Wall clock time and date at job start Mon Mar 30 2020 01:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47029 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00004 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00152 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00132 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46800 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47177 * 120.00096 * 10 8 6 13 13 H 1.48492 * 109.47234 * 240.00155 * 10 8 6 14 14 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 15 15 C 1.50695 * 109.46944 * 66.04457 * 14 2 1 16 16 C 1.38359 * 119.85110 * 269.72490 * 15 14 2 17 17 C 1.37948 * 120.15186 * 179.72479 * 16 15 14 18 18 C 1.39632 * 119.84263 * 0.57282 * 17 16 15 19 19 C 1.47729 * 120.14793 * 179.68071 * 18 17 16 20 20 O 1.21467 * 120.00055 * 180.02562 * 19 18 17 21 21 O 1.34715 * 119.99835 * 0.02562 * 19 18 17 22 22 C 1.39623 * 119.70177 * 359.70103 * 18 17 16 23 23 C 1.37943 * 119.84946 * 0.02562 * 22 18 17 24 24 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 25 25 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 27 27 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 28 28 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 29 29 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 30 30 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 31 31 H 1.09001 * 109.46899 * 299.99594 * 5 4 3 32 32 H 1.08991 * 109.47614 * 59.99853 * 5 4 3 33 33 H 0.96998 * 120.00055 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.46783 * 186.04686 * 14 2 1 35 35 H 1.09002 * 109.46955 * 306.04307 * 14 2 1 36 36 H 1.08002 * 119.92666 * 359.97438 * 16 15 14 37 37 H 1.07995 * 120.07828 * 180.27256 * 17 16 15 38 38 H 0.96703 * 116.99664 * 179.97438 * 21 19 18 39 39 H 1.08006 * 120.07361 * 179.97438 * 22 18 17 40 40 H 1.08000 * 119.92436 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 6 1.8211 4.1616 -2.6166 7 1 1.2581 3.6259 -3.3667 8 6 2.2113 5.4638 -2.8468 9 7 2.8964 6.1163 -1.9333 10 14 1.7668 6.3014 -4.4562 11 1 0.9987 5.3591 -5.3089 12 1 0.9394 7.5026 -4.1771 13 1 3.0083 6.7086 -5.1617 14 6 1.9955 -0.7660 1.1376 15 6 1.6370 -2.2204 0.9729 16 6 0.4520 -2.7016 1.5006 17 6 0.1149 -4.0306 1.3485 18 6 0.9785 -4.8933 0.6704 19 6 0.6275 -6.3192 0.5098 20 8 1.3809 -7.0674 -0.0802 21 8 -0.5281 -6.7898 1.0176 22 6 2.1753 -4.4021 0.1453 23 6 2.4973 -3.0697 0.2998 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9274 0.8310 28 1 3.0797 1.3444 0.1083 29 1 2.0658 1.5016 -2.1491 30 1 0.5471 2.0845 -1.4264 31 1 1.7462 4.0418 -0.4875 32 1 3.2645 3.4583 -1.2104 33 1 3.1712 7.0323 -2.0953 34 1 3.0798 -0.6611 1.1756 35 1 1.5612 -0.3872 2.0628 36 1 -0.2126 -2.0344 2.0294 37 1 -0.8124 -4.4040 1.7572 38 1 -0.7145 -7.7297 0.8870 39 1 2.8479 -5.0642 -0.3799 40 1 3.4230 -2.6887 -0.1056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037918980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:55 Heat of formation + Delta-G solvation = -76.406466 kcal Electronic energy + Delta-G solvation = -20238.546404 eV Core-core repulsion = 17017.614829 eV Total energy + Delta-G solvation = -3220.931575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71580 -39.36083 -37.29589 -36.40136 -33.87287 -32.38256 -31.34265 -30.83833 -27.65206 -27.05487 -24.87897 -23.32935 -22.81500 -21.54429 -20.77058 -19.88899 -18.45104 -17.72925 -16.36520 -15.93980 -15.75974 -15.67374 -15.45109 -14.91365 -14.63900 -14.36080 -13.89042 -13.78062 -13.46865 -13.17260 -12.78976 -12.31709 -12.02133 -11.91262 -11.81010 -11.74989 -11.38177 -11.26938 -11.19539 -10.89274 -10.83104 -10.55253 -10.47766 -9.63202 -9.39400 -9.24622 -9.14845 -9.02351 -8.34366 -8.15098 -5.99539 -4.01405 0.39324 1.11563 2.24128 2.68775 3.31559 3.39038 3.43480 3.46272 4.22046 4.46378 4.47764 4.59330 4.68463 4.78388 5.09021 5.12437 5.33651 5.36513 5.38284 5.47141 5.57707 5.63245 5.74836 5.80422 5.93917 5.94675 6.07402 6.10733 6.13808 6.28765 6.33895 6.57119 6.67866 6.73964 7.08957 7.26489 7.31861 7.55276 7.68929 7.83267 8.01012 8.44417 9.06057 9.62728 11.11950 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037551 B = 0.002531 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.474696 B =11061.611081 C =11231.494382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.105 4.105 5 C 0.021 3.979 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.082 3.918 15 C -0.029 4.029 16 C -0.130 4.130 17 C -0.061 4.061 18 C -0.138 4.138 19 C 0.529 3.471 20 O -0.517 6.517 21 O -0.513 6.513 22 C -0.053 4.053 23 C -0.111 4.111 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.023 0.977 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.013 0.987 32 H 0.016 0.984 33 H 0.259 0.741 34 H 0.087 0.913 35 H 0.045 0.955 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.413 0.587 39 H 0.137 0.863 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 -22.420 9.756 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.260 5.260 3 C -0.071 4.071 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.074 0.926 8 C -0.146 4.146 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.045 4.045 15 C -0.030 4.030 16 C -0.148 4.148 17 C -0.079 4.079 18 C -0.139 4.139 19 C 0.373 3.627 20 O -0.407 6.407 21 O -0.325 6.325 22 C -0.071 4.071 23 C -0.129 4.129 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.272 0.728 39 H 0.155 0.845 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.819 -22.249 9.260 24.576 hybrid contribution -0.640 0.343 -0.211 0.756 sum -5.459 -21.906 9.049 24.323 Atomic orbital electron populations 1.22517 0.87692 1.01488 1.01338 1.62103 1.08009 1.15222 1.40658 1.22352 0.99611 0.85729 0.99384 1.21654 1.00125 0.98159 0.94309 1.19079 0.96238 0.89297 0.97007 1.21288 1.34614 0.97562 1.02081 0.92629 1.25032 0.95255 0.97535 0.96748 1.69975 1.38463 1.11248 1.33951 0.86544 0.78183 0.79460 0.83881 1.19721 1.21068 1.21011 1.21190 1.01153 0.89147 0.93045 1.20192 0.93431 0.95676 0.93661 1.21109 0.96978 0.95346 1.01409 1.21391 0.98440 0.92958 0.95150 1.18999 0.98181 0.89849 1.06919 1.20978 0.78169 0.88904 0.74600 1.90888 1.50744 1.59033 1.39995 1.84564 1.40114 1.33731 1.74105 1.21272 0.94450 0.95736 0.95657 1.21056 1.00659 0.92318 0.98872 0.90508 0.91739 0.95816 0.95144 0.91105 0.92559 0.93396 0.96842 0.96597 0.93101 0.89463 0.93701 0.85262 0.84587 0.72810 0.84519 0.84565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.98 60.07 0.54 0.77 16 2 N -0.54 -7.56 4.75 -244.36 -1.16 -8.72 16 3 C 0.06 0.93 4.96 -3.83 -0.02 0.91 16 4 C -0.10 -2.14 5.08 -26.73 -0.14 -2.27 16 5 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 6 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 7 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.08 0.93 5.11 -4.98 -0.03 0.90 16 15 C -0.03 -0.30 4.89 -104.53 -0.51 -0.81 16 16 C -0.13 -1.20 7.89 -39.64 -0.31 -1.51 16 17 C -0.06 -0.55 9.62 -39.17 -0.38 -0.93 16 18 C -0.14 -1.41 5.87 -104.98 -0.62 -2.02 16 19 C 0.53 5.37 8.27 34.61 0.29 5.66 16 20 O -0.52 -6.66 17.13 -19.24 -0.33 -6.99 16 21 O -0.51 -3.61 12.68 -40.53 -0.51 -4.12 16 22 C -0.05 -0.54 9.60 -39.17 -0.38 -0.92 16 23 C -0.11 -1.13 9.68 -39.64 -0.38 -1.51 16 24 H 0.08 1.09 6.47 -51.93 -0.34 0.76 16 25 H 0.06 0.74 5.90 -51.93 -0.31 0.44 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.03 0.51 8.12 -51.92 -0.42 0.09 16 28 H 0.07 1.16 7.93 -51.93 -0.41 0.74 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 0.97 6.55 -51.93 -0.34 0.63 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 35 H 0.04 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.13 1.01 8.00 -52.49 -0.42 0.59 16 37 H 0.14 0.98 7.61 -52.49 -0.40 0.58 16 38 H 0.41 1.06 9.11 45.56 0.42 1.47 16 39 H 0.14 1.32 7.65 -52.48 -0.40 0.92 16 40 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -33.01 338.15 -8.78 -41.79 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -5.10 Total: -2.68 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.48 Total: -14.84 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: -0.43 Total: -34.98 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.84 Total: -11.11 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.01 -8.78 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037918980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.620 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds