Wall clock time and date at job start Mon Mar 30 2020 01:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46863 * 2 1 4 4 C 1.53002 * 109.46863 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47030 * 179.97438 * 4 3 2 6 6 O 1.41594 * 120.00196 * 255.00224 * 5 4 3 7 7 C 1.34777 * 119.99660 * 75.00036 * 5 4 3 8 8 O 1.21286 * 120.00322 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99988 * 180.02562 * 7 5 4 10 10 H 1.08998 * 109.46940 * 59.99761 * 9 7 5 11 11 C 1.50699 * 109.46615 * 299.99884 * 9 7 5 12 12 H 1.08003 * 119.99853 * 125.77753 * 11 9 7 13 13 C 1.37873 * 120.00411 * 305.76806 * 11 9 7 14 14 N 1.31522 * 119.99791 * 5.09607 * 13 11 9 15 15 Si 1.86797 * 120.00333 * 185.09658 * 13 11 9 16 16 H 1.48499 * 109.47122 * 60.00121 * 15 13 11 17 17 H 1.48496 * 109.47451 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47043 * 300.00091 * 15 13 11 19 19 C 1.50695 * 109.47233 * 179.97438 * 9 7 5 20 20 C 1.38231 * 119.99897 * 115.07674 * 19 9 7 21 21 C 1.38241 * 120.00215 * 179.97438 * 20 19 9 22 22 C 1.38238 * 119.99753 * 359.96137 * 21 20 19 23 23 C 1.38227 * 120.00011 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00228 * 295.05941 * 19 9 7 25 25 H 1.08994 * 109.47152 * 300.00034 * 1 2 3 26 26 H 1.09003 * 109.46919 * 60.00634 * 1 2 3 27 27 H 1.08999 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47600 * 240.00247 * 2 1 3 29 29 H 1.09002 * 109.47403 * 119.99150 * 2 1 3 30 30 H 1.08994 * 109.47264 * 60.00035 * 3 2 1 31 31 H 1.09003 * 109.46835 * 299.99417 * 3 2 1 32 32 H 1.09003 * 109.47169 * 59.99792 * 4 3 2 33 33 H 1.09002 * 109.47121 * 299.99880 * 4 3 2 34 34 H 0.96701 * 113.99918 * 359.97438 * 6 5 4 35 35 H 0.96998 * 120.00050 * 179.97438 * 14 13 11 36 36 H 1.08005 * 120.00460 * 359.97438 * 20 19 9 37 37 H 1.08003 * 120.00184 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.99490 * 179.72002 * 22 21 20 39 39 H 1.08005 * 120.00440 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.99906 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8239 0.0000 6 8 4.5940 3.3849 -1.1845 7 6 3.9976 3.5605 1.1270 8 8 3.5383 3.0801 2.1416 9 6 4.4994 4.9815 1.1263 10 1 3.9353 5.5656 0.3992 11 6 5.9608 4.9979 0.7589 12 1 6.3051 5.6136 -0.0590 13 6 6.8584 4.2272 1.4668 14 7 6.4273 3.4024 2.3962 15 14 8.6868 4.3544 1.1062 16 1 9.1429 5.7471 1.3457 17 1 9.4325 3.4289 1.9964 18 1 8.9385 3.9878 -0.3106 19 6 4.3191 5.5786 2.4981 20 6 5.4244 5.9403 3.2452 21 6 5.2591 6.4886 4.5035 22 6 3.9882 6.6758 5.0142 23 6 2.8829 6.3154 4.2666 24 6 3.0483 5.7650 3.0093 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 4.5961 2.7810 -1.9397 35 1 7.0587 2.8599 2.8940 36 1 6.4174 5.7947 2.8460 37 1 6.1227 6.7708 5.0873 38 1 3.8592 7.0999 5.9990 39 1 1.8899 6.4612 4.6657 40 1 2.1846 5.4830 2.4253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649061691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:35 Heat of formation + Delta-G solvation = -12.133213 kcal Electronic energy + Delta-G solvation = -22353.747263 eV Core-core repulsion = 19135.602785 eV Total energy + Delta-G solvation = -3218.144477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.97271 -37.69777 -35.77191 -34.91196 -33.59978 -31.32730 -30.78508 -29.61207 -28.45528 -26.88409 -24.15296 -23.08183 -21.22449 -21.03356 -20.29132 -19.06552 -17.15848 -16.67666 -15.80201 -15.28139 -15.09100 -14.68258 -14.30780 -14.03764 -13.66232 -13.36739 -13.22410 -12.73433 -12.59414 -12.44546 -12.31196 -12.10913 -11.89523 -11.42592 -11.26885 -11.08255 -10.98111 -10.90312 -10.87415 -10.72753 -10.36465 -10.29133 -10.01956 -9.65112 -9.31468 -8.59239 -8.29409 -7.74124 -7.53139 -7.38016 -6.07630 -4.15327 2.51034 2.61927 3.08608 3.26314 3.32573 3.34098 4.15692 4.38931 4.93322 5.06327 5.07258 5.18700 5.23360 5.30449 5.62483 5.75951 5.82863 5.85128 5.90426 5.96099 6.01393 6.06494 6.13051 6.24257 6.39388 6.46833 6.57596 6.65013 6.68320 6.85460 6.98244 7.12580 7.25731 7.52586 7.66932 7.80007 7.86656 7.95461 8.18333 8.34229 8.59238 8.86177 9.45042 9.63502 10.94894 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.007486 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.730468 B = 3739.648509 C = 5164.560569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.137 4.137 4 C 0.111 3.889 5 N -0.479 5.479 6 O -0.312 6.312 7 C 0.585 3.415 8 O -0.533 6.533 9 C 0.062 3.938 10 H 0.057 0.943 11 C -0.505 4.505 12 H 0.065 0.935 13 C 0.066 3.934 14 N -0.858 5.858 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.020 4.020 20 C -0.058 4.058 21 C -0.148 4.148 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.115 4.115 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.361 0.639 35 H 0.265 0.735 36 H 0.137 0.863 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 -2.628 -4.518 8.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.176 4.176 4 C -0.011 4.011 5 N -0.258 5.258 6 O -0.201 6.201 7 C 0.378 3.622 8 O -0.409 6.409 9 C 0.041 3.959 10 H 0.075 0.925 11 C -0.543 4.543 12 H 0.083 0.917 13 C -0.139 4.139 14 N -0.493 5.493 15 Si 0.714 3.286 16 H -0.199 1.199 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.021 4.021 20 C -0.076 4.076 21 C -0.167 4.167 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.134 4.134 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.203 0.797 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.537 -2.489 -3.392 7.774 hybrid contribution 1.189 -0.731 -0.698 1.560 sum -5.349 -3.220 -4.090 7.464 Atomic orbital electron populations 1.21749 0.96000 1.01149 1.01844 1.21441 0.95769 0.96825 1.01783 1.22035 0.95964 0.96688 1.02883 1.21667 0.93595 0.83353 1.02473 1.49622 1.62962 1.10845 1.02357 1.89375 1.84589 1.33038 1.13136 1.20850 0.73960 0.88761 0.78616 1.90590 1.47674 1.73489 1.29126 1.17810 0.98032 0.88815 0.91220 0.92502 1.20608 0.89508 1.27405 1.16777 0.91665 1.25021 0.98894 0.94962 0.94991 1.70042 1.34357 1.22869 1.22029 0.86726 0.85353 0.78175 0.78314 1.19913 1.21345 1.20163 1.19923 0.91639 0.93935 0.96587 1.21448 1.00680 0.93266 0.92187 1.21075 0.96119 1.02425 0.97054 1.20788 0.93236 1.03196 0.98941 1.20770 0.97411 1.02425 0.95505 1.20882 0.96976 0.99752 0.95753 0.92629 0.92959 0.93060 0.92379 0.91842 0.90672 0.92278 0.91348 0.90294 0.79678 0.92515 0.84530 0.87955 0.88102 0.87987 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.25 16 2 C -0.12 -1.46 5.93 -26.73 -0.16 -1.61 16 3 C -0.14 -2.05 5.35 -26.73 -0.14 -2.20 16 4 C 0.11 1.90 5.57 -4.04 -0.02 1.88 16 5 N -0.48 -10.03 3.77 -60.28 -0.23 -10.25 16 6 O -0.31 -5.92 13.31 -11.47 -0.15 -6.07 16 7 C 0.59 14.42 5.14 -10.98 -0.06 14.36 16 8 O -0.53 -14.33 14.23 5.55 0.08 -14.25 16 9 C 0.06 1.56 2.28 -94.08 -0.21 1.34 16 10 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 11 C -0.50 -13.02 6.65 -34.44 -0.23 -13.25 16 12 H 0.07 1.68 7.82 -52.48 -0.41 1.26 16 13 C 0.07 1.72 3.19 -17.82 -0.06 1.66 16 14 N -0.86 -23.67 10.42 55.43 0.58 -23.09 16 15 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 C -0.02 -0.49 4.50 -104.63 -0.47 -0.96 16 20 C -0.06 -1.42 8.00 -39.58 -0.32 -1.73 16 21 C -0.15 -3.20 10.05 -39.58 -0.40 -3.60 16 22 C -0.14 -2.86 10.05 -39.59 -0.40 -3.26 16 23 C -0.14 -2.91 10.05 -39.58 -0.40 -3.30 16 24 C -0.12 -2.60 8.73 -39.58 -0.35 -2.95 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.35 7.34 -51.93 -0.38 0.97 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.93 7.83 -51.93 -0.41 0.52 16 33 H 0.08 1.54 7.90 -51.93 -0.41 1.13 16 34 H 0.36 4.68 8.72 45.56 0.40 5.07 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.14 3.53 4.97 -52.48 -0.26 3.27 16 37 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 40 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -31.12 330.11 -7.87 -38.99 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -5.26 Total: 9.23 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -2.84 Total: -14.88 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.35 Total: -33.34 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.07 Total: -20.33 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.12 -7.87 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649061691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.854 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds