85882 -36.53117 -35.27830 -33.68801 -32.62175 -30.44097 -30.15490 -28.28082 -26.84319 -25.28461 -23.31777 -22.14408 -21.02377 -19.90890 -19.28516 -17.55231 -17.18263 -16.66203 -15.75595 -15.30500 -14.86994 -14.68931 -14.07828 -14.02362 -13.73039 -13.44990 -13.19209 -12.77645 -12.64472 -12.57470 -12.17541 -12.09958 -11.93504 -11.82189 -11.48054 -11.02583 -10.92863 -10.70021 -10.68393 -10.48859 -10.39786 -10.08000 -9.79096 -9.76297 -9.24098 -8.46784 -8.32223 -7.79694 -7.56575 -6.85271 -4.43914 2.12600 2.61573 3.10671 3.19423 3.30584 3.91048 3.98565 4.03082 4.47308 4.64617 4.78741 5.00209 5.14245 5.39495 5.48705 5.53614 5.60509 5.69835 5.77713 5.82039 5.88696 5.95252 5.98542 6.00336 6.10546 6.17397 6.31934 6.40979 6.50027 6.54647 6.81626 7.12020 7.19154 7.26573 7.41047 7.60158 7.72989 7.77387 8.02952 8.39702 8.50841 8.65626 8.86067 9.39391 10.13112 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.005649 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.787916 B = 4955.608571 C = 5493.301547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.143 4.143 4 C 0.158 3.842 5 H 0.095 0.905 6 C 0.062 3.938 7 O -0.568 6.568 8 N -0.734 5.734 9 C 0.561 3.439 10 O -0.529 6.529 11 C -0.244 4.244 12 C -0.042 4.042 13 C -0.252 4.252 14 C -0.066 4.066 15 C -0.227 4.227 16 C 0.118 3.882 17 C -0.397 4.397 18 H 0.114 0.886 19 C 0.079 3.921 20 N -0.799 5.799 21 Si 0.908 3.092 22 H -0.269 1.269 23 H -0.290 1.290 24 H -0.243 1.243 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.372 0.628 35 H 0.393 0.607 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.773 5.671 -11.870 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.201 4.201 4 C 0.052 3.948 5 H 0.112 0.888 6 C -0.017 4.017 7 O -0.372 6.372 8 N -0.388 5.388 9 C 0.354 3.646 10 O -0.407 6.407 11 C -0.249 4.249 12 C -0.061 4.061 13 C -0.271 4.271 14 C -0.085 4.085 15 C -0.246 4.246 16 C 0.113 3.887 17 C -0.424 4.424 18 H 0.132 0.868 19 C -0.141 4.141 20 N -0.423 5.423 21 Si 0.735 3.265 22 H -0.195 1.195 23 H -0.218 1.218 24 H -0.167 1.167 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.218 0.782 35 H 0.227 0.773 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.358 6.094 -10.891 12.485 hybrid contribution -0.156 -0.634 -0.131 0.666 sum 0.202 5.460 -11.022 12.302 Atomic orbital electron populations 1.21839 0.94983 1.02243 1.01400 1.21263 0.95829 0.96214 0.98443 1.21823 1.01136 0.95487 1.01675 1.20887 0.90966 0.84098 0.98818 0.88755 1.22728 0.95750 0.96600 0.86632 1.86458 1.26012 1.85364 1.39388 1.45943 1.69920 1.13399 1.09514 1.18367 0.77278 0.86339 0.82636 1.90757 1.49951 1.69316 1.30639 1.19481 1.16825 0.93485 0.95116 1.20802 0.95315 0.94571 0.95412 1.20304 1.13730 0.96082 0.97003 1.20743 0.96788 0.97772 0.93168 1.21181 1.10346 0.96001 0.97027 1.17575 0.88203 0.90215 0.92695 1.19922 1.11586 1.22133 0.88778 0.86814 1.26291 0.99499 0.93753 0.94526 1.69543 1.37715 1.35817 0.99274 0.86396 0.81455 0.79498 0.79194 1.19485 1.21761 1.16650 0.92946 0.92262 0.92673 0.90054 0.92420 0.92650 0.92671 0.93397 0.92880 0.78188 0.77257 0.88639 0.88518 0.88568 0.87728 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.04 37.16 0.34 -1.42 16 2 C -0.10 -1.20 2.36 -90.62 -0.21 -1.41 16 3 C -0.14 -1.47 8.84 37.16 0.33 -1.14 16 4 C 0.16 2.42 1.95 -67.93 -0.13 2.29 16 5 H 0.09 1.62 7.58 -51.93 -0.39 1.22 16 6 C 0.06 0.88 6.34 37.16 0.24 1.11 16 7 O -0.57 -7.34 12.73 -35.23 -0.45 -7.79 16 8 N -0.73 -12.99 4.28 -54.88 -0.23 -13.23 16 9 C 0.56 12.80 7.69 -12.52 -0.10 12.71 16 10 O -0.53 -14.00 13.33 5.27 0.07 -13.93 16 11 C -0.24 -5.79 5.92 -104.37 -0.62 -6.41 16 12 C -0.04 -0.86 9.52 -39.22 -0.37 -1.23 16 13 C -0.25 -5.01 10.03 -39.37 -0.39 -5.40 16 14 C -0.07 -1.39 10.01 -39.59 -0.40 -1.78 16 15 C -0.23 -5.40 6.94 -38.88 -0.27 -5.67 16 16 C 0.12 3.06 5.04 -106.54 -0.54 2.52 16 17 C -0.40 -11.23 8.08 -37.82 -0.31 -11.53 16 18 H 0.11 3.55 6.36 -52.48 -0.33 3.21 16 19 C 0.08 2.13 5.50 -17.30 -0.10 2.03 16 20 N -0.80 -22.04 13.92 55.56 0.77 -21.27 16 21 Si 0.91 21.09 24.48 -169.99 -4.16 16.93 16 22 H -0.27 -5.93 6.70 56.52 0.38 -5.55 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.24 -5.79 6.68 56.52 0.38 -5.41 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.02 7.56 -51.92 -0.39 0.63 16 29 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.57 6.71 -51.93 -0.35 0.22 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.37 3.26 9.12 45.56 0.42 3.68 16 35 H 0.39 6.26 6.44 -40.82 -0.26 6.00 16 36 H 0.10 1.61 6.42 -52.48 -0.34 1.27 16 37 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 39 H 0.11 2.46 4.88 -52.49 -0.26 2.20 16 40 H 0.29 7.10 8.29 -40.82 -0.34 6.76 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -31.03 320.66 -6.48 -37.51 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -4.78 Total: 12.28 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -2.53 Total: -15.33 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: 0.54 Total: -34.49 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.38 Total: -21.72 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.16 Total: 16.93 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.03 -6.48 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637853231.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.317 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds