Wall clock time and date at job start Mon Mar 30 2020 01:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46863 * 2 1 4 4 C 1.53002 * 109.46863 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47030 * 179.97438 * 4 3 2 6 6 O 1.41594 * 120.00196 * 255.00224 * 5 4 3 7 7 C 1.34777 * 119.99660 * 75.00036 * 5 4 3 8 8 O 1.21286 * 120.00322 * 359.97438 * 7 5 4 9 9 C 1.50703 * 119.99988 * 180.02562 * 7 5 4 10 10 H 1.08998 * 109.46940 * 59.99761 * 9 7 5 11 11 C 1.50699 * 109.46615 * 299.99884 * 9 7 5 12 12 H 1.08003 * 119.99853 * 125.77753 * 11 9 7 13 13 C 1.37873 * 120.00411 * 305.76806 * 11 9 7 14 14 N 1.31522 * 119.99791 * 5.09607 * 13 11 9 15 15 Si 1.86797 * 120.00333 * 185.09658 * 13 11 9 16 16 H 1.48499 * 109.47122 * 60.00121 * 15 13 11 17 17 H 1.48496 * 109.47451 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47043 * 300.00091 * 15 13 11 19 19 C 1.50695 * 109.47233 * 179.97438 * 9 7 5 20 20 C 1.38231 * 119.99897 * 115.07674 * 19 9 7 21 21 C 1.38241 * 120.00215 * 179.97438 * 20 19 9 22 22 C 1.38238 * 119.99753 * 359.96137 * 21 20 19 23 23 C 1.38227 * 120.00011 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00228 * 295.05941 * 19 9 7 25 25 H 1.08994 * 109.47152 * 300.00034 * 1 2 3 26 26 H 1.09003 * 109.46919 * 60.00634 * 1 2 3 27 27 H 1.08999 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47600 * 240.00247 * 2 1 3 29 29 H 1.09002 * 109.47403 * 119.99150 * 2 1 3 30 30 H 1.08994 * 109.47264 * 60.00035 * 3 2 1 31 31 H 1.09003 * 109.46835 * 299.99417 * 3 2 1 32 32 H 1.09003 * 109.47169 * 59.99792 * 4 3 2 33 33 H 1.09002 * 109.47121 * 299.99880 * 4 3 2 34 34 H 0.96701 * 113.99918 * 359.97438 * 6 5 4 35 35 H 0.96998 * 120.00050 * 179.97438 * 14 13 11 36 36 H 1.08005 * 120.00460 * 359.97438 * 20 19 9 37 37 H 1.08003 * 120.00184 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.99490 * 179.72002 * 22 21 20 39 39 H 1.08005 * 120.00440 * 179.97438 * 23 22 21 40 40 H 1.08003 * 119.99906 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0583 2.8239 0.0000 6 8 4.5940 3.3849 -1.1845 7 6 3.9976 3.5605 1.1270 8 8 3.5383 3.0801 2.1416 9 6 4.4994 4.9815 1.1263 10 1 3.9353 5.5656 0.3992 11 6 5.9608 4.9979 0.7589 12 1 6.3051 5.6136 -0.0590 13 6 6.8584 4.2272 1.4668 14 7 6.4273 3.4024 2.3962 15 14 8.6868 4.3544 1.1062 16 1 9.1429 5.7471 1.3457 17 1 9.4325 3.4289 1.9964 18 1 8.9385 3.9878 -0.3106 19 6 4.3191 5.5786 2.4981 20 6 5.4244 5.9403 3.2452 21 6 5.2591 6.4886 4.5035 22 6 3.9882 6.6758 5.0142 23 6 2.8829 6.3154 4.2666 24 6 3.0483 5.7650 3.0093 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 4.5961 2.7810 -1.9397 35 1 7.0587 2.8599 2.8940 36 1 6.4174 5.7947 2.8460 37 1 6.1227 6.7708 5.0873 38 1 3.8592 7.0999 5.9990 39 1 1.8899 6.4612 4.6657 40 1 2.1846 5.4830 2.4253 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649061691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:34 Heat of formation + Delta-G solvation = -31.162655 kcal Electronic energy + Delta-G solvation = -22354.572441 eV Core-core repulsion = 19135.602785 eV Total energy + Delta-G solvation = -3218.969656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.74156 -39.35750 -37.40348 -36.20457 -35.45248 -32.77814 -32.62624 -31.32666 -29.96671 -28.52529 -25.93029 -24.53048 -22.92576 -22.23308 -21.87966 -20.83567 -18.97103 -18.32836 -17.40396 -17.06224 -16.75632 -16.18327 -15.88894 -15.64870 -15.35674 -14.96749 -14.63661 -14.25587 -14.08563 -13.99723 -13.82876 -13.71179 -13.36574 -13.10320 -12.97610 -12.68244 -12.57721 -12.25991 -12.22079 -12.12550 -11.94616 -11.78534 -11.48058 -11.45407 -11.17754 -10.54058 -10.21302 -9.44647 -9.18230 -9.12042 -8.06651 -6.19154 0.81248 0.91756 1.41617 1.43833 1.50368 1.54296 2.30075 2.48392 3.20679 3.25850 3.75626 3.95786 4.08917 4.20649 4.29842 4.34937 4.42022 4.49930 4.55290 4.68098 4.72349 4.85518 4.91375 4.96469 4.98674 5.02910 5.13998 5.17429 5.27800 5.36393 5.42432 5.45486 5.55238 5.71751 5.85123 5.95834 6.00457 6.33729 6.42643 6.51956 6.80134 7.11268 7.44031 7.84226 8.94341 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.007486 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.730468 B = 3739.648509 C = 5164.560569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.126 4.126 4 C 0.109 3.891 5 N -0.481 5.481 6 O -0.322 6.322 7 C 0.581 3.419 8 O -0.567 6.567 9 C 0.054 3.946 10 H 0.053 0.947 11 C -0.507 4.507 12 H 0.059 0.941 13 C 0.036 3.964 14 N -0.884 5.884 15 Si 0.940 3.060 16 H -0.268 1.268 17 H -0.292 1.292 18 H -0.271 1.271 19 C -0.045 4.045 20 C -0.086 4.086 21 C -0.154 4.154 22 C -0.138 4.138 23 C -0.140 4.140 24 C -0.131 4.131 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.389 0.611 35 H 0.257 0.743 36 H 0.115 0.885 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.933 -2.791 -4.894 8.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.165 4.165 4 C -0.012 4.012 5 N -0.258 5.258 6 O -0.216 6.216 7 C 0.374 3.626 8 O -0.446 6.446 9 C 0.033 3.967 10 H 0.071 0.929 11 C -0.545 4.545 12 H 0.078 0.922 13 C -0.166 4.166 14 N -0.520 5.520 15 Si 0.766 3.234 16 H -0.193 1.193 17 H -0.218 1.218 18 H -0.196 1.196 19 C -0.046 4.046 20 C -0.104 4.104 21 C -0.173 4.173 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.149 4.149 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.129 0.871 33 H 0.068 0.932 34 H 0.235 0.765 35 H 0.066 0.934 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.032 -2.666 -3.828 8.439 hybrid contribution 1.298 -0.656 -0.642 1.590 sum -5.734 -3.322 -4.471 7.994 Atomic orbital electron populations 1.21740 0.94847 1.02312 1.01693 1.21422 0.96741 0.94618 1.02518 1.21917 0.94279 0.98599 1.01662 1.21893 0.94970 0.81245 1.03052 1.49386 1.62078 1.11815 1.02485 1.89323 1.84414 1.34504 1.13358 1.20606 0.73925 0.88923 0.79179 1.90547 1.49186 1.74173 1.30647 1.17874 0.97611 0.89440 0.91786 0.92944 1.20689 0.90277 1.27060 1.16485 0.92236 1.25496 1.01987 0.94494 0.94638 1.70201 1.34930 1.23800 1.23085 0.85885 0.81297 0.78128 0.78070 1.19336 1.21762 1.19622 1.20009 0.92729 0.95075 0.96821 1.21381 0.99647 0.95453 0.93886 1.21377 0.98048 1.01690 0.96141 1.21225 0.92141 1.01836 1.00354 1.21197 0.99475 1.00723 0.94382 1.21035 0.96279 1.00514 0.97120 0.93918 0.92031 0.91235 0.89910 0.92804 0.94306 0.90993 0.87140 0.93204 0.76512 0.93376 0.86716 0.85729 0.84012 0.84441 0.87946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.91 71.98 0.71 -2.23 16 2 C -0.11 -2.60 5.93 30.60 0.18 -2.42 16 3 C -0.13 -3.71 5.35 30.60 0.16 -3.55 16 4 C 0.11 3.68 5.57 86.38 0.48 4.16 16 5 N -0.48 -20.25 3.77 -463.03 -1.74 -21.99 16 6 O -0.32 -11.98 13.31 -38.77 -0.52 -12.50 16 7 C 0.58 29.45 5.14 87.66 0.45 29.90 16 8 O -0.57 -31.64 14.23 -3.05 -0.04 -31.69 16 9 C 0.05 2.78 2.28 -13.03 -0.03 2.75 16 10 H 0.05 2.62 8.14 -2.39 -0.02 2.60 16 11 C -0.51 -26.73 6.65 25.60 0.17 -26.56 16 12 H 0.06 3.12 7.82 -2.91 -0.02 3.09 16 13 C 0.04 1.89 3.19 84.65 0.27 2.16 16 14 N -0.88 -50.06 10.42 21.45 0.22 -49.83 16 15 Si 0.94 42.26 29.54 68.60 2.03 44.29 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 C -0.05 -2.29 4.50 -19.87 -0.09 -2.38 16 20 C -0.09 -4.26 8.00 22.27 0.18 -4.08 16 21 C -0.15 -6.52 10.05 22.27 0.22 -6.29 16 22 C -0.14 -5.14 10.05 22.27 0.22 -4.92 16 23 C -0.14 -5.42 10.05 22.27 0.22 -5.20 16 24 C -0.13 -5.96 8.73 22.27 0.19 -5.76 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.43 7.34 -2.39 -0.02 1.41 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.11 2.72 7.83 -2.39 -0.02 2.70 16 33 H 0.05 1.98 7.90 -2.39 -0.02 1.97 16 34 H 0.39 9.22 8.72 -74.06 -0.65 8.58 16 35 H 0.26 14.39 8.31 -92.71 -0.77 13.61 16 36 H 0.12 6.11 4.97 -2.91 -0.01 6.10 16 37 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 38 H 0.14 4.12 8.06 -2.91 -0.02 4.09 16 39 H 0.14 4.29 8.06 -2.91 -0.02 4.26 16 40 H 0.10 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -69.31 330.11 3.68 -65.62 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.38 Total: 30.53 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 3.36 Total: -24.43 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.52 Total: -71.82 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.56 Total: -44.18 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -69.31 3.68 -65.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649061691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.461 kcal (2) G-P(sol) polarization free energy of solvation -69.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds