Wall clock time and date at job start Mon Mar 30 2020 01:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47227 * 2 1 4 4 C 1.52999 * 109.47379 * 120.00363 * 2 1 3 5 5 H 1.09001 * 109.46901 * 299.99784 * 4 2 1 6 6 C 1.52996 * 109.47379 * 180.02562 * 4 2 1 7 7 O 1.42902 * 109.47125 * 304.99855 * 6 4 2 8 8 N 1.46496 * 109.47281 * 59.99833 * 4 2 1 9 9 C 1.34774 * 120.00535 * 205.00327 * 8 4 2 10 10 O 1.21611 * 119.99409 * 359.97438 * 9 8 4 11 11 C 1.47428 * 120.00489 * 179.72247 * 9 8 4 12 12 C 1.39221 * 120.28211 * 355.56161 * 11 9 8 13 13 C 1.38217 * 120.09622 * 180.02562 * 12 11 9 14 14 C 1.38830 * 120.67340 * 0.02562 * 13 12 11 15 15 C 1.37603 * 120.57090 * 0.02562 * 14 13 12 16 16 C 1.40706 * 119.87971 * 359.67159 * 15 14 13 17 17 C 1.40885 * 120.32862 * 180.29706 * 16 15 14 18 18 H 1.08005 * 119.99495 * 141.63633 * 17 16 15 19 19 C 1.40275 * 120.00426 * 321.64199 * 17 16 15 20 20 N 1.30629 * 120.00248 * 174.14463 * 19 17 16 21 21 Si 1.86794 * 119.99592 * 354.14804 * 19 17 16 22 22 H 1.48505 * 109.47379 * 89.43820 * 21 19 17 23 23 H 1.48501 * 109.46990 * 209.43704 * 21 19 17 24 24 H 1.48502 * 109.47181 * 329.43592 * 21 19 17 25 25 H 1.09006 * 109.47065 * 59.99934 * 1 2 3 26 26 H 1.08997 * 109.46953 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47249 * 299.99919 * 1 2 3 28 28 H 1.09010 * 109.47512 * 240.00266 * 2 1 3 29 29 H 1.09000 * 109.47265 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46804 * 300.00307 * 3 2 1 31 31 H 1.09004 * 109.46558 * 60.00199 * 3 2 1 32 32 H 1.09001 * 109.47038 * 64.99560 * 6 4 2 33 33 H 1.09002 * 109.47422 * 184.99639 * 6 4 2 34 34 H 0.96702 * 113.99922 * 179.97438 * 7 6 4 35 35 H 0.97007 * 119.99839 * 25.00150 * 8 4 2 36 36 H 1.08004 * 119.95259 * 0.02562 * 12 11 9 37 37 H 1.08002 * 119.66698 * 180.02562 * 13 12 11 38 38 H 1.07999 * 119.71751 * 179.97438 * 14 13 12 39 39 H 1.07995 * 120.05728 * 179.97438 * 15 14 13 40 40 H 0.96989 * 119.99833 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 3.5700 -0.7208 1.2495 7 8 4.0468 -1.2897 0.0284 8 7 1.5517 -2.1025 1.2492 9 6 1.4230 -2.7719 2.4118 10 8 1.7126 -2.2293 3.4610 11 6 0.9258 -4.1598 2.4123 12 6 0.5005 -4.7536 1.2271 13 6 0.0346 -6.0549 1.2321 14 6 -0.0164 -6.7843 2.4122 15 6 0.3959 -6.2243 3.5996 16 6 0.8805 -4.9034 3.6206 17 6 1.3110 -4.3228 4.8299 18 1 2.1753 -3.6752 4.8404 19 6 0.6172 -4.5858 6.0204 20 7 1.0806 -4.1420 7.1582 21 14 -0.9694 -5.5708 5.9785 22 1 -0.6586 -7.0163 6.1180 23 1 -1.8472 -5.1431 7.0974 24 1 -1.6638 -5.3361 4.6870 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8901 32 1 3.9329 0.3031 1.3393 33 1 3.9334 -1.3102 2.0913 34 1 5.0108 -1.3213 -0.0407 35 1 1.3210 -2.5354 0.4122 36 1 0.5348 -4.1967 0.3024 37 1 -0.2932 -6.5088 0.3086 38 1 -0.3837 -7.7999 2.3984 39 1 0.3523 -6.7991 4.5127 40 1 0.6007 -4.3236 7.9812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001637853231.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:00 Heat of formation + Delta-G solvation = -100.284069 kcal Electronic energy + Delta-G solvation = -22019.550366 eV Core-core repulsion = 18797.583380 eV Total energy + Delta-G solvation = -3221.966985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04159 -39.35864 -38.13773 -36.40924 -35.55506 -34.16045 -32.29248 -31.78622 -29.51401 -27.88556 -27.08778 -24.72215 -23.71697 -22.72664 -21.28580 -20.80763 -19.42570 -18.36785 -18.25556 -17.18408 -17.08044 -16.22628 -15.93654 -15.80364 -15.55538 -15.44531 -15.02247 -14.49388 -14.41154 -14.15596 -13.85984 -13.70402 -13.34593 -13.26958 -13.06346 -12.86918 -12.68959 -12.53751 -12.19443 -12.04516 -11.91767 -11.72655 -11.61399 -11.51567 -11.08517 -10.92592 -10.31689 -9.91616 -9.51451 -9.40391 -8.79931 -6.46745 0.34511 0.82776 1.23321 1.36409 1.45682 2.10682 2.27394 2.43335 2.72553 3.39825 3.53053 3.70061 3.97281 4.14791 4.22393 4.24513 4.37559 4.42953 4.46281 4.59840 4.67757 4.75479 4.81282 4.82454 4.93015 4.99871 5.03549 5.05259 5.23165 5.31045 5.41963 5.45359 5.47610 5.67106 5.73196 5.86635 5.95374 6.26006 6.45695 6.67849 6.78814 6.85471 6.92870 7.66315 8.25833 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020273 B = 0.005649 C = 0.005096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.787916 B = 4955.608571 C = 5493.301547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.141 4.141 4 C 0.149 3.851 5 H 0.069 0.931 6 C 0.071 3.929 7 O -0.571 6.571 8 N -0.712 5.712 9 C 0.554 3.446 10 O -0.577 6.577 11 C -0.262 4.262 12 C -0.042 4.042 13 C -0.226 4.226 14 C -0.063 4.063 15 C -0.246 4.246 16 C 0.099 3.901 17 C -0.442 4.442 18 H 0.061 0.939 19 C 0.034 3.966 20 N -0.856 5.856 21 Si 0.969 3.031 22 H -0.247 1.247 23 H -0.282 1.282 24 H -0.250 1.250 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.014 0.986 34 H 0.392 0.608 35 H 0.405 0.595 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.138 0.862 39 H 0.103 0.897 40 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.823 4.526 -16.226 16.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.199 4.199 4 C 0.044 3.956 5 H 0.087 0.913 6 C -0.008 4.008 7 O -0.379 6.379 8 N -0.366 5.366 9 C 0.346 3.654 10 O -0.458 6.458 11 C -0.266 4.266 12 C -0.061 4.061 13 C -0.245 4.245 14 C -0.081 4.081 15 C -0.265 4.265 16 C 0.095 3.905 17 C -0.471 4.471 18 H 0.079 0.921 19 C -0.179 4.179 20 N -0.483 5.483 21 Si 0.791 3.209 22 H -0.172 1.172 23 H -0.209 1.209 24 H -0.174 1.174 25 H 0.095 0.905 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.032 0.968 34 H 0.241 0.759 35 H 0.242 0.758 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.121 0.879 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.212 4.947 -15.313 16.138 hybrid contribution 0.396 -0.276 0.829 0.959 sum -0.816 4.671 -14.484 15.240 Atomic orbital electron populations 1.21850 0.94707 1.01811 1.02088 1.21206 0.95965 0.97055 0.96325 1.21820 1.01496 0.94013 1.02561 1.21118 0.91977 0.82678 0.99786 0.91329 1.22490 0.94853 0.97521 0.85931 1.86391 1.28099 1.85313 1.38062 1.45727 1.68360 1.14124 1.08346 1.18525 0.76976 0.86607 0.83250 1.90755 1.52007 1.70246 1.32792 1.19890 1.16695 0.94077 0.95962 1.21225 0.93962 0.95390 0.95486 1.20962 1.09907 0.95244 0.98411 1.21261 0.94999 0.99663 0.92150 1.21288 1.11387 0.95125 0.98657 1.17834 0.88524 0.91456 0.92653 1.19667 1.12327 1.24001 0.91139 0.92134 1.27038 1.02338 0.94720 0.93794 1.69607 1.39782 1.38945 0.99992 0.85486 0.77424 0.79187 0.78761 1.17151 1.20871 1.17409 0.90452 0.93247 0.93816 0.89395 0.91885 0.90611 0.92978 0.90599 0.96750 0.75859 0.75821 0.84593 0.83724 0.84423 0.87894 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.04 71.98 0.65 -2.55 16 2 C -0.09 -1.92 2.36 -10.79 -0.03 -1.95 16 3 C -0.14 -2.53 8.84 71.98 0.64 -1.89 16 4 C 0.15 4.57 1.95 44.99 0.09 4.66 16 5 H 0.07 2.47 7.58 -2.39 -0.02 2.46 16 6 C 0.07 2.01 6.34 71.98 0.46 2.46 16 7 O -0.57 -13.68 12.73 -148.98 -1.90 -15.57 16 8 N -0.71 -25.01 4.28 -445.81 -1.91 -26.92 16 9 C 0.55 26.23 7.69 86.66 0.67 26.90 16 10 O -0.58 -33.11 13.33 -4.07 -0.05 -33.17 16 11 C -0.26 -12.39 5.92 -19.70 -0.12 -12.51 16 12 C -0.04 -1.55 9.52 22.50 0.21 -1.34 16 13 C -0.23 -7.69 10.03 22.41 0.22 -7.46 16 14 C -0.06 -2.34 10.01 22.26 0.22 -2.12 16 15 C -0.25 -11.41 6.94 22.72 0.16 -11.25 16 16 C 0.10 5.29 5.04 -21.11 -0.11 5.19 16 17 C -0.44 -27.01 8.08 23.41 0.19 -26.82 16 18 H 0.06 4.22 6.36 -2.91 -0.02 4.21 16 19 C 0.03 1.95 5.50 85.37 0.47 2.42 16 20 N -0.86 -51.02 13.92 21.88 0.30 -50.71 16 21 Si 0.97 44.70 24.48 68.60 1.68 46.38 16 22 H -0.25 -10.34 6.70 99.48 0.67 -9.68 16 23 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.25 -11.62 6.68 99.48 0.66 -10.96 16 25 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.05 1.15 7.45 -2.39 -0.02 1.14 16 27 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 1.89 7.56 -2.38 -0.02 1.87 16 29 H 0.06 1.07 6.54 -2.39 -0.02 1.05 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.08 1.72 6.71 -2.39 -0.02 1.71 16 33 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.39 6.05 9.12 -74.06 -0.68 5.38 16 35 H 0.40 11.97 6.44 -92.70 -0.60 11.38 16 36 H 0.14 3.87 6.42 -2.91 -0.02 3.85 16 37 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 39 H 0.10 4.75 4.88 -2.91 -0.01 4.74 16 40 H 0.29 15.56 8.29 -92.72 -0.77 14.79 16 Total: -1.00 -75.05 320.66 1.57 -73.48 By element: Atomic # 1 Polarization: 33.05 SS G_CDS: -0.28 Total: 32.77 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.73 Total: -26.26 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -1.60 Total: -77.63 kcal Atomic # 8 Polarization: -46.79 SS G_CDS: -1.95 Total: -48.74 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.68 Total: 46.38 kcal Total: -75.05 1.57 -73.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001637853231.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.806 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds