Wall clock time and date at job start Mon Mar 30 2020 01:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99532 * 2 1 4 4 C 1.38737 * 120.05170 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.70519 * 6 5 4 8 8 C 1.52998 * 109.47452 * 89.99823 * 7 6 5 9 9 C 1.50700 * 109.47072 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00065 * 180.02562 * 9 8 7 12 12 C 1.46511 * 119.99704 * 359.97438 * 11 9 8 13 13 C 1.46496 * 120.00396 * 180.02562 * 11 9 8 14 14 C 1.50705 * 109.47139 * 89.99515 * 13 11 9 15 15 H 1.07999 * 119.99832 * 0.02562 * 14 13 11 16 16 C 1.37872 * 119.99904 * 180.02562 * 14 13 11 17 17 N 1.31518 * 119.99946 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00029 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47200 * 90.00142 * 18 16 14 20 20 H 1.48509 * 109.47079 * 209.99941 * 18 16 14 21 21 H 1.48500 * 109.47250 * 329.99832 * 18 16 14 22 22 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 23 23 C 1.38149 * 120.05738 * 0.02562 * 22 6 5 24 24 H 1.09003 * 109.47369 * 299.99418 * 1 2 3 25 25 H 1.08993 * 109.47840 * 59.99890 * 1 2 3 26 26 H 1.09006 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.03029 * 0.02562 * 4 3 2 28 28 H 1.07997 * 119.97354 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.46668 * 209.99879 * 7 6 5 30 30 H 1.08997 * 109.47106 * 329.99123 * 7 6 5 31 31 H 1.09001 * 109.47089 * 300.00245 * 8 7 6 32 32 H 1.09005 * 109.46795 * 59.99925 * 8 7 6 33 33 H 1.08995 * 109.47028 * 90.00350 * 12 11 9 34 34 H 1.08995 * 109.46702 * 210.00080 * 12 11 9 35 35 H 1.09000 * 109.46949 * 330.00208 * 12 11 9 36 36 H 1.09002 * 109.47118 * 209.99825 * 13 11 9 37 37 H 1.09006 * 109.47022 * 329.99971 * 13 11 9 38 38 H 0.96999 * 119.99825 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.97210 * 179.97438 * 22 6 5 40 40 H 1.07998 * 120.03203 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0089 8 6 4.2225 5.4783 -1.4311 9 6 4.9072 6.8208 -1.4237 10 8 5.1795 7.3569 -0.3704 11 7 5.2169 7.4258 -2.5875 12 6 4.8884 6.7779 -3.8599 13 6 5.8829 8.7305 -2.5804 14 6 7.3768 8.5319 -2.5769 15 1 7.7888 7.5336 -2.5801 16 6 8.2175 9.6246 -2.5696 17 7 9.5212 9.4513 -2.5671 18 14 7.5048 11.3514 -2.5633 19 1 7.3124 11.8024 -1.1616 20 1 8.4386 12.2749 -3.2566 21 1 6.1970 11.3497 -3.2668 22 6 1.9209 3.6048 0.0021 23 6 1.2913 2.3751 0.0016 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0208 0.3800 -0.0014 28 1 5.1344 2.5751 0.0000 29 1 3.3560 5.7444 0.5232 30 1 4.9419 4.9365 0.5259 31 1 4.8524 4.7525 -1.9454 32 1 3.2663 5.5605 -1.9480 33 1 3.8913 7.0839 -4.1765 34 1 5.6161 7.0725 -4.6160 35 1 4.9134 5.6956 -3.7336 36 1 5.5930 9.2913 -3.4690 37 1 5.5880 9.2842 -1.6889 38 1 10.1127 10.2201 -2.5615 39 1 1.3340 4.5115 0.0038 40 1 0.2128 2.3201 0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019833708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:17 Heat of formation + Delta-G solvation = -75.814132 kcal Electronic energy + Delta-G solvation = -20607.070988 eV Core-core repulsion = 17386.165099 eV Total energy + Delta-G solvation = -3220.905889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.13962 -40.61269 -38.64457 -36.64124 -34.80445 -34.36201 -32.00860 -31.06880 -29.73227 -28.13283 -27.30753 -25.63010 -23.78734 -23.49248 -21.76616 -19.89842 -19.14822 -19.05779 -17.93334 -17.27937 -17.07829 -16.60185 -16.56905 -16.06484 -15.95295 -15.21939 -14.84370 -14.79137 -14.46938 -14.32214 -14.01421 -13.81893 -13.61278 -13.49713 -13.27120 -12.92875 -12.79364 -12.75604 -12.41404 -12.26177 -12.08460 -11.96767 -11.77588 -11.74722 -11.60445 -10.83485 -10.63737 -9.92921 -9.37290 -9.01803 -8.34311 -6.39474 0.41465 0.45145 1.32621 1.36933 1.45464 1.83494 2.30966 2.37453 2.42286 2.81785 3.00063 3.66149 3.86361 3.98733 4.09681 4.16942 4.28561 4.35554 4.42583 4.43518 4.49059 4.55991 4.68008 4.68628 4.73442 4.78233 4.84138 4.94092 4.98767 5.01656 5.15899 5.22806 5.34618 5.42484 5.46078 5.63589 5.75550 5.84684 6.23965 6.48497 6.61799 6.72759 7.21527 7.45054 8.82763 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042833 B = 0.002946 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.540140 B = 9502.709799 C = 9604.079093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.109 3.891 4 C -0.161 4.161 5 C -0.083 4.083 6 C -0.120 4.120 7 C -0.055 4.055 8 C -0.116 4.116 9 C 0.494 3.506 10 O -0.597 6.597 11 N -0.610 5.610 12 C 0.077 3.923 13 C 0.221 3.779 14 C -0.536 4.536 15 H 0.027 0.973 16 C 0.008 3.992 17 N -0.946 5.946 18 Si 0.950 3.050 19 H -0.276 1.276 20 H -0.275 1.275 21 H -0.237 1.237 22 C -0.078 4.078 23 C -0.205 4.205 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.136 0.864 28 H 0.134 0.866 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.018 0.982 38 H 0.268 0.732 39 H 0.141 0.859 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.065 -16.722 0.759 27.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.064 3.936 4 C -0.180 4.180 5 C -0.101 4.101 6 C -0.121 4.121 7 C -0.093 4.093 8 C -0.155 4.155 9 C 0.283 3.717 10 O -0.478 6.478 11 N -0.341 5.341 12 C -0.065 4.065 13 C 0.099 3.901 14 C -0.575 4.575 15 H 0.045 0.955 16 C -0.189 4.189 17 N -0.587 5.587 18 Si 0.773 3.227 19 H -0.202 1.202 20 H -0.200 1.200 21 H -0.160 1.160 22 C -0.096 4.096 23 C -0.224 4.224 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.135 0.865 27 H 0.154 0.846 28 H 0.152 0.848 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.159 0.841 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.696 -16.553 1.252 27.318 hybrid contribution 0.526 0.936 0.145 1.083 sum -21.170 -15.618 1.397 26.344 Atomic orbital electron populations 1.23328 0.76545 1.05480 1.02253 1.86041 1.23417 1.26914 1.88788 1.19221 0.92581 0.84766 0.96995 1.20587 0.91910 0.98823 1.06676 1.21044 1.00476 0.91074 0.97527 1.19766 0.94115 0.94351 1.03834 1.20152 1.00442 0.93323 0.95359 1.21653 1.02502 0.91932 0.99418 1.21505 0.78843 0.88380 0.82942 1.90630 1.56735 1.67909 1.32572 1.48014 1.57767 1.21027 1.07324 1.21972 1.01509 0.98714 0.84313 1.19339 0.90843 0.82785 0.97155 1.21575 0.91484 0.93386 1.51031 0.95460 1.25895 0.94965 1.04220 0.93865 1.70056 1.04086 1.32505 1.52007 0.85681 0.79779 0.78280 0.78989 1.20209 1.19968 1.16021 1.21079 0.93609 0.98016 0.96915 1.21445 1.01088 0.91657 1.08177 0.91811 0.91661 0.86471 0.84578 0.84845 0.91026 0.92321 0.87741 0.86222 0.90114 0.91758 0.89245 0.93196 0.96354 0.92266 0.84125 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.22 10.50 -92.44 -0.97 -7.19 16 3 C 0.11 2.19 6.69 22.51 0.15 2.34 16 4 C -0.16 -3.38 9.99 22.37 0.22 -3.15 16 5 C -0.08 -1.81 9.69 22.25 0.22 -1.60 16 6 C -0.12 -2.68 5.14 -19.85 -0.10 -2.78 16 7 C -0.05 -1.47 4.63 29.85 0.14 -1.33 16 8 C -0.12 -3.09 4.23 29.85 0.13 -2.97 16 9 C 0.49 19.81 7.67 87.66 0.67 20.49 16 10 O -0.60 -30.03 15.56 -3.04 -0.05 -30.07 16 11 N -0.61 -24.78 2.86 -851.11 -2.43 -27.21 16 12 C 0.08 2.17 10.24 127.77 1.31 3.47 16 13 C 0.22 10.91 4.23 85.64 0.36 11.27 16 14 C -0.54 -32.03 9.94 25.60 0.25 -31.78 16 15 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 16 C 0.01 0.50 5.47 84.65 0.46 0.96 16 17 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 18 Si 0.95 44.89 27.47 68.60 1.88 46.78 16 19 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 22 C -0.08 -1.48 9.69 22.26 0.22 -1.27 16 23 C -0.21 -3.56 9.04 22.37 0.20 -3.36 16 24 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 25 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 26 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 28 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 29 H 0.07 1.98 8.04 -2.39 -0.02 1.96 16 30 H 0.06 1.81 8.04 -2.39 -0.02 1.79 16 31 H 0.10 2.52 7.40 -2.39 -0.02 2.50 16 32 H 0.12 2.43 8.11 -2.38 -0.02 2.41 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 35 H 0.09 2.00 6.44 -2.39 -0.02 1.99 16 36 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16 37 H 0.02 0.97 6.85 -2.38 -0.02 0.95 16 38 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 39 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 40 H 0.15 1.77 6.30 -2.91 -0.02 1.76 16 Total: -1.00 -79.78 336.09 5.04 -74.74 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.96 Total: 11.63 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 5.34 Total: -8.40 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -2.13 Total: -87.48 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.02 Total: -37.26 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -79.78 5.04 -74.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019833708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.071 kcal (2) G-P(sol) polarization free energy of solvation -79.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds