Wall clock time and date at job start Mon Mar 30 2020 01:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99814 * 2 1 4 4 C 1.53001 * 109.47528 * 293.95568 * 3 2 1 5 5 C 1.52995 * 109.47341 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47029 * 180.02562 * 5 4 3 7 7 H 1.08004 * 119.99877 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00004 * 179.97438 * 6 5 4 9 9 N 1.31518 * 120.00152 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00132 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.46800 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47177 * 120.00096 * 10 8 6 13 13 H 1.48492 * 109.47234 * 240.00155 * 10 8 6 14 14 C 1.46905 * 110.99995 * 123.95456 * 2 1 3 15 15 C 1.50695 * 109.46944 * 66.04457 * 14 2 1 16 16 C 1.38359 * 119.85110 * 269.72490 * 15 14 2 17 17 C 1.37948 * 120.15186 * 179.72479 * 16 15 14 18 18 C 1.39632 * 119.84263 * 0.57282 * 17 16 15 19 19 C 1.47729 * 120.14793 * 179.68071 * 18 17 16 20 20 O 1.21467 * 120.00055 * 180.02562 * 19 18 17 21 21 O 1.34715 * 119.99835 * 0.02562 * 19 18 17 22 22 C 1.39623 * 119.70177 * 359.70103 * 18 17 16 23 23 C 1.37943 * 119.84946 * 0.02562 * 22 18 17 24 24 H 1.08992 * 109.47459 * 59.99744 * 1 2 3 25 25 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47033 * 299.99847 * 1 2 3 27 27 H 1.09009 * 109.47296 * 53.95365 * 3 2 1 28 28 H 1.09002 * 109.47055 * 173.95064 * 3 2 1 29 29 H 1.09001 * 109.46792 * 299.99900 * 4 3 2 30 30 H 1.09001 * 109.46841 * 59.99659 * 4 3 2 31 31 H 1.09001 * 109.46899 * 299.99594 * 5 4 3 32 32 H 1.08991 * 109.47614 * 59.99853 * 5 4 3 33 33 H 0.96998 * 120.00055 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.46783 * 186.04686 * 14 2 1 35 35 H 1.09002 * 109.46955 * 306.04307 * 14 2 1 36 36 H 1.08002 * 119.92666 * 359.97438 * 16 15 14 37 37 H 1.07995 * 120.07828 * 180.27256 * 17 16 15 38 38 H 0.96703 * 116.99664 * 179.97438 * 21 19 18 39 39 H 1.08006 * 120.07361 * 179.97438 * 22 18 17 40 40 H 1.08000 * 119.92436 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1802 3.4856 -1.3184 6 6 1.8211 4.1616 -2.6166 7 1 1.2581 3.6259 -3.3667 8 6 2.2113 5.4638 -2.8468 9 7 2.8964 6.1163 -1.9333 10 14 1.7668 6.3014 -4.4562 11 1 0.9987 5.3591 -5.3089 12 1 0.9394 7.5026 -4.1771 13 1 3.0083 6.7086 -5.1617 14 6 1.9955 -0.7660 1.1376 15 6 1.6370 -2.2204 0.9729 16 6 0.4520 -2.7016 1.5006 17 6 0.1149 -4.0306 1.3485 18 6 0.9785 -4.8933 0.6704 19 6 0.6275 -6.3192 0.5098 20 8 1.3809 -7.0674 -0.0802 21 8 -0.5281 -6.7898 1.0176 22 6 2.1753 -4.4021 0.1453 23 6 2.4973 -3.0697 0.2998 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9274 0.8310 28 1 3.0797 1.3444 0.1083 29 1 2.0658 1.5016 -2.1491 30 1 0.5471 2.0845 -1.4264 31 1 1.7462 4.0418 -0.4875 32 1 3.2645 3.4583 -1.2104 33 1 3.1712 7.0323 -2.0953 34 1 3.0798 -0.6611 1.1756 35 1 1.5612 -0.3872 2.0628 36 1 -0.2126 -2.0344 2.0294 37 1 -0.8124 -4.4040 1.7572 38 1 -0.7145 -7.7297 0.8870 39 1 2.8479 -5.0642 -0.3799 40 1 3.4230 -2.6887 -0.1056 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037918980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:54 Heat of formation + Delta-G solvation = -97.439890 kcal Electronic energy + Delta-G solvation = -20239.458481 eV Core-core repulsion = 17017.614829 eV Total energy + Delta-G solvation = -3221.843652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.46438 -40.17342 -38.39706 -37.11625 -35.71727 -33.81559 -32.35749 -31.99300 -28.73353 -28.54971 -26.23503 -24.49193 -23.71600 -22.77807 -21.61148 -21.47571 -19.16029 -18.48768 -18.45244 -16.80573 -16.70243 -16.66085 -16.57980 -16.29622 -15.85958 -15.48296 -15.04552 -14.74593 -14.47766 -14.29577 -13.95219 -13.71763 -13.47819 -13.17104 -12.87856 -12.74165 -12.64138 -12.61270 -12.51339 -12.29390 -12.16278 -11.96515 -11.70701 -11.40561 -11.33816 -11.07423 -10.54286 -9.98077 -9.94666 -9.24209 -8.19542 -6.29971 -0.37704 0.39172 1.40283 1.40726 1.47105 1.54134 2.05373 2.41446 2.66524 3.13711 3.19810 3.69955 3.81724 3.99351 4.04536 4.17951 4.29339 4.38222 4.38821 4.52389 4.58680 4.71496 4.74915 4.76613 4.84859 4.97211 5.05360 5.08137 5.12331 5.21921 5.28359 5.35185 5.52532 5.54250 5.58685 5.76984 5.83859 5.88117 6.07846 6.16115 6.29269 6.87244 6.94001 7.39203 8.92453 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037551 B = 0.002531 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.474696 B =11061.611081 C =11231.494382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.545 5.545 3 C 0.068 3.932 4 C -0.090 4.090 5 C 0.025 3.975 6 C -0.541 4.541 7 H 0.057 0.943 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.084 3.916 15 C -0.038 4.038 16 C -0.128 4.128 17 C -0.055 4.055 18 C -0.150 4.150 19 C 0.534 3.466 20 O -0.552 6.552 21 O -0.503 6.503 22 C -0.062 4.062 23 C -0.117 4.117 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.032 0.968 27 H 0.030 0.970 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.049 0.951 31 H -0.009 1.009 32 H -0.007 1.007 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.433 0.567 39 H 0.135 0.865 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 -23.234 9.863 26.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.269 5.269 3 C -0.059 4.059 4 C -0.128 4.128 5 C -0.012 4.012 6 C -0.579 4.579 7 H 0.075 0.925 8 C -0.199 4.199 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.203 1.203 14 C -0.043 4.043 15 C -0.038 4.038 16 C -0.146 4.146 17 C -0.073 4.073 18 C -0.152 4.152 19 C 0.380 3.620 20 O -0.444 6.444 21 O -0.317 6.317 22 C -0.081 4.081 23 C -0.135 4.135 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.010 0.990 32 H 0.011 0.989 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.165 0.835 37 H 0.175 0.825 38 H 0.295 0.705 39 H 0.153 0.847 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.190 -23.095 9.383 25.686 hybrid contribution -0.258 0.534 -0.188 0.622 sum -6.448 -22.562 9.195 25.202 Atomic orbital electron populations 1.22525 0.86952 1.02497 1.00963 1.61996 1.08779 1.13503 1.42602 1.22048 0.99780 0.87181 0.96905 1.21391 0.99749 0.95192 0.96430 1.18977 0.94746 0.92211 0.95291 1.21723 1.34747 0.98266 1.03138 0.92456 1.25969 0.95020 0.98334 1.00566 1.70097 1.39418 1.11755 1.36098 0.85417 0.78143 0.78356 0.79253 1.18728 1.20303 1.20349 1.21209 1.01437 0.89275 0.92349 1.20167 0.94158 0.95052 0.94451 1.21313 0.96640 0.95745 1.00940 1.21595 0.98774 0.92614 0.94295 1.19178 0.98452 0.90276 1.07251 1.20983 0.78369 0.88740 0.73906 1.90876 1.51993 1.59843 1.41706 1.84514 1.38411 1.35596 1.73164 1.21333 0.94853 0.95834 0.96031 1.21151 1.01007 0.92366 0.98974 0.92131 0.90000 0.94928 0.95203 0.91027 0.93223 0.93207 0.99025 0.98880 0.92784 0.89097 0.92471 0.83474 0.82550 0.70478 0.84685 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.98 127.69 1.15 1.59 16 2 N -0.54 -14.59 4.75 -927.02 -4.41 -19.00 16 3 C 0.07 2.23 4.96 86.30 0.43 2.66 16 4 C -0.09 -3.68 5.08 30.59 0.16 -3.53 16 5 C 0.03 1.34 4.97 29.85 0.15 1.49 16 6 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 7 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 8 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 9 N -0.93 -56.90 13.29 21.45 0.28 -56.62 16 10 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 11 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.08 1.74 5.11 85.55 0.44 2.18 16 15 C -0.04 -0.71 4.89 -19.81 -0.10 -0.81 16 16 C -0.13 -2.02 7.89 22.23 0.18 -1.85 16 17 C -0.05 -0.84 9.62 22.54 0.22 -0.63 16 18 C -0.15 -2.84 5.87 -20.10 -0.12 -2.96 16 19 C 0.53 10.15 8.27 70.33 0.58 10.74 16 20 O -0.55 -13.95 17.13 19.94 0.34 -13.61 16 21 O -0.50 -5.91 12.68 -56.25 -0.71 -6.63 16 22 C -0.06 -1.23 9.60 22.53 0.22 -1.02 16 23 C -0.12 -2.26 9.68 22.23 0.22 -2.04 16 24 H 0.06 1.65 6.47 -2.39 -0.02 1.64 16 25 H 0.08 1.68 5.90 -2.38 -0.01 1.67 16 26 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.03 0.98 8.12 -2.38 -0.02 0.96 16 28 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 2.01 6.55 -2.39 -0.02 1.99 16 31 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 32 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 33 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.09 1.81 7.87 -2.39 -0.02 1.79 16 35 H 0.06 1.06 8.06 -2.39 -0.02 1.04 16 36 H 0.15 1.79 8.00 -2.91 -0.02 1.76 16 37 H 0.16 1.73 7.61 -2.91 -0.02 1.70 16 38 H 0.43 1.23 9.11 -74.05 -0.67 0.56 16 39 H 0.14 2.64 7.65 -2.91 -0.02 2.62 16 40 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -70.74 338.15 2.10 -68.65 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.36 Total: 5.27 kcal Atomic # 6 Polarization: -28.83 SS G_CDS: 4.20 Total: -24.63 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -4.12 Total: -75.62 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.37 Total: -20.24 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -70.74 2.10 -68.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037918980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.795 kcal (2) G-P(sol) polarization free energy of solvation -70.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds