Wall clock time and date at job start Mon Mar 30 2020 01:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46869 * 2 1 4 4 C 1.52997 * 109.47008 * 240.00017 * 2 1 3 5 5 H 1.09000 * 109.47474 * 60.00257 * 4 2 1 6 6 C 1.52995 * 109.47000 * 299.99695 * 4 2 1 7 7 O 1.42905 * 109.47325 * 305.00152 * 6 4 2 8 8 N 1.46502 * 109.46846 * 179.97438 * 4 2 1 9 9 C 1.34780 * 120.00153 * 204.99618 * 8 4 2 10 10 O 1.21589 * 119.99686 * 359.97438 * 9 8 4 11 11 C 1.47634 * 120.00059 * 180.02562 * 9 8 4 12 12 C 1.40010 * 119.89989 * 359.72558 * 11 9 8 13 13 C 1.36316 * 120.11234 * 179.71578 * 12 11 9 14 14 C 1.40891 * 119.88898 * 0.58451 * 13 12 11 15 15 C 1.41103 * 120.10251 * 179.67306 * 14 13 12 16 16 H 1.08006 * 119.99796 * 204.64832 * 15 14 13 17 17 C 1.40219 * 120.00379 * 24.65228 * 15 14 13 18 18 N 1.30648 * 120.00040 * 17.85608 * 17 15 14 19 19 Si 1.86803 * 120.00261 * 197.86535 * 17 15 14 20 20 H 1.48505 * 109.47153 * 89.99546 * 19 17 15 21 21 H 1.48495 * 109.47149 * 209.99661 * 19 17 15 22 22 H 1.48499 * 109.46950 * 330.00088 * 19 17 15 23 23 C 1.40894 * 119.79161 * 359.68874 * 14 13 12 24 24 C 1.36317 * 119.89126 * 0.02562 * 23 14 13 25 25 H 1.09000 * 109.46793 * 60.00143 * 1 2 3 26 26 H 1.08997 * 109.47114 * 300.00379 * 1 2 3 27 27 H 1.08994 * 109.47256 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47185 * 119.99485 * 2 1 3 29 29 H 1.09003 * 109.46684 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46796 * 299.99723 * 3 2 1 31 31 H 1.08997 * 109.47562 * 59.99895 * 3 2 1 32 32 H 1.09004 * 109.47416 * 65.00039 * 6 4 2 33 33 H 1.09001 * 109.47286 * 185.00437 * 6 4 2 34 34 H 0.96701 * 114.00016 * 180.02562 * 7 6 4 35 35 H 0.97005 * 119.99745 * 25.00356 * 8 4 2 36 36 H 1.08004 * 119.94560 * 0.02562 * 12 11 9 37 37 H 1.08001 * 120.05393 * 180.25113 * 13 12 11 38 38 H 0.97005 * 120.00376 * 180.02562 * 18 17 15 39 39 H 1.07999 * 120.05498 * 179.97438 * 23 14 13 40 40 H 1.08002 * 119.94678 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 6 1.5300 -2.1637 -1.2492 7 8 1.9081 -2.8026 -0.0281 8 7 3.5050 -0.7207 -1.2495 9 6 4.1788 -0.8224 -2.4124 10 8 3.5706 -0.9151 -3.4612 11 6 5.6551 -0.8224 -2.4126 12 6 6.3532 -0.7109 -1.2041 13 6 7.7163 -0.7162 -1.1987 14 6 8.4228 -0.8219 -2.4131 15 6 9.8339 -0.8209 -2.4133 16 1 10.3735 -0.5060 -3.2943 17 6 10.5355 -1.2289 -1.2699 18 7 9.9302 -1.9275 -0.3466 19 14 12.3357 -0.7735 -1.0666 20 1 12.4401 0.5297 -0.3622 21 1 13.0250 -1.8220 -0.2725 22 1 12.9731 -0.6659 -2.4035 23 6 7.7160 -0.9281 -3.6272 24 6 6.3528 -0.9278 -3.6219 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5137 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9565 0.8899 32 1 0.4437 -2.1651 -1.3387 33 1 1.9647 -2.7028 -2.0909 34 1 1.6176 -3.7223 0.0410 35 1 3.9901 -0.6472 -0.4127 36 1 5.8108 -0.6254 -0.2740 37 1 8.2539 -0.6342 -0.2655 38 1 10.4154 -2.2095 0.4446 39 1 8.2532 -1.0089 -4.5606 40 1 5.8100 -1.0096 -4.5521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648254250.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:03 Heat of formation + Delta-G solvation = -109.036875 kcal Electronic energy + Delta-G solvation = -21343.084650 eV Core-core repulsion = 18120.738115 eV Total energy + Delta-G solvation = -3222.346535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.02829 -39.31299 -38.30805 -36.41347 -35.66844 -34.21598 -31.99893 -31.29986 -29.67710 -28.10588 -27.27771 -24.58473 -23.32702 -22.78944 -21.24438 -20.94659 -19.36601 -18.35377 -18.33896 -17.29567 -17.04209 -16.23299 -15.92702 -15.74737 -15.51393 -15.08486 -14.99627 -14.46984 -14.31749 -13.95460 -13.78741 -13.67223 -13.33095 -13.25387 -13.04772 -12.87368 -12.84121 -12.63206 -12.37493 -12.00552 -11.76919 -11.73388 -11.55216 -11.36130 -11.13063 -10.95762 -10.61570 -9.99275 -9.57790 -9.40544 -8.79298 -6.48652 0.44526 1.14433 1.38913 1.43728 1.53576 2.13122 2.17900 2.39858 2.78761 3.41289 3.68312 3.70005 3.96636 4.14320 4.26037 4.30104 4.39780 4.44462 4.45769 4.58606 4.72233 4.80823 4.88876 4.92168 5.00248 5.03306 5.04762 5.15899 5.23657 5.29622 5.41586 5.45030 5.57587 5.67531 5.82900 5.95067 5.99347 6.22241 6.53723 6.73349 6.77012 6.87506 6.88801 7.46178 8.16031 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027591 B = 0.003840 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.566937 B = 7289.974825 C = 7571.137154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.148 4.148 4 C 0.147 3.853 5 H 0.081 0.919 6 C 0.069 3.931 7 O -0.577 6.577 8 N -0.712 5.712 9 C 0.572 3.428 10 O -0.607 6.607 11 C -0.294 4.294 12 C -0.053 4.053 13 C -0.198 4.198 14 C 0.102 3.898 15 C -0.475 4.475 16 H 0.086 0.914 17 C 0.038 3.962 18 N -0.799 5.799 19 Si 0.989 3.011 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.257 1.257 23 C -0.253 4.253 24 C -0.033 4.033 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.022 0.978 34 H 0.393 0.607 35 H 0.404 0.596 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.297 0.703 39 H 0.104 0.896 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 1.650 6.065 13.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 C -0.205 4.205 4 C 0.043 3.957 5 H 0.099 0.901 6 C -0.010 4.010 7 O -0.384 6.384 8 N -0.362 5.362 9 C 0.366 3.634 10 O -0.492 6.492 11 C -0.298 4.298 12 C -0.072 4.072 13 C -0.217 4.217 14 C 0.099 3.901 15 C -0.502 4.502 16 H 0.104 0.896 17 C -0.181 4.181 18 N -0.422 5.422 19 Si 0.808 3.192 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.181 1.181 23 C -0.272 4.272 24 C -0.052 4.052 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.041 0.959 34 H 0.242 0.758 35 H 0.240 0.760 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.023 2.031 5.699 13.460 hybrid contribution 0.852 -0.624 0.019 1.056 sum -11.171 1.407 5.718 12.628 Atomic orbital electron populations 1.21801 0.92615 1.02574 1.02702 1.21227 0.97581 0.95685 0.96487 1.21855 1.00715 0.95667 1.02299 1.21225 0.79683 0.94799 1.00008 0.90057 1.22558 0.99165 0.93250 0.86044 1.86429 1.82234 1.31314 1.38454 1.45753 1.06901 1.74979 1.08589 1.18380 0.87636 0.74196 0.83209 1.90594 1.71011 1.54584 1.32973 1.19211 0.91339 1.24606 0.94659 1.20695 0.94283 0.96526 0.95713 1.21002 0.93272 1.08983 0.98450 1.18131 0.94163 0.85980 0.91862 1.20124 0.91878 1.37934 1.00235 0.89636 1.26937 1.06020 0.91421 0.93716 1.69771 1.41184 1.23023 1.08246 0.85094 0.75029 0.79270 0.79766 1.18310 1.18902 1.18086 1.20856 0.93585 1.15057 0.97727 1.20511 0.93833 0.94518 0.96375 0.92349 0.90994 0.91770 0.90143 0.93777 0.93052 0.90794 0.90156 0.95916 0.75805 0.75960 0.86408 0.86900 0.89180 0.87750 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.84 71.98 0.64 -1.61 16 2 C -0.09 -1.94 2.36 -10.79 -0.03 -1.96 16 3 C -0.15 -3.16 9.04 71.98 0.65 -2.51 16 4 C 0.15 4.09 1.95 44.99 0.09 4.17 16 5 H 0.08 2.48 7.58 -2.39 -0.02 2.46 16 6 C 0.07 1.72 6.34 71.98 0.46 2.17 16 7 O -0.58 -13.43 12.73 -148.98 -1.90 -15.32 16 8 N -0.71 -24.15 4.28 -445.60 -1.91 -26.06 16 9 C 0.57 24.69 7.73 86.72 0.67 25.36 16 10 O -0.61 -29.04 15.98 -4.00 -0.06 -29.11 16 11 C -0.29 -13.81 5.89 -19.94 -0.12 -13.92 16 12 C -0.05 -2.42 9.47 22.25 0.21 -2.21 16 13 C -0.20 -10.00 8.63 22.47 0.19 -9.81 16 14 C 0.10 5.38 5.58 -21.28 -0.12 5.26 16 15 C -0.47 -24.27 9.04 23.45 0.21 -24.06 16 16 H 0.09 4.19 7.91 -2.91 -0.02 4.17 16 17 C 0.04 1.78 5.14 85.35 0.44 2.22 16 18 N -0.80 -38.69 10.95 21.87 0.24 -38.45 16 19 Si 0.99 35.08 29.60 68.60 2.03 37.11 16 20 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 21 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 22 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 23 C -0.25 -12.78 9.73 22.47 0.22 -12.56 16 24 C -0.03 -1.63 9.52 22.25 0.21 -1.42 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.96 6.55 -2.39 -0.02 0.94 16 28 H 0.08 1.81 7.56 -2.39 -0.02 1.79 16 29 H 0.04 1.07 7.44 -2.39 -0.02 1.05 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.51 6.71 -2.39 -0.02 1.49 16 33 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.39 5.75 9.12 -74.06 -0.68 5.07 16 35 H 0.40 12.84 6.39 -92.70 -0.59 12.25 16 36 H 0.12 4.52 6.37 -2.91 -0.02 4.50 16 37 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 38 H 0.30 12.77 8.29 -92.70 -0.77 12.00 16 39 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 40 H 0.10 4.90 7.63 -2.91 -0.02 4.87 16 Total: -1.00 -63.05 330.59 1.93 -61.13 By element: Atomic # 1 Polarization: 41.76 SS G_CDS: -0.20 Total: 41.56 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.73 Total: -30.86 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -1.67 Total: -64.51 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.96 Total: -44.43 kcal Atomic # 14 Polarization: 35.08 SS G_CDS: 2.03 Total: 37.11 kcal Total: -63.05 1.93 -61.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648254250.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.908 kcal (2) G-P(sol) polarization free energy of solvation -63.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds