Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46869 * 2 1 4 4 C 1.52997 * 109.47008 * 240.00017 * 2 1 3 5 5 H 1.09000 * 109.47474 * 60.00257 * 4 2 1 6 6 C 1.52995 * 109.47000 * 299.99695 * 4 2 1 7 7 O 1.42905 * 109.47325 * 305.00152 * 6 4 2 8 8 N 1.46502 * 109.46846 * 179.97438 * 4 2 1 9 9 C 1.34780 * 120.00153 * 204.99618 * 8 4 2 10 10 O 1.21589 * 119.99686 * 359.97438 * 9 8 4 11 11 C 1.47634 * 120.00059 * 180.02562 * 9 8 4 12 12 C 1.40010 * 119.89989 * 359.72558 * 11 9 8 13 13 C 1.36316 * 120.11234 * 179.71578 * 12 11 9 14 14 C 1.40891 * 119.88898 * 0.58451 * 13 12 11 15 15 C 1.41103 * 120.10251 * 179.67306 * 14 13 12 16 16 H 1.08006 * 119.99796 * 204.64832 * 15 14 13 17 17 C 1.40219 * 120.00379 * 24.65228 * 15 14 13 18 18 N 1.30648 * 120.00040 * 17.85608 * 17 15 14 19 19 Si 1.86803 * 120.00261 * 197.86535 * 17 15 14 20 20 H 1.48505 * 109.47153 * 89.99546 * 19 17 15 21 21 H 1.48495 * 109.47149 * 209.99661 * 19 17 15 22 22 H 1.48499 * 109.46950 * 330.00088 * 19 17 15 23 23 C 1.40894 * 119.79161 * 359.68874 * 14 13 12 24 24 C 1.36317 * 119.89126 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.46793 * 60.00143 * 1 2 3 26 26 H 1.08997 * 109.47114 * 300.00379 * 1 2 3 27 27 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47185 * 119.99485 * 2 1 3 29 29 H 1.09003 * 109.46684 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46796 * 299.99723 * 3 2 1 31 31 H 1.08997 * 109.47562 * 59.99895 * 3 2 1 32 32 H 1.09004 * 109.47416 * 65.00039 * 6 4 2 33 33 H 1.09001 * 109.47286 * 185.00437 * 6 4 2 34 34 H 0.96701 * 114.00016 * 180.02562 * 7 6 4 35 35 H 0.97005 * 119.99745 * 25.00356 * 8 4 2 36 36 H 1.08004 * 119.94560 * 0.02562 * 12 11 9 37 37 H 1.08001 * 120.05393 * 180.25113 * 13 12 11 38 38 H 0.97005 * 120.00376 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.05498 * 179.97438 * 23 14 13 40 40 H 1.08002 * 119.94678 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 1.5300 -2.1637 -1.2492 7 8 1.9081 -2.8026 -0.0281 8 7 3.5050 -0.7207 -1.2495 9 6 4.1788 -0.8224 -2.4124 10 8 3.5706 -0.9151 -3.4612 11 6 5.6551 -0.8224 -2.4126 12 6 6.3532 -0.7109 -1.2041 13 6 7.7163 -0.7162 -1.1987 14 6 8.4228 -0.8219 -2.4131 15 6 9.8339 -0.8209 -2.4133 16 1 10.3735 -0.5060 -3.2943 17 6 10.5355 -1.2289 -1.2699 18 7 9.9302 -1.9275 -0.3466 19 14 12.3357 -0.7735 -1.0666 20 1 12.4401 0.5297 -0.3622 21 1 13.0250 -1.8220 -0.2725 22 1 12.9731 -0.6659 -2.4035 23 6 7.7160 -0.9281 -3.6272 24 6 6.3528 -0.9278 -3.6219 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5137 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9565 0.8899 32 1 0.4437 -2.1651 -1.3387 33 1 1.9647 -2.7028 -2.0909 34 1 1.6176 -3.7223 0.0410 35 1 3.9901 -0.6472 -0.4127 36 1 5.8108 -0.6254 -0.2740 37 1 8.2539 -0.6342 -0.2655 38 1 10.4154 -2.2095 0.4446 39 1 8.2532 -1.0089 -4.5606 40 1 5.8100 -1.0096 -4.5521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648254250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = -90.255969 kcal Electronic energy + Delta-G solvation = -21342.270249 eV Core-core repulsion = 18120.738115 eV Total energy + Delta-G solvation = -3221.532134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.49829 -37.77469 -36.74561 -35.36735 -33.84578 -32.81487 -30.24759 -29.41707 -28.48165 -27.02482 -25.67865 -23.30841 -21.72576 -20.94752 -19.97572 -19.42951 -17.50670 -17.27738 -16.78931 -15.82424 -15.44227 -14.95468 -14.80270 -14.07463 -13.93794 -13.53974 -13.44324 -13.10413 -12.81872 -12.75010 -12.37363 -12.20734 -12.05415 -11.96784 -11.85015 -11.33695 -11.27615 -11.06781 -10.94403 -10.78582 -10.61965 -10.54213 -10.02165 -9.89364 -9.53527 -9.33317 -8.91329 -8.51387 -7.69322 -7.51826 -7.01411 -4.58308 2.26088 2.93078 2.96946 2.99276 3.06179 3.75404 3.81692 3.88864 4.38796 4.59839 4.70857 4.93312 5.07846 5.38083 5.43191 5.51351 5.60216 5.63308 5.71308 5.82057 5.85936 5.91890 6.08797 6.08853 6.13370 6.32141 6.34176 6.42426 6.79203 6.84836 7.00054 7.11513 7.16265 7.46068 7.66407 7.69297 7.82793 7.88490 8.09447 8.31778 8.42360 8.65308 8.77784 9.12642 9.90618 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.003840 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.566937 B = 7289.974825 C = 7571.137154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.100 4.100 3 C -0.148 4.148 4 C 0.156 3.844 5 H 0.093 0.907 6 C 0.062 3.938 7 O -0.566 6.566 8 N -0.727 5.727 9 C 0.572 3.428 10 O -0.581 6.581 11 C -0.283 4.283 12 C -0.061 4.061 13 C -0.178 4.178 14 C 0.129 3.871 15 C -0.444 4.444 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.772 5.772 19 Si 0.914 3.086 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.259 1.259 23 C -0.239 4.239 24 C -0.023 4.023 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.374 0.626 35 H 0.399 0.601 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 1.443 4.517 12.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.205 4.205 4 C 0.051 3.949 5 H 0.111 0.889 6 C -0.017 4.017 7 O -0.371 6.371 8 N -0.379 5.379 9 C 0.367 3.633 10 O -0.464 6.464 11 C -0.288 4.288 12 C -0.080 4.080 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.472 4.472 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.737 3.263 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.183 1.183 23 C -0.259 4.259 24 C -0.042 4.042 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.220 0.780 35 H 0.234 0.766 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.349 1.842 4.121 12.214 hybrid contribution 0.759 -0.522 0.473 1.036 sum -10.590 1.320 4.594 11.619 Atomic orbital electron populations 1.21817 0.94736 1.01804 1.01712 1.21276 0.95955 0.96227 0.98428 1.21847 1.01769 0.95485 1.01427 1.20931 0.81802 0.93309 0.98901 0.88862 1.22706 0.97613 0.94620 0.86734 1.86482 1.81800 1.29627 1.39145 1.45852 1.05406 1.76856 1.09800 1.18598 0.88241 0.74021 0.82416 1.90614 1.70766 1.53169 1.31816 1.18908 0.89949 1.25193 0.94717 1.20484 0.94842 0.98044 0.94664 1.20975 0.92405 1.07466 0.98924 1.17786 0.93276 0.85215 0.91180 1.19851 0.91700 1.36652 0.98979 0.89735 1.26092 1.01574 0.92278 0.94714 1.69750 1.39115 1.22940 1.07697 0.86212 0.80959 0.79351 0.79758 1.18943 1.20033 1.18299 1.20712 0.93194 1.14452 0.97522 1.20359 0.93832 0.94324 0.95688 0.92731 0.92533 0.92420 0.89865 0.92135 0.92770 0.92783 0.93316 0.93114 0.78048 0.76555 0.89321 0.86228 0.90250 0.88442 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.84 37.16 0.33 -1.04 16 2 C -0.10 -1.18 2.36 -90.62 -0.21 -1.39 16 3 C -0.15 -1.71 9.04 37.16 0.34 -1.38 16 4 C 0.16 2.27 1.95 -67.93 -0.13 2.13 16 5 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 6 C 0.06 0.83 6.34 37.15 0.24 1.06 16 7 O -0.57 -7.20 12.73 -35.23 -0.45 -7.65 16 8 N -0.73 -12.60 4.28 -54.82 -0.23 -12.84 16 9 C 0.57 12.32 7.73 -12.42 -0.10 12.23 16 10 O -0.58 -13.77 15.98 5.29 0.08 -13.69 16 11 C -0.28 -6.59 5.89 -104.73 -0.62 -7.20 16 12 C -0.06 -1.39 9.47 -39.61 -0.38 -1.76 16 13 C -0.18 -4.44 8.63 -39.27 -0.34 -4.78 16 14 C 0.13 3.31 5.58 -106.80 -0.60 2.72 16 15 C -0.44 -11.16 9.04 -37.75 -0.34 -11.50 16 16 H 0.08 2.03 7.91 -52.48 -0.42 1.61 16 17 C 0.07 1.75 5.14 -17.31 -0.09 1.67 16 18 N -0.77 -18.68 10.95 55.56 0.61 -18.07 16 19 Si 0.91 17.41 29.60 -169.99 -5.03 12.37 16 20 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 C -0.24 -5.87 9.73 -39.27 -0.38 -6.25 16 24 C -0.02 -0.55 9.52 -39.61 -0.38 -0.92 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.53 6.55 -51.93 -0.34 0.19 16 28 H 0.08 1.04 7.56 -51.93 -0.39 0.65 16 29 H 0.06 0.78 7.44 -51.93 -0.39 0.39 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.52 6.71 -51.93 -0.35 0.18 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.37 3.17 9.12 45.56 0.42 3.58 16 35 H 0.40 6.57 6.39 -40.82 -0.26 6.31 16 36 H 0.09 1.74 6.37 -52.48 -0.33 1.41 16 37 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 38 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -29.06 330.59 -7.55 -36.60 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -4.85 Total: 14.71 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.66 Total: -16.42 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.37 Total: -30.91 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.36 Total: -21.34 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.37 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.06 -7.55 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648254250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.652 kcal (2) G-P(sol) polarization free energy of solvation -29.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds